Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09002 * 109.47137 * 305.70687 * 3 2 1 5 5 C 1.50695 * 109.46958 * 185.71026 * 3 2 1 6 6 H 1.07998 * 120.00617 * 334.94517 * 5 3 2 7 7 C 1.37876 * 119.99734 * 154.95065 * 5 3 2 8 8 N 1.31510 * 120.00360 * 5.64431 * 7 5 3 9 9 Si 1.86806 * 120.00007 * 185.64842 * 7 5 3 10 10 H 1.48506 * 109.46788 * 269.99874 * 9 7 5 11 11 H 1.48500 * 109.47096 * 29.99575 * 9 7 5 12 12 H 1.48496 * 109.47266 * 150.00009 * 9 7 5 13 13 N 1.46497 * 109.46853 * 65.70612 * 3 2 1 14 14 C 1.38378 * 120.00067 * 274.99899 * 13 3 2 15 15 N 1.32900 * 120.76596 * 359.72245 * 14 13 3 16 16 C 1.32160 * 121.17996 * 179.75741 * 15 14 13 17 17 Cl 1.73603 * 118.78486 * 180.27198 * 16 15 14 18 18 N 1.31766 * 122.42867 * 0.54036 * 16 15 14 19 19 C 1.32901 * 120.62471 * 359.73281 * 18 16 15 20 20 N 1.37197 * 134.89648 * 180.02562 * 19 18 16 21 21 H 0.96993 * 126.27961 * 359.95808 * 20 19 18 22 22 C 1.36347 * 107.44076 * 179.97438 * 20 19 18 23 23 N 1.30124 * 109.97676 * 0.02562 * 22 20 19 24 24 C 1.35501 * 109.44115 * 359.97438 * 23 22 20 25 25 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 27 27 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 28 28 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 30 30 H 0.97000 * 120.00251 * 355.09468 * 8 7 5 31 31 H 0.96998 * 119.99952 * 95.00923 * 13 3 2 32 32 H 1.08000 * 125.00973 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 -0.8345 5 6 3.5403 1.4448 -0.1414 6 1 4.1138 0.5857 0.1740 7 6 4.1809 2.5438 -0.6732 8 7 3.4972 3.6315 -0.9540 9 14 6.0202 2.4877 -0.9952 10 1 6.7483 2.9574 0.2109 11 1 6.4259 1.0935 -1.3066 12 1 6.3484 3.3675 -2.1455 13 7 1.6670 2.0923 1.2589 14 6 0.4187 2.6738 1.3940 15 7 -0.4516 2.6566 0.3898 16 6 -1.6478 3.2053 0.5115 17 17 -2.7383 3.1407 -0.8377 18 7 -2.0413 3.8041 1.6173 19 6 -1.2361 3.8748 2.6723 20 7 -1.3354 4.4086 3.9323 21 1 -2.1019 4.8768 4.2984 22 6 -0.1589 4.1604 4.5751 23 7 0.6493 3.5114 3.7884 24 6 0.0444 3.3016 2.5942 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.5324 3.6372 -0.8541 31 1 2.2952 2.1150 1.9977 32 1 0.0690 4.4593 5.5876 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893187695.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = 86.591508 kcal Electronic energy + Delta-G solvation = -19910.838561 eV Core-core repulsion = 16740.147535 eV Total energy + Delta-G solvation = -3170.691026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.18365 -39.00927 -36.92119 -36.18612 -33.73492 -32.33452 -31.68093 -31.33968 -28.86221 -26.53449 -23.72250 -23.53858 -22.78552 -21.28147 -20.22422 -19.19213 -17.70045 -17.19306 -16.58936 -15.81687 -15.15368 -14.84784 -14.29252 -14.11891 -13.87137 -13.80401 -13.23983 -12.94735 -12.38790 -11.72541 -11.43151 -11.15529 -11.08460 -11.05312 -10.85502 -10.79622 -10.42084 -10.21856 -10.14688 -9.91945 -9.35186 -8.87939 -8.79584 -8.71151 -8.54289 -7.08663 -6.62211 -4.44257 1.13794 1.67089 1.79292 2.83655 2.92493 3.32884 3.36125 3.52981 3.86642 4.24036 4.35209 4.35283 4.78759 4.83607 5.13741 5.27044 5.75288 5.90350 5.97858 6.02387 6.21324 6.49046 6.65301 6.78567 6.89009 6.96078 7.02197 7.20550 7.38318 7.69595 7.84435 8.07924 8.17981 8.32839 8.59097 8.77465 9.36232 10.75383 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.006540 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.978120 B = 4280.353668 C = 5099.977102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.236 3.764 4 H 0.065 0.935 5 C -0.608 4.608 6 H 0.059 0.941 7 C 0.033 3.967 8 N -0.882 5.882 9 Si 1.073 2.927 10 H -0.286 1.286 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.639 5.639 14 C 0.515 3.485 15 N -0.570 5.570 16 C 0.438 3.562 17 Cl 0.013 6.987 18 N -0.580 5.580 19 C 0.312 3.688 20 N -0.581 5.581 21 H 0.426 0.574 22 C 0.226 3.774 23 N -0.448 5.448 24 C -0.122 4.122 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.278 0.722 31 H 0.406 0.594 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.118 0.165 7.886 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.137 3.863 4 H 0.083 0.917 5 C -0.647 4.647 6 H 0.077 0.923 7 C -0.177 4.177 8 N -0.515 5.515 9 Si 0.900 3.100 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.262 5.262 14 C 0.260 3.740 15 N -0.305 5.305 16 C 0.139 3.861 17 Cl 0.041 6.959 18 N -0.313 5.313 19 C 0.071 3.929 20 N -0.197 5.197 21 H 0.265 0.735 22 C -0.061 4.061 23 N -0.167 5.167 24 C -0.250 4.250 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.245 0.755 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.492 0.602 6.508 9.942 hybrid contribution -1.941 -0.203 1.547 2.490 sum -9.433 0.399 8.054 12.410 Atomic orbital electron populations 1.21853 0.96959 0.98675 1.02110 1.21808 0.94309 0.98638 1.00729 1.19266 0.95291 0.89036 0.82688 0.91703 1.22152 0.91044 1.05355 1.46118 0.92254 1.26070 1.07279 0.91787 0.92611 1.70724 1.10189 1.27310 1.43278 0.83494 0.73605 0.75788 0.77137 1.21221 1.21055 1.20769 1.47449 1.08655 1.51201 1.18933 1.18077 0.87313 0.84580 0.84054 1.67709 1.03217 1.29221 1.30374 1.21937 0.87286 0.89817 0.87016 1.98391 1.60565 1.96603 1.40380 1.66397 1.37423 1.28360 0.99123 1.18307 0.91715 0.95798 0.87053 1.42655 1.17611 1.49237 1.10177 0.73537 1.25221 0.81084 1.00206 0.99624 1.70136 1.30049 1.15689 1.00829 1.19775 0.95714 1.13245 0.96313 0.95192 0.93984 0.92057 0.91871 0.93707 0.91017 0.75542 0.76270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.47 37.16 0.31 -2.34 16 2 C -0.12 -2.41 5.58 -26.73 -0.15 -2.56 16 3 C 0.24 5.59 1.81 -69.08 -0.13 5.46 16 4 H 0.07 1.71 6.37 -51.93 -0.33 1.38 16 5 C -0.61 -15.65 8.50 -34.44 -0.29 -15.95 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 8 N -0.88 -25.36 13.63 55.43 0.76 -24.60 16 9 Si 1.07 23.64 29.91 -169.99 -5.08 18.55 16 10 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 N -0.64 -14.26 5.15 -54.73 -0.28 -14.54 16 14 C 0.52 11.07 6.11 -154.67 -0.94 10.12 16 15 N -0.57 -12.02 6.60 -10.68 -0.07 -12.09 16 16 C 0.44 8.49 8.16 -91.86 -0.75 7.74 16 17 Cl 0.01 0.21 29.25 -51.86 -1.52 -1.31 16 18 N -0.58 -10.81 10.43 -10.96 -0.11 -10.92 16 19 C 0.31 5.52 8.51 -155.80 -1.33 4.20 16 20 N -0.58 -7.23 6.20 -13.25 -0.08 -7.32 16 21 H 0.43 3.59 8.96 -40.82 -0.37 3.22 16 22 C 0.23 2.75 12.98 -89.48 -1.16 1.59 16 23 N -0.45 -7.80 11.28 -11.84 -0.13 -7.93 16 24 C -0.12 -2.40 7.16 -84.53 -0.61 -3.01 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.84 5.58 -51.93 -0.29 0.55 16 27 H 0.06 1.20 7.74 -51.93 -0.40 0.80 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.28 8.17 6.78 -40.82 -0.28 7.89 16 31 H 0.41 9.07 8.62 -40.82 -0.35 8.71 16 32 H 0.22 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -30.63 290.85 -10.19 -40.82 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -2.91 Total: 8.92 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -5.14 Total: 6.03 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: 0.07 Total: -77.40 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.08 Total: 18.55 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.63 -10.19 -40.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187695.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.412 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds