Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47553 * 2 1 4 4 C 1.35686 * 125.67941 * 266.63000 * 3 2 1 5 5 C 1.35554 * 108.86033 * 180.26359 * 4 3 2 6 6 Cl 1.73603 * 126.06676 * 179.73020 * 5 4 3 7 7 C 1.39861 * 107.86595 * 359.75220 * 5 4 3 8 8 C 1.37654 * 125.68382 * 86.46878 * 3 2 1 9 9 C 1.46545 * 126.22807 * 0.02562 * 8 3 2 10 10 O 1.21736 * 119.99861 * 344.27932 * 9 8 3 11 11 N 1.34776 * 119.99649 * 164.28091 * 9 8 3 12 12 C 1.36882 * 119.99413 * 184.30328 * 11 9 8 13 13 H 1.08000 * 120.00049 * 19.24736 * 12 11 9 14 14 C 1.39010 * 119.99552 * 199.24802 * 12 11 9 15 15 N 1.31393 * 120.00107 * 17.27063 * 14 12 11 16 16 Si 1.86799 * 119.99746 * 197.26667 * 14 12 11 17 17 H 1.48502 * 109.47180 * 60.00072 * 16 14 12 18 18 H 1.48507 * 109.47140 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47215 * 299.99914 * 16 14 12 20 20 C 1.46491 * 120.00224 * 4.30005 * 11 9 8 21 21 C 1.47200 * 109.47066 * 84.60440 * 20 11 9 22 22 N 6.43882 * 90.11736 * 27.83484 * 2 1 3 23 23 H 1.08991 * 109.47332 * 185.15171 * 1 2 3 24 24 H 1.09001 * 109.46475 * 305.14962 * 1 2 3 25 25 H 1.08998 * 109.46844 * 65.14134 * 1 2 3 26 26 H 1.09004 * 109.46907 * 240.00275 * 2 1 3 27 27 H 1.09006 * 109.47288 * 120.00228 * 2 1 3 28 28 H 1.08001 * 125.56910 * 0.02562 * 4 3 2 29 29 H 1.07995 * 126.45044 * 179.97438 * 7 5 4 30 30 H 0.96998 * 119.99931 * 180.02562 * 15 14 12 31 31 H 1.09006 * 109.47277 * 204.60226 * 20 11 9 32 32 H 1.08996 * 109.47701 * 324.60079 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.3434 2.1057 -1.1003 5 6 2.7598 3.3347 -0.7084 6 17 3.2878 4.6163 -1.7536 7 6 2.6890 3.3869 0.6875 8 6 2.2212 2.1611 1.1160 9 6 1.9891 1.7606 2.5064 10 8 1.3208 0.7732 2.7519 11 7 2.5156 2.4855 3.5133 12 6 2.3735 2.0632 4.8075 13 1 2.1294 1.0319 5.0154 14 6 2.5435 2.9619 5.8544 15 7 2.5016 4.2548 5.6237 16 14 2.8312 2.3315 7.5891 17 1 4.0673 1.5089 7.6181 18 1 2.9812 3.4824 8.5155 19 1 1.6746 1.5020 8.0125 20 6 3.2399 3.7253 3.2225 21 6 2.2818 4.8362 3.1007 22 7 1.5432 5.6938 3.0064 23 1 -0.3633 -1.0234 0.0923 24 1 -0.3632 0.5917 0.8403 25 1 -0.3633 0.4320 -0.9324 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 2.2839 1.7584 -2.1212 29 1 2.9515 4.2277 1.3123 30 1 2.6205 4.8818 6.3542 31 1 3.9393 3.9358 4.0316 32 1 3.7888 3.6147 2.2874 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906479461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = 52.696947 kcal Electronic energy + Delta-G solvation = -19948.912354 eV Core-core repulsion = 16744.458798 eV Total energy + Delta-G solvation = -3204.453555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.54665 -40.12101 -37.84860 -37.27792 -36.21765 -34.99720 -33.75544 -30.81816 -30.09588 -29.06639 -26.90301 -24.47876 -23.19682 -21.92414 -20.34158 -19.73657 -18.55288 -17.97057 -17.46909 -16.45008 -16.22421 -15.95702 -15.62541 -15.35379 -15.04905 -14.82283 -14.51216 -13.99508 -13.83664 -13.58141 -13.48304 -13.28604 -13.08411 -12.91364 -12.87223 -12.41213 -12.31709 -12.14463 -12.07066 -12.03122 -11.67869 -11.14596 -10.58621 -10.00971 -9.61802 -9.15049 -8.43746 -6.02427 0.51488 1.20985 1.44792 1.47989 1.55323 1.57628 1.79253 2.07555 2.14036 2.35309 2.44161 3.00474 3.10514 3.53021 3.82586 3.90071 4.06264 4.17275 4.23492 4.43631 4.49517 4.60274 4.77473 4.82721 4.89260 5.01975 5.26077 5.42576 5.45558 5.81023 5.98471 6.23010 6.35399 6.95054 7.02532 7.24211 7.81845 8.58931 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.006558 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.070452 B = 4268.689492 C = 5405.876303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 N -0.403 5.403 4 C 0.044 3.956 5 C -0.135 4.135 6 Cl -0.048 7.048 7 C -0.176 4.176 8 C -0.029 4.029 9 C 0.507 3.493 10 O -0.608 6.608 11 N -0.432 5.432 12 C -0.337 4.337 13 H 0.092 0.908 14 C 0.004 3.996 15 N -0.891 5.891 16 Si 0.996 3.004 17 H -0.258 1.258 18 H -0.278 1.278 19 H -0.280 1.280 20 C 0.203 3.797 21 C 0.259 3.741 22 N -0.498 5.498 23 H 0.092 0.908 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.080 0.920 28 H 0.217 0.783 29 H 0.156 0.844 30 H 0.278 0.722 31 H 0.127 0.873 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.776 -5.343 -12.538 14.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.019 4.019 3 N -0.076 5.076 4 C -0.093 4.093 5 C -0.168 4.168 6 Cl -0.019 7.019 7 C -0.202 4.202 8 C -0.143 4.143 9 C 0.298 3.702 10 O -0.495 6.495 11 N -0.150 5.150 12 C -0.464 4.464 13 H 0.110 0.890 14 C -0.199 4.199 15 N -0.529 5.529 16 Si 0.820 3.180 17 H -0.182 1.182 18 H -0.203 1.203 19 H -0.205 1.205 20 C 0.076 3.924 21 C -0.058 4.058 22 N -0.178 5.178 23 H 0.111 0.889 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.153 0.847 27 H 0.099 0.901 28 H 0.234 0.766 29 H 0.173 0.827 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.299 -4.661 -12.463 13.709 hybrid contribution 0.080 0.023 1.298 1.301 sum 3.379 -4.639 -11.165 12.553 Atomic orbital electron populations 1.22019 0.94031 1.03647 1.01708 1.22180 0.96082 0.77964 1.05636 1.44235 1.46723 1.12522 1.04166 1.22221 1.03503 0.90449 0.93100 1.19974 1.13926 0.92217 0.90687 1.98296 1.89378 1.49105 1.65151 1.22019 1.06440 0.97207 0.94531 1.20063 1.12782 0.93159 0.88323 1.17231 0.82795 0.86342 0.83834 1.90616 1.43384 1.30430 1.85077 1.43396 1.46316 1.19469 1.05769 1.19704 1.49551 0.96462 0.80683 0.89046 1.26081 0.95426 0.94709 1.03662 1.69871 1.46120 1.01869 1.35066 0.84934 0.79206 0.77693 0.76184 1.18188 1.20335 1.20548 1.19685 0.89998 0.77488 1.05182 1.29351 0.94027 0.93694 0.88721 1.80881 1.09834 1.13156 1.13952 0.88943 0.95358 0.90863 0.84736 0.90114 0.76630 0.82725 0.91186 0.85572 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 10.12 71.98 0.73 -3.19 16 2 C 0.10 2.50 6.08 86.38 0.53 3.03 16 3 N -0.40 -12.12 2.77 -510.79 -1.41 -13.53 16 4 C 0.04 1.08 11.36 83.48 0.95 2.03 16 5 C -0.14 -3.97 6.66 22.04 0.15 -3.83 16 6 Cl -0.05 -1.23 29.30 -2.72 -0.08 -1.31 16 7 C -0.18 -6.21 8.24 22.61 0.19 -6.03 16 8 C -0.03 -1.10 6.70 40.34 0.27 -0.83 16 9 C 0.51 23.83 7.47 86.41 0.65 24.48 16 10 O -0.61 -31.37 14.04 -4.46 -0.06 -31.44 16 11 N -0.43 -20.75 2.59 -650.11 -1.68 -22.43 16 12 C -0.34 -17.39 9.30 84.09 0.78 -16.61 16 13 H 0.09 4.96 7.42 -2.91 -0.02 4.94 16 14 C 0.00 0.19 4.96 84.94 0.42 0.61 16 15 N -0.89 -44.55 9.25 21.67 0.20 -44.35 16 16 Si 1.00 39.40 29.59 68.60 2.03 41.43 16 17 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 18 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 19 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.20 8.41 4.70 84.58 0.40 8.81 16 21 C 0.26 11.92 11.03 89.44 0.99 12.91 16 22 N -0.50 -24.54 18.54 20.00 0.37 -24.17 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.03 0.97 7.48 -2.39 -0.02 0.95 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.13 1.99 8.13 -2.38 -0.02 1.97 16 27 H 0.08 2.44 6.95 -2.38 -0.02 2.43 16 28 H 0.22 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.16 5.66 3.39 -2.91 -0.01 5.65 16 30 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 31 H 0.13 5.24 6.47 -2.38 -0.02 5.23 16 32 H 0.14 4.77 4.66 -2.39 -0.01 4.76 16 Total: -1.00 -65.52 291.16 6.58 -58.94 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.18 Total: 15.48 kcal Atomic # 6 Polarization: 15.34 SS G_CDS: 6.04 Total: 21.38 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -2.53 Total: -104.48 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -65.52 6.58 -58.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906479461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.636 kcal (2) G-P(sol) polarization free energy of solvation -65.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds