Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 H 1.07999 * 119.99543 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00082 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00029 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99986 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47247 * 90.00117 * 9 7 5 11 11 H 1.48508 * 109.47156 * 209.99775 * 9 7 5 12 12 H 1.48496 * 109.47338 * 329.99797 * 9 7 5 13 13 S 1.81000 * 109.47293 * 120.00038 * 2 1 3 14 14 C 1.76202 * 99.99976 * 294.99983 * 13 2 1 15 15 N 1.30905 * 124.97163 * 180.02562 * 14 13 2 16 16 C 1.36193 * 108.68784 * 179.97438 * 15 14 13 17 17 C 1.39547 * 133.62479 * 180.02562 * 16 15 14 18 18 C 1.37774 * 119.76295 * 179.97438 * 17 16 15 19 19 C 1.38819 * 120.36340 * 0.05948 * 18 17 16 20 20 F 1.35104 * 119.79187 * 179.97438 * 19 18 17 21 21 C 1.38210 * 120.41537 * 359.97214 * 19 18 17 22 22 C 1.38547 * 119.88037 * 0.02562 * 21 19 18 23 23 O 1.34522 * 124.96798 * 359.69235 * 14 13 2 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 28 28 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 29 29 H 0.97002 * 119.99900 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.11778 * 0.02562 * 17 16 15 31 31 H 1.07997 * 119.81691 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.06663 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2304 -1.1937 -2.3577 8 7 5.5411 -1.1005 -2.4134 9 14 3.3015 -2.1089 -3.6952 10 1 2.9408 -1.1641 -4.7826 11 1 4.1599 -3.1898 -4.2432 12 1 2.0654 -2.7005 -3.1232 13 16 2.1334 -0.8532 1.4778 14 6 1.5440 0.2423 2.7257 15 7 1.7198 0.0779 4.0125 16 6 1.1310 1.1156 4.6694 17 6 1.0061 1.4552 6.0171 18 6 0.3332 2.6033 6.3736 19 6 -0.2217 3.4225 5.3998 20 9 -0.8797 4.5454 5.7624 21 6 -0.1053 3.0965 4.0618 22 6 0.5686 1.9452 3.6879 23 8 0.8530 1.3732 2.4951 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.7516 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 6.0254 -1.5073 -3.1489 30 1 1.4362 0.8207 6.7779 31 1 0.2364 2.8672 7.4163 32 1 -0.5388 3.7381 3.3089 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919854484.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = -13.616771 kcal Electronic energy + Delta-G solvation = -18650.892588 eV Core-core repulsion = 15425.687198 eV Total energy + Delta-G solvation = -3225.205389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.17706 -43.12721 -37.89908 -35.07569 -34.49119 -32.29614 -31.03076 -29.50196 -28.24792 -24.43043 -23.36590 -23.13216 -22.19236 -20.66368 -18.82825 -18.15217 -17.15434 -16.91816 -16.87752 -16.21262 -15.73806 -15.34286 -14.93251 -14.53227 -14.31142 -13.48279 -13.22327 -13.16038 -12.87066 -12.50018 -12.33820 -12.08148 -11.69551 -11.67088 -11.55090 -11.24720 -10.77349 -10.51927 -10.17787 -9.89493 -9.86619 -9.48894 -9.20204 -8.91946 -8.69607 -7.32032 -6.18741 -4.20298 0.38926 0.90540 1.11310 2.05721 2.19571 3.03234 3.20163 3.29209 3.29424 3.33882 4.00885 4.28972 4.30728 4.44126 4.68983 4.81381 5.14397 5.15678 5.24500 5.35320 5.49965 5.66705 5.69104 5.76968 5.88875 6.03309 6.06072 6.15132 6.31144 6.38499 6.80235 6.93976 7.44852 7.50966 8.32303 8.85457 9.40339 10.93465 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.003724 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.059842 B = 7517.461935 C = 7752.877817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 H 0.099 0.901 4 C 0.002 3.998 5 C -0.535 4.535 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.891 5.891 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.264 1.264 13 S 0.115 5.885 14 C 0.229 3.771 15 N -0.477 5.477 16 C 0.034 3.966 17 C -0.040 4.040 18 C -0.148 4.148 19 C 0.111 3.889 20 F -0.131 7.131 21 C -0.124 4.124 22 C 0.025 3.975 23 O -0.204 6.204 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 5.860 13.114 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.213 4.213 3 H 0.117 0.883 4 C -0.037 4.037 5 C -0.573 4.573 6 H 0.101 0.899 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.189 1.189 13 S 0.350 5.650 14 C -0.087 4.087 15 N -0.211 5.211 16 C -0.080 4.080 17 C -0.060 4.060 18 C -0.168 4.168 19 C 0.090 3.910 20 F -0.110 7.110 21 C -0.144 4.144 22 C -0.029 4.029 23 O -0.098 6.098 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.393 4.284 13.313 18.038 hybrid contribution -1.410 1.472 -1.246 2.390 sum -12.803 5.756 12.066 18.511 Atomic orbital electron populations 1.22223 0.93693 1.02764 1.02317 1.23757 0.97672 1.03651 0.96249 0.88255 1.19553 0.98236 0.95706 0.90161 1.21122 0.88959 1.36584 1.10636 0.89935 1.24974 0.94722 0.95476 0.97662 1.69897 1.06557 1.44320 1.32081 0.86861 0.80376 0.80160 0.82478 1.20085 1.21061 1.18867 1.86990 1.64232 1.22747 0.91036 1.29594 0.92862 0.88092 0.98134 1.71165 1.24236 1.24027 1.01667 1.20058 0.99870 0.92796 0.95321 1.20103 0.97336 0.95883 0.92660 1.20950 1.00885 0.95116 0.99881 1.17004 0.97173 0.85005 0.91768 1.91524 1.78540 1.48823 1.92107 1.19511 1.03432 0.96046 0.95374 1.19828 1.02090 0.97055 0.83966 1.84831 1.60623 1.33778 1.30558 0.91194 0.92790 0.91564 0.95265 0.94369 0.92417 0.83579 0.83449 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.01 37.16 0.33 -1.90 16 2 C -0.08 -1.52 2.29 -26.73 -0.06 -1.59 16 3 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 4 C 0.00 0.05 3.51 -27.88 -0.10 -0.04 16 5 C -0.53 -14.01 9.09 -34.44 -0.31 -14.33 16 6 H 0.08 2.35 7.84 -52.49 -0.41 1.94 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 9 Si 0.87 20.24 27.47 -169.99 -4.67 15.57 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 13 S 0.12 2.12 21.06 -107.50 -2.26 -0.14 16 14 C 0.23 4.06 7.94 52.37 0.42 4.47 16 15 N -0.48 -8.44 11.39 -11.45 -0.13 -8.57 16 16 C 0.03 0.52 7.23 -84.68 -0.61 -0.10 16 17 C -0.04 -0.45 10.10 -39.26 -0.40 -0.85 16 18 C -0.15 -1.43 10.00 -39.54 -0.40 -1.82 16 19 C 0.11 1.21 7.29 -39.38 -0.29 0.92 16 20 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 21 C -0.12 -1.50 10.03 -39.48 -0.40 -1.89 16 22 C 0.02 0.37 7.41 -38.70 -0.29 0.08 16 23 O -0.20 -3.39 8.34 2.26 0.02 -3.37 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.77 5.92 -51.93 -0.31 0.46 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 28 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -29.29 295.04 -7.17 -36.46 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.19 Total: -2.53 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.19 Total: -15.09 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.64 Total: -33.99 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.02 Total: -3.37 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.26 Total: -0.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.29 -7.17 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919854484.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.839 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds