Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47711 * 2 1 4 4 C 1.53004 * 109.47070 * 120.00187 * 2 1 3 5 5 C 1.50701 * 109.47211 * 185.00010 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 S 1.81004 * 109.47052 * 239.99698 * 2 1 3 14 14 C 1.76199 * 100.00092 * 65.00100 * 13 2 1 15 15 N 1.30908 * 124.96796 * 359.70253 * 14 13 2 16 16 C 1.36196 * 108.68328 * 179.83510 * 15 14 13 17 17 C 1.39544 * 133.61957 * 180.13875 * 16 15 14 18 18 C 1.37772 * 119.76185 * 180.34054 * 17 16 15 19 19 C 1.38826 * 120.36319 * 359.96051 * 18 17 16 20 20 F 1.35098 * 119.79253 * 180.02562 * 19 18 17 21 21 C 1.38209 * 120.41022 * 0.02562 * 19 18 17 22 22 C 1.38538 * 119.88710 * 359.97438 * 21 19 18 23 23 O 1.34524 * 124.97009 * 179.97438 * 14 13 2 24 24 H 1.08998 * 109.47711 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46991 * 300.00620 * 1 2 3 26 26 H 1.09004 * 109.46837 * 59.99882 * 1 2 3 27 27 H 1.09000 * 109.47211 * 64.99037 * 4 2 1 28 28 H 1.09007 * 109.46376 * 304.99579 * 4 2 1 29 29 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 30 30 H 1.08004 * 120.12044 * 0.30387 * 17 16 15 31 31 H 1.08007 * 119.81850 * 179.97438 * 18 17 16 32 32 H 1.08001 * 120.05866 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2307 -1.1981 2.3551 8 7 3.5767 -1.8422 3.2968 9 14 6.0930 -1.0730 2.4296 10 1 6.4911 0.3564 2.4916 11 1 6.5884 -1.7771 3.6397 12 1 6.6802 -1.6983 1.2174 13 16 2.1333 -0.8533 -1.4779 14 6 1.5439 0.2421 -2.7258 15 7 0.8618 1.3368 -2.5020 16 6 0.5812 1.9278 -3.6965 17 6 -0.1003 3.0904 -4.0588 18 6 -0.2242 3.4239 -5.3898 19 6 0.3257 2.6104 -6.3712 20 9 0.1978 2.9487 -7.6728 21 6 1.0032 1.4566 -6.0248 22 6 1.1360 1.1082 -4.6906 23 8 1.7246 0.0731 -4.0481 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7515 -1.7715 1.2057 28 1 1.6053 -0.2617 2.1370 29 1 4.0614 -2.2527 4.0299 30 1 -0.5297 3.7261 -3.2986 31 1 -0.7519 4.3233 -5.6713 32 1 1.4292 0.8281 -6.7929 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919854485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = -14.462461 kcal Electronic energy + Delta-G solvation = -18583.469633 eV Core-core repulsion = 15358.227572 eV Total energy + Delta-G solvation = -3225.242061 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.18267 -43.10786 -37.87245 -35.05051 -34.34493 -32.16035 -31.02286 -29.49411 -27.55470 -24.34685 -23.43500 -23.21213 -22.10928 -20.79909 -18.67103 -18.11513 -17.14141 -16.85724 -16.47074 -16.12950 -15.73876 -15.15706 -14.88733 -14.57664 -14.38869 -13.47672 -13.19924 -13.11290 -12.73784 -12.38765 -11.97689 -11.75982 -11.65136 -11.56632 -11.35114 -10.87938 -10.71727 -10.65225 -10.39265 -9.71529 -9.65759 -9.34863 -9.18944 -8.88321 -8.49423 -7.30633 -6.14467 -4.18352 0.39726 0.90867 1.04948 2.19140 2.49499 2.89328 3.28755 3.33050 3.33847 3.36246 4.01559 4.29759 4.36549 4.44910 4.69488 4.81269 5.16334 5.23181 5.49950 5.58036 5.69171 5.70727 5.77867 5.88869 6.00104 6.04401 6.37579 6.40744 6.48016 6.66526 7.37298 7.40689 7.44188 7.81512 8.15227 8.86224 9.47229 10.96164 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.034260 B = 0.003706 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.075028 B = 7553.156740 C = 7873.519070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 H 0.097 0.903 4 C 0.038 3.962 5 C -0.531 4.531 6 H 0.064 0.936 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.274 1.274 13 S 0.083 5.917 14 C 0.231 3.769 15 N -0.489 5.489 16 C 0.035 3.965 17 C -0.040 4.040 18 C -0.148 4.148 19 C 0.110 3.890 20 F -0.132 7.132 21 C -0.124 4.124 22 C 0.024 3.976 23 O -0.195 6.195 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 7.176 -15.398 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 H 0.115 0.885 4 C -0.001 4.001 5 C -0.570 4.570 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.199 1.199 13 S 0.317 5.683 14 C -0.085 4.085 15 N -0.224 5.224 16 C -0.080 4.080 17 C -0.060 4.060 18 C -0.168 4.168 19 C 0.090 3.910 20 F -0.110 7.110 21 C -0.144 4.144 22 C -0.030 4.030 23 O -0.089 6.089 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.116 6.224 -14.725 17.499 hybrid contribution 0.604 0.932 -0.691 1.309 sum -6.512 7.156 -15.416 18.201 Atomic orbital electron populations 1.22154 0.93782 1.02204 1.02795 1.23901 0.98034 1.03195 0.94343 0.88505 1.19127 0.96627 0.95757 0.88610 1.21221 0.91358 1.35381 1.09009 0.91803 1.24978 0.98710 0.94844 0.95395 1.69931 1.35958 1.35041 1.12008 0.86622 0.85288 0.78426 0.77587 1.20079 1.21223 1.19922 1.86712 1.64817 1.24690 0.92031 1.29584 0.95919 0.97839 0.85163 1.71392 1.18788 1.07473 1.24725 1.20051 1.01645 0.97586 0.88678 1.20109 0.96607 0.93762 0.95538 1.20954 1.03095 1.01228 0.91561 1.16993 1.00794 0.94783 0.78460 1.91520 1.94211 1.91915 1.33382 1.19485 1.04141 0.98189 0.92565 1.19834 0.99417 0.89259 0.94474 1.84702 1.63554 1.41857 1.18751 0.92380 0.91619 0.91585 0.95262 0.93675 0.92638 0.83623 0.83492 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.00 37.16 0.33 -2.19 16 2 C -0.07 -1.29 2.25 -26.73 -0.06 -1.35 16 3 H 0.10 1.95 8.13 -51.92 -0.42 1.53 16 4 C 0.04 0.89 4.44 -27.88 -0.12 0.77 16 5 C -0.53 -13.91 8.53 -34.44 -0.29 -14.20 16 6 H 0.06 1.64 7.60 -52.49 -0.40 1.24 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 S 0.08 1.54 21.06 -107.50 -2.26 -0.72 16 14 C 0.23 4.07 8.07 52.37 0.42 4.50 16 15 N -0.49 -8.47 8.68 -11.45 -0.10 -8.56 16 16 C 0.03 0.53 7.23 -84.68 -0.61 -0.09 16 17 C -0.04 -0.46 10.10 -39.27 -0.40 -0.85 16 18 C -0.15 -1.44 10.00 -39.53 -0.40 -1.83 16 19 C 0.11 1.20 7.29 -39.37 -0.29 0.91 16 20 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 21 C -0.12 -1.48 10.03 -39.48 -0.40 -1.88 16 22 C 0.02 0.36 7.41 -38.71 -0.29 0.07 16 23 O -0.20 -3.28 10.79 2.27 0.02 -3.25 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.09 5.84 -51.93 -0.30 0.78 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -28.25 298.38 -7.50 -35.75 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.22 Total: -3.08 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.19 Total: -14.53 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.64 Total: -33.13 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.02 Total: -3.25 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.26 Total: -0.72 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.25 -7.50 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919854485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.283 kcal (2) G-P(sol) polarization free energy of solvation -28.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds