Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99947 * 3 2 1 5 5 H 1.48505 * 109.47124 * 30.00020 * 3 2 1 6 6 H 1.48493 * 109.47082 * 149.99771 * 3 2 1 7 7 C 1.38810 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99506 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.47591 * 134.49126 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11599 * 155.35282 * 10 9 7 12 12 N 1.46508 * 113.73965 * 137.94774 * 11 10 9 13 13 C 1.34773 * 119.99492 * 156.92137 * 12 11 10 14 14 O 1.21520 * 120.00414 * 0.02562 * 13 12 11 15 15 C 1.48079 * 119.99480 * 180.02562 * 13 12 11 16 16 C 1.39872 * 120.93538 * 0.29841 * 15 13 12 17 17 C 1.38077 * 119.01710 * 180.29801 * 16 15 13 18 18 N 1.31841 * 120.94223 * 359.67614 * 17 16 15 19 19 C 1.31756 * 122.07404 * 0.02562 * 18 17 16 20 20 C 1.38359 * 120.87122 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 120.51844 * 179.97438 * 20 19 18 22 22 C 1.47812 * 134.46001 * 359.86386 * 9 7 2 23 23 H 0.97006 * 119.99747 * 0.02562 * 1 2 3 24 24 H 1.09002 * 113.76873 * 41.05035 * 10 9 7 25 25 H 1.09003 * 113.76570 * 269.65584 * 10 9 7 26 26 H 1.08995 * 113.74600 * 269.15325 * 11 10 9 27 27 H 0.96998 * 120.00008 * 336.93100 * 12 11 10 28 28 H 1.08002 * 120.48832 * 0.02562 * 16 15 13 29 29 H 1.08005 * 119.52712 * 179.70250 * 17 16 15 30 30 H 1.08001 * 119.56319 * 179.97438 * 19 18 17 31 31 H 1.08993 * 113.77383 * 90.38232 * 22 9 7 32 32 H 1.08999 * 113.83387 * 318.91871 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8102 0.0005 11 6 0.3470 -4.0829 0.6411 12 7 -0.3335 -5.2613 0.0981 13 6 -1.2733 -5.8930 0.8290 14 8 -1.5565 -5.4849 1.9380 15 6 -1.9606 -7.0844 0.2805 16 6 -1.6456 -7.5744 -0.9911 17 6 -2.3156 -8.6844 -1.4661 18 7 -3.2357 -9.2843 -0.7369 19 6 -3.5598 -8.8605 0.4678 20 6 -2.9390 -7.7554 1.0225 21 17 -3.3737 -7.2045 2.6103 22 6 -0.1058 -2.7570 0.0026 23 1 -0.4850 0.8401 -0.0004 24 1 2.5624 -4.0324 0.6557 25 1 1.8317 -4.2351 -0.9970 26 1 0.3595 -4.0639 1.7308 27 1 -0.1075 -5.5869 -0.7872 28 1 -0.8925 -7.0891 -1.5943 29 1 -2.0822 -9.0669 -2.4488 30 1 -4.3201 -9.3827 1.0297 31 1 -0.5313 -2.8722 -0.9942 32 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031000690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = 63.898087 kcal Electronic energy + Delta-G solvation = -18907.726657 eV Core-core repulsion = 15703.758819 eV Total energy + Delta-G solvation = -3203.967838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79301 -39.24973 -37.55877 -36.63653 -33.89323 -32.77453 -31.72623 -31.30624 -27.60714 -25.24694 -24.90181 -23.87157 -22.89685 -20.76171 -19.81350 -18.17188 -17.06791 -16.78946 -16.41146 -15.70396 -15.39809 -15.22026 -14.85359 -14.38933 -14.03708 -13.84708 -13.74255 -12.76575 -12.47094 -12.10192 -11.99275 -11.54537 -11.51820 -11.24628 -10.92367 -10.83114 -10.52406 -10.34224 -10.12989 -10.06688 -9.60952 -9.39782 -9.24380 -8.86079 -8.56630 -6.98250 -5.82246 -3.16739 0.35239 0.58226 1.90706 2.84034 3.14779 3.37016 3.41670 3.44041 3.52083 4.02860 4.28877 4.35440 4.44977 4.55642 4.82150 5.06239 5.17503 5.38201 5.41893 5.48608 5.49864 5.92919 6.04937 6.12348 6.30932 6.46613 6.61378 7.16950 7.26328 7.42500 7.48789 7.68053 7.91019 8.30909 8.97556 9.64093 10.49227 11.34416 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.003695 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.132779 B = 7576.673521 C = 8035.578551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.705 5.705 13 C 0.547 3.453 14 O -0.508 6.508 15 C -0.076 4.076 16 C -0.130 4.130 17 C 0.096 3.904 18 N -0.459 5.459 19 C 0.107 3.893 20 C -0.046 4.046 21 Cl -0.015 7.015 22 C 0.154 3.846 23 H 0.255 0.745 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.114 0.886 27 H 0.395 0.605 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.170 0.830 31 H 0.029 0.971 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 -18.740 -1.957 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.012 4.012 12 N -0.356 5.356 13 C 0.331 3.669 14 O -0.383 6.383 15 C -0.088 4.088 16 C -0.151 4.151 17 C -0.061 4.061 18 N -0.168 5.168 19 C -0.051 4.051 20 C -0.076 4.076 21 Cl 0.015 6.985 22 C 0.028 3.972 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.132 0.868 27 H 0.230 0.770 28 H 0.167 0.833 29 H 0.186 0.814 30 H 0.187 0.813 31 H 0.047 0.953 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.734 -18.708 -1.315 19.611 hybrid contribution 0.957 1.554 -0.272 1.845 sum -4.777 -17.153 -1.588 17.877 Atomic orbital electron populations 1.69828 1.05079 1.25590 1.55940 1.24823 0.95692 0.97682 1.01990 0.86086 0.78650 0.83211 0.77589 1.21536 1.21521 1.20499 1.18982 0.90268 0.81556 1.44726 0.89986 1.45707 1.02355 0.99140 1.86062 1.22871 0.94521 0.86937 0.97059 1.24030 0.93365 0.83713 1.00124 1.46076 1.39213 1.30770 1.19578 1.17989 0.80574 0.82680 0.85680 1.90876 1.62969 1.65519 1.18897 1.20514 0.96725 0.96833 0.94716 1.22443 1.00616 0.97398 0.94616 1.22849 0.91419 0.92067 0.99722 1.67676 1.13865 1.29873 1.05414 1.22847 0.98132 0.92426 0.91732 1.22304 0.97747 0.97028 0.90532 1.98441 1.91193 1.88709 1.20201 1.22723 0.88230 0.88986 0.97248 0.93463 0.93082 0.94714 0.86844 0.77016 0.83328 0.81424 0.81291 0.95322 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.39 55.49 0.63 -26.60 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.31 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -15.22 3.70 -177.84 -0.66 -15.88 16 10 C 0.11 2.17 8.69 -2.96 -0.03 2.14 16 11 C 0.09 1.72 4.40 -70.12 -0.31 1.41 16 12 N -0.71 -10.30 5.33 -56.19 -0.30 -10.60 16 13 C 0.55 8.45 7.79 -12.22 -0.10 8.35 16 14 O -0.51 -9.62 13.79 5.35 0.07 -9.55 16 15 C -0.08 -0.94 5.91 -104.62 -0.62 -1.55 16 16 C -0.13 -1.17 9.61 -39.03 -0.38 -1.54 16 17 C 0.10 0.80 11.17 -17.61 -0.20 0.60 16 18 N -0.46 -4.64 10.33 -13.27 -0.14 -4.78 16 19 C 0.11 1.07 10.99 -17.54 -0.19 0.88 16 20 C -0.05 -0.55 6.38 -38.90 -0.25 -0.80 16 21 Cl -0.01 -0.20 26.24 -51.86 -1.36 -1.56 16 22 C 0.15 3.61 7.33 -2.83 -0.02 3.59 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 26 H 0.11 2.31 7.51 -51.93 -0.39 1.92 16 27 H 0.40 4.46 6.85 -40.82 -0.28 4.18 16 28 H 0.15 0.93 6.54 -52.49 -0.34 0.59 16 29 H 0.17 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 2.10 7.16 -51.93 -0.37 1.73 16 LS Contribution 294.83 15.07 4.44 4.44 Total: -1.00 -33.30 294.83 -7.71 -41.02 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.04 Total: 0.21 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.34 Total: 6.37 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.46 Total: -57.86 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.36 Total: -1.56 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.30 -7.71 -41.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031000690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.914 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds