Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 H 1.09003 * 109.46787 * 305.83073 * 3 2 1 5 5 C 1.50694 * 109.47254 * 185.83543 * 3 2 1 6 6 H 1.08008 * 120.00035 * 334.07382 * 5 3 2 7 7 C 1.37878 * 120.00316 * 154.07582 * 5 3 2 8 8 N 1.31514 * 119.99944 * 6.24618 * 7 5 3 9 9 Si 1.86794 * 120.00175 * 186.25251 * 7 5 3 10 10 H 1.48507 * 109.47256 * 269.99461 * 9 7 5 11 11 H 1.48496 * 109.47393 * 29.99499 * 9 7 5 12 12 H 1.48500 * 109.47181 * 149.99977 * 9 7 5 13 13 N 1.46499 * 109.47195 * 65.83113 * 3 2 1 14 14 C 1.38579 * 120.00011 * 275.00323 * 13 3 2 15 15 N 1.32973 * 120.67045 * 359.72419 * 14 13 3 16 16 C 1.32170 * 121.35543 * 179.71173 * 15 14 13 17 17 Cl 1.73591 * 118.90015 * 180.29096 * 16 15 14 18 18 N 1.31723 * 122.20182 * 0.58122 * 16 15 14 19 19 C 1.33338 * 120.38166 * 359.70994 * 18 16 15 20 20 C 1.46275 * 135.17345 * 180.02562 * 19 18 16 21 21 C 1.34329 * 106.24063 * 179.97438 * 20 19 18 22 22 O 1.34305 * 110.04721 * 0.02562 * 21 20 19 23 23 C 1.34586 * 110.79279 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47263 * 300.00417 * 1 2 3 26 26 H 1.09007 * 109.47021 * 60.00287 * 1 2 3 27 27 H 1.08998 * 109.47263 * 239.99583 * 2 1 3 28 28 H 1.09007 * 109.47021 * 119.99713 * 2 1 3 29 29 H 0.97007 * 119.99532 * 355.17742 * 8 7 5 30 30 H 0.97001 * 119.99869 * 94.99976 * 13 3 2 31 31 H 1.08008 * 126.88077 * 359.97438 * 20 19 18 32 32 H 1.07997 * 124.97904 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5939 1.9856 -0.8332 5 6 3.5400 1.4450 -0.1444 6 1 4.1154 0.5912 0.1821 7 6 4.1780 2.5370 -0.6934 8 7 3.4942 3.6239 -0.9775 9 14 6.0135 2.4728 -1.0339 10 1 6.7555 2.9521 0.1599 11 1 6.4124 1.0747 -1.3361 12 1 6.3321 3.3407 -2.1960 13 7 1.6697 2.0915 1.2601 14 6 0.4198 2.6737 1.3985 15 7 -0.4517 2.6559 0.3943 16 6 -1.6494 3.2021 0.5133 17 17 -2.7396 3.1356 -0.8359 18 7 -2.0414 3.8001 1.6196 19 6 -1.2280 3.8684 2.6739 20 6 -1.3198 4.4328 4.0202 21 6 -0.1461 4.1702 4.6185 22 8 0.6600 3.5018 3.7775 23 6 0.0518 3.2968 2.5945 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.5305 3.6334 -0.8666 30 1 2.2993 2.1135 1.9977 31 1 -2.1625 4.9559 4.4477 32 1 0.1116 4.4549 5.6279 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049819.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = 44.478903 kcal Electronic energy + Delta-G solvation = -19921.517817 eV Core-core repulsion = 16716.707900 eV Total energy + Delta-G solvation = -3204.809917 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.49844 -39.48975 -36.97830 -36.31821 -33.70517 -32.30323 -31.84369 -31.01151 -29.30725 -26.60939 -23.93020 -23.55693 -22.84595 -21.09750 -20.31165 -18.68847 -17.86870 -17.17878 -16.61894 -16.33213 -15.22742 -14.65104 -14.57572 -14.09859 -13.90880 -13.44910 -13.14540 -12.97317 -12.79880 -12.39309 -11.63785 -11.28301 -11.20192 -11.11453 -11.07376 -10.88803 -10.75670 -10.45290 -10.25859 -9.90100 -9.16898 -8.90559 -8.87896 -8.81334 -8.65306 -7.23799 -6.68271 -4.50465 1.15270 1.32317 1.73492 2.49273 2.82073 3.27708 3.32077 3.48817 3.75753 4.10152 4.19528 4.30160 4.63871 4.92353 5.17171 5.20453 5.51425 5.68454 5.92720 5.95734 6.06476 6.19044 6.26756 6.58953 6.71582 6.81349 6.84102 6.98717 7.19327 7.22825 7.61880 7.97375 8.10785 8.24202 8.52504 8.66422 9.30182 10.69322 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.006573 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.821500 B = 4258.828843 C = 5097.855435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.239 3.761 4 H 0.065 0.935 5 C -0.608 4.608 6 H 0.059 0.941 7 C 0.032 3.968 8 N -0.882 5.882 9 Si 1.073 2.927 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.655 5.655 14 C 0.497 3.503 15 N -0.546 5.546 16 C 0.405 3.595 17 Cl 0.012 6.988 18 N -0.542 5.542 19 C 0.148 3.852 20 C -0.212 4.212 21 C 0.033 3.967 22 O -0.173 6.173 23 C -0.132 4.132 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.278 0.722 30 H 0.402 0.598 31 H 0.165 0.835 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 -0.646 7.933 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.140 3.860 4 H 0.083 0.917 5 C -0.647 4.647 6 H 0.077 0.923 7 C -0.178 4.178 8 N -0.514 5.514 9 Si 0.900 3.100 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.283 5.283 14 C 0.244 3.756 15 N -0.280 5.280 16 C 0.108 3.892 17 Cl 0.040 6.960 18 N -0.269 5.269 19 C 0.015 3.985 20 C -0.233 4.233 21 C -0.037 4.037 22 O -0.070 6.070 23 C -0.190 4.190 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.240 0.760 31 H 0.182 0.818 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -6.174 0.027 6.431 8.915 hybrid contribution -0.886 -0.674 1.496 1.865 sum -7.059 -0.647 7.927 10.635 Atomic orbital electron populations 1.21856 0.96988 0.98762 1.02041 1.21818 0.94269 0.98693 1.00737 1.19228 0.95262 0.88974 0.82519 0.91735 1.22158 0.91081 1.05994 1.45447 0.92252 1.26089 1.07293 0.91771 0.92635 1.70738 1.10228 1.27180 1.43285 0.83490 0.73511 0.75850 0.77177 1.21245 1.21018 1.20698 1.47505 1.08521 1.53046 1.19180 1.17907 0.88270 0.86422 0.83012 1.67770 1.03294 1.28122 1.28824 1.22263 0.87379 0.91378 0.88160 1.98388 1.60338 1.96683 1.40606 1.67146 1.36594 1.24134 0.99070 1.20391 0.88754 0.95760 0.93559 1.22117 1.00500 1.08918 0.91759 1.24202 0.89116 0.94657 0.95701 1.83906 1.41050 1.61880 1.20139 1.20690 0.96587 1.12571 0.89159 0.95096 0.94049 0.92101 0.91849 0.93722 0.91004 0.76031 0.81790 0.76905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.47 37.16 0.31 -2.32 16 2 C -0.12 -2.37 5.58 -26.73 -0.15 -2.52 16 3 C 0.24 5.54 1.82 -69.08 -0.13 5.41 16 4 H 0.06 1.68 6.35 -51.93 -0.33 1.35 16 5 C -0.61 -15.35 8.49 -34.44 -0.29 -15.64 16 6 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 7 C 0.03 0.84 5.45 -17.82 -0.10 0.75 16 8 N -0.88 -24.97 13.63 55.43 0.76 -24.22 16 9 Si 1.07 23.21 29.91 -169.99 -5.08 18.13 16 10 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.66 -14.11 5.15 -54.86 -0.28 -14.39 16 14 C 0.50 10.42 6.09 -154.69 -0.94 9.47 16 15 N -0.55 -11.48 6.59 -10.81 -0.07 -11.55 16 16 C 0.40 8.00 8.17 -91.89 -0.75 7.25 16 17 Cl 0.01 0.20 29.26 -51.86 -1.52 -1.31 16 18 N -0.54 -10.58 10.46 -8.55 -0.09 -10.67 16 19 C 0.15 2.71 7.59 -83.18 -0.63 2.08 16 20 C -0.21 -2.87 11.13 -37.73 -0.42 -3.29 16 21 C 0.03 0.39 11.97 29.35 0.35 0.74 16 22 O -0.17 -2.83 10.57 4.93 0.05 -2.78 16 23 C -0.13 -2.54 7.34 -38.19 -0.28 -2.82 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.82 5.58 -51.93 -0.29 0.53 16 26 H 0.06 1.19 7.75 -51.93 -0.40 0.79 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.28 8.05 6.77 -40.82 -0.28 7.77 16 30 H 0.40 8.37 8.61 -40.82 -0.35 8.02 16 31 H 0.16 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.21 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -29.12 292.44 -7.82 -36.94 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -2.97 Total: 6.33 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -3.02 Total: -0.89 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.31 Total: -60.83 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.05 Total: -2.78 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.08 Total: 18.13 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.12 -7.82 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049819.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.420 kcal (2) G-P(sol) polarization free energy of solvation -29.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds