Wall clock time and date at job start Tue Mar 31 2020 05:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21519 * 120.00026 * 2 1 4 4 C 1.40310 * 119.99895 * 179.97438 * 2 1 3 5 5 C 1.35445 * 119.99912 * 185.50120 * 4 2 1 6 6 C 1.50703 * 119.99837 * 183.86069 * 5 4 2 7 7 N 1.36569 * 120.00074 * 3.85997 * 5 4 2 8 8 C 1.38880 * 119.99898 * 119.99263 * 7 5 4 9 9 C 1.39952 * 120.44364 * 353.72473 * 8 7 5 10 10 C 1.38884 * 118.59329 * 180.27708 * 9 8 7 11 11 Cl 1.73602 * 120.34375 * 180.02562 * 10 9 8 12 12 N 1.32166 * 119.31512 * 0.02562 * 10 9 8 13 13 C 1.33438 * 120.84881 * 359.97438 * 12 10 9 14 14 C 1.41572 * 119.23830 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00071 * 179.97438 * 14 13 12 16 16 C 1.40055 * 120.00223 * 359.97438 * 14 13 12 17 17 N 1.30695 * 119.99556 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00240 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46913 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47097 * 120.00462 * 18 16 14 21 21 H 1.48503 * 109.46895 * 240.00398 * 18 16 14 22 22 N 1.32539 * 120.44253 * 174.00367 * 8 7 5 23 23 H 1.09001 * 109.47139 * 270.00428 * 1 2 3 24 24 H 1.09001 * 109.47152 * 29.99798 * 1 2 3 25 25 H 1.09001 * 109.47367 * 150.00201 * 1 2 3 26 26 H 1.08003 * 119.99733 * 5.50467 * 4 2 1 27 27 H 1.09006 * 109.47045 * 267.71352 * 6 5 4 28 28 H 1.09001 * 109.47258 * 27.70930 * 6 5 4 29 29 H 1.09003 * 109.46911 * 147.71374 * 6 5 4 30 30 H 0.97003 * 120.00381 * 299.99071 * 7 5 4 31 31 H 1.07999 * 120.70537 * 0.25028 * 9 8 7 32 32 H 0.97008 * 119.99747 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0524 0.0000 4 6 2.2085 -1.2151 0.0005 5 6 3.5583 -1.2178 0.1130 6 6 4.3191 -2.5158 0.0262 7 7 4.2298 -0.0442 0.3050 8 6 5.0063 0.1334 1.4427 9 6 5.0044 -0.8280 2.4597 10 6 5.7908 -0.6086 3.5832 11 17 5.8233 -1.7715 4.8717 12 7 6.5142 0.4948 3.6613 13 6 6.4973 1.3952 2.6766 14 6 7.2859 2.5649 2.7956 15 1 7.2818 3.3015 2.0059 16 6 8.0714 2.7668 3.9374 17 7 8.0767 1.8751 4.8929 18 14 9.1114 4.3106 4.0948 19 1 8.9298 5.1549 2.8868 20 1 8.6891 5.0714 5.2980 21 1 10.5417 3.9327 4.2248 22 7 5.7547 1.2183 1.5822 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.6722 -2.1483 -0.0888 27 1 4.4528 -2.9262 1.0272 28 1 3.7602 -3.2243 -0.5852 29 1 5.2944 -2.3358 -0.4259 30 1 4.1645 0.6653 -0.3533 31 1 4.4039 -1.7214 2.3729 32 1 8.6211 2.0147 5.6836 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163733358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:11 Heat of formation + Delta-G solvation = 29.986618 kcal Electronic energy + Delta-G solvation = -19226.199069 eV Core-core repulsion = 16020.760720 eV Total energy + Delta-G solvation = -3205.438349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.98638 -38.90603 -36.71362 -35.66051 -33.79308 -32.45153 -31.08885 -30.24478 -29.25587 -27.53305 -26.41189 -22.64899 -22.18014 -20.79846 -19.05752 -18.12968 -16.59572 -16.31663 -15.65611 -15.42328 -14.80377 -14.61116 -14.34496 -13.82057 -13.56107 -13.31205 -12.99345 -12.86815 -12.61190 -12.37658 -12.05285 -11.94148 -11.48241 -11.44897 -11.33955 -10.89978 -10.44512 -10.40019 -10.27439 -9.48791 -9.20991 -9.13611 -8.95786 -8.33137 -7.60668 -7.33337 -6.65419 -4.87946 1.07810 2.42074 2.83471 2.87587 3.03182 3.05595 3.09536 3.19654 3.73813 3.86047 4.49236 4.54208 5.10943 5.30353 5.39891 5.50803 5.56701 5.59799 5.74852 5.79609 5.84902 6.02625 6.11038 6.29324 6.35169 6.52650 6.70146 6.90468 7.09134 7.68588 7.93319 8.01786 8.09969 8.38716 8.50915 8.92870 9.98525 10.13635 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.005426 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.982095 B = 5159.459578 C = 6135.482119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.375 3.625 3 O -0.475 6.475 4 C -0.324 4.324 5 C 0.259 3.741 6 C -0.145 4.145 7 N -0.658 5.658 8 C 0.449 3.551 9 C -0.401 4.401 10 C 0.269 3.731 11 Cl -0.077 7.077 12 N -0.520 5.520 13 C 0.429 3.571 14 C -0.387 4.387 15 H 0.099 0.901 16 C 0.064 3.936 17 N -0.699 5.699 18 Si 0.921 3.079 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.271 1.271 22 N -0.625 5.625 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.418 0.582 31 H 0.116 0.884 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 -7.411 -5.798 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.258 3.742 3 O -0.355 6.355 4 C -0.347 4.347 5 C 0.156 3.844 6 C -0.203 4.203 7 N -0.290 5.290 8 C 0.204 3.796 9 C -0.434 4.434 10 C 0.088 3.912 11 Cl -0.050 7.050 12 N -0.241 5.241 13 C 0.194 3.806 14 C -0.422 4.422 15 H 0.117 0.883 16 C -0.165 4.165 17 N -0.319 5.319 18 Si 0.745 3.255 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.196 1.196 22 N -0.353 5.353 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.154 0.846 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.260 0.740 31 H 0.134 0.866 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.613 -6.196 -5.295 10.496 hybrid contribution -0.336 -0.295 -0.016 0.447 sum -6.949 -6.491 -5.311 10.892 Atomic orbital electron populations 1.22163 0.95480 1.03693 1.03907 1.20632 0.91636 0.88820 0.73067 1.90601 1.71505 1.35147 1.38213 1.22242 0.93524 1.00197 1.18782 1.20384 0.90830 0.87822 0.85336 1.21486 1.00825 0.93943 1.04092 1.41399 1.49060 1.15988 1.22565 1.18014 0.87172 0.89872 0.84508 1.21035 1.17467 1.05888 0.98976 1.21443 0.92425 0.90850 0.86527 1.98300 1.97551 1.56964 1.52142 1.68611 1.23595 1.01735 1.30148 1.19498 0.88512 0.91432 0.81133 1.19459 1.18373 1.01405 1.02921 0.88335 1.26160 0.96942 0.98371 0.95004 1.70152 1.26912 1.30682 1.04185 0.86034 0.79205 0.80657 0.79653 1.18033 1.19560 1.19562 1.68156 1.15866 1.22798 1.28485 0.89428 0.90491 0.90425 0.84555 0.88984 0.90082 0.90324 0.73970 0.86643 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 10.21 36.01 0.37 -1.68 16 2 C 0.37 5.53 6.97 -33.53 -0.23 5.30 16 3 O -0.47 -9.13 14.72 5.35 0.08 -9.05 16 4 C -0.32 -4.24 9.31 -39.80 -0.37 -4.61 16 5 C 0.26 3.88 5.24 -81.48 -0.43 3.46 16 6 C -0.15 -1.73 9.38 36.01 0.34 -1.39 16 7 N -0.66 -12.59 3.88 -8.13 -0.03 -12.62 16 8 C 0.45 10.46 7.57 -154.71 -1.17 9.29 16 9 C -0.40 -9.01 8.72 -38.70 -0.34 -9.34 16 10 C 0.27 6.62 7.33 -17.17 -0.13 6.49 16 11 Cl -0.08 -1.61 29.15 -51.86 -1.51 -3.12 16 12 N -0.52 -14.41 7.86 -9.82 -0.08 -14.49 16 13 C 0.43 12.08 7.37 -158.35 -1.17 10.92 16 14 C -0.39 -10.44 9.37 -37.63 -0.35 -10.79 16 15 H 0.10 2.56 7.85 -52.49 -0.41 2.14 16 16 C 0.06 1.58 5.50 -17.35 -0.10 1.49 16 17 N -0.70 -18.17 11.42 55.55 0.63 -17.54 16 18 Si 0.92 18.23 29.56 -169.99 -5.02 13.21 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 N -0.63 -16.64 10.39 -11.84 -0.12 -16.76 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.09 1.13 6.36 -51.93 -0.33 0.80 16 28 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.42 8.17 7.47 -40.82 -0.31 7.87 16 31 H 0.12 2.24 5.42 -52.49 -0.28 1.96 16 32 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -31.31 299.28 -8.11 -39.42 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -3.00 Total: 7.32 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -3.57 Total: 9.12 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.40 Total: -61.41 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.51 Total: -3.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.31 -8.11 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163733358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds