Wall clock time and date at job start Tue Mar 31 2020 05:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86797 * 119.99648 * 2 1 4 4 H 1.48497 * 109.47598 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47004 * 120.00231 * 3 2 1 6 6 H 1.48497 * 109.47124 * 239.99781 * 3 2 1 7 7 C 1.40121 * 119.99876 * 179.72589 * 2 1 3 8 8 H 1.07996 * 119.99974 * 355.43499 * 7 2 1 9 9 C 1.40821 * 119.99666 * 175.44205 * 7 2 1 10 10 N 1.33911 * 120.27871 * 6.89742 * 9 7 2 11 11 C 1.31716 * 119.89196 * 179.97438 * 10 9 7 12 12 C 1.38959 * 120.47843 * 359.97438 * 11 10 9 13 13 N 1.32236 * 120.57166 * 0.02562 * 12 11 10 14 14 C 1.32624 * 120.08259 * 359.68589 * 13 12 11 15 15 N 1.37946 * 120.23420 * 180.27625 * 14 13 12 16 16 C 1.46502 * 120.00170 * 0.29071 * 15 14 13 17 17 H 1.09004 * 109.40691 * 35.13804 * 16 15 14 18 18 C 1.49579 * 109.41410 * 275.34056 * 16 15 14 19 19 C 1.30319 * 119.15751 * 258.52463 * 18 16 15 20 20 S 1.77804 * 107.56469 * 359.66753 * 19 18 16 21 21 O 1.42098 * 105.57451 * 230.90414 * 20 19 18 22 22 O 1.42109 * 105.60426 * 100.44712 * 20 19 18 23 23 C 1.54942 * 109.41210 * 154.99890 * 16 15 14 24 24 H 0.97008 * 120.00168 * 174.85169 * 1 2 3 25 25 H 1.08002 * 119.75535 * 180.02562 * 11 10 9 26 26 H 1.08006 * 119.71396 * 180.02562 * 12 11 10 27 27 H 0.97004 * 119.99557 * 180.28316 * 15 14 13 28 28 H 1.07999 * 120.41954 * 78.49582 * 18 16 15 29 29 H 1.08001 * 126.21834 * 179.67193 * 19 18 16 30 30 H 1.09006 * 111.33436 * 212.66398 * 23 16 15 31 31 H 1.08998 * 111.33524 * 337.37564 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 1.2763 2.7465 0.0006 5 1 3.0950 1.6964 1.2125 6 1 3.0950 1.6965 -1.2125 7 6 2.0079 -1.2135 0.0058 8 1 1.4705 -2.1469 0.0847 9 6 3.4128 -1.2158 -0.0911 10 7 4.0943 -0.0638 -0.0503 11 6 5.4083 -0.0749 -0.1411 12 6 6.0952 -1.2750 -0.2787 13 7 5.4409 -2.4234 -0.3211 14 6 4.1182 -2.4388 -0.2259 15 7 3.4329 -3.6354 -0.2641 16 6 4.1668 -4.8957 -0.4039 17 1 5.1139 -4.8245 0.1310 18 6 4.4335 -5.1577 -1.8522 19 6 3.6875 -6.0149 -2.4902 20 16 2.4991 -6.6571 -1.3340 21 8 2.5821 -8.0711 -1.4474 22 8 1.2936 -5.9505 -1.5928 23 6 3.3240 -6.0511 0.1923 24 1 -0.4851 -0.8367 -0.0754 25 1 5.9558 0.8554 -0.1074 26 1 7.1728 -1.2698 -0.3517 27 1 2.4652 -3.6424 -0.1983 28 1 5.2338 -4.6428 -2.3627 29 1 3.7753 -6.2860 -3.5319 30 1 3.9597 -6.8201 0.6314 31 1 2.5975 -5.6801 0.9151 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164008484.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:41 Heat of formation + Delta-G solvation = 2.589080 kcal Electronic energy + Delta-G solvation = -19717.452791 eV Core-core repulsion = 16512.870102 eV Total energy + Delta-G solvation = -3204.582689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72466 -37.93721 -37.04268 -35.93513 -34.32977 -33.85585 -32.22687 -30.52941 -28.63556 -25.95546 -24.62337 -22.45817 -21.64996 -20.41415 -18.87297 -18.72361 -17.66692 -17.03293 -16.71589 -15.72095 -15.34595 -15.22113 -14.59680 -14.30633 -13.98562 -13.63104 -13.51671 -13.09610 -12.94006 -12.77118 -12.49799 -12.16242 -12.04617 -11.67128 -11.24887 -11.13624 -10.88999 -10.49957 -10.28210 -10.21764 -9.87545 -9.49451 -9.21651 -9.15257 -7.85217 -7.40643 -7.27119 -4.85725 -0.00620 1.31520 2.26842 2.49540 2.59889 3.44601 3.52183 3.59190 3.67974 3.92031 3.94923 4.30459 4.38251 4.41547 4.54671 4.93375 5.20239 5.30553 5.40683 5.52584 5.59764 5.63781 5.71937 5.89650 6.09043 6.30821 6.49527 7.12114 7.18722 7.45636 7.64335 7.91860 8.11761 8.36722 8.83800 9.26952 9.81160 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.006034 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.539861 B = 4639.248296 C = 5573.483769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.043 3.957 3 Si 1.157 2.843 4 H -0.330 1.330 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.457 4.457 8 H 0.086 0.914 9 C 0.192 3.808 10 N -0.540 5.540 11 C 0.065 3.935 12 C -0.086 4.086 13 N -0.487 5.487 14 C 0.266 3.734 15 N -0.711 5.711 16 C 0.170 3.830 17 H 0.125 0.875 18 C -0.039 4.039 19 C -0.670 4.670 20 S 2.438 3.562 21 O -0.942 6.942 22 O -0.926 6.926 23 C -0.588 4.588 24 H 0.287 0.713 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.413 0.587 28 H 0.140 0.860 29 H 0.180 0.820 30 H 0.155 0.845 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.580 -9.099 -0.076 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.180 4.180 3 Si 0.992 3.008 4 H -0.263 1.263 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.491 4.491 8 H 0.104 0.896 9 C 0.062 3.938 10 N -0.263 5.263 11 C -0.095 4.095 12 C -0.239 4.239 13 N -0.208 5.208 14 C 0.019 3.981 15 N -0.354 5.354 16 C 0.062 3.938 17 H 0.142 0.858 18 C -0.062 4.062 19 C -0.779 4.779 20 S 2.619 3.381 21 O -0.939 6.939 22 O -0.923 6.923 23 C -0.718 4.718 24 H 0.099 0.901 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.253 0.747 28 H 0.157 0.843 29 H 0.197 0.803 30 H 0.173 0.827 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.715 -8.078 -0.163 9.896 hybrid contribution 0.784 -1.289 -0.192 1.520 sum 6.499 -9.367 -0.354 11.406 Atomic orbital electron populations 1.70634 1.08136 1.33160 1.29091 1.27855 0.95252 1.06187 0.88688 0.81763 0.70459 0.69254 0.79326 1.26324 1.21481 1.21522 1.20590 0.90129 0.96716 1.41712 0.89594 1.19019 0.94619 0.86542 0.93657 1.67147 1.07976 1.26303 1.24886 1.22793 0.91059 0.98047 0.97618 1.22141 0.98781 0.87951 1.14987 1.67249 1.06510 1.30414 1.16584 1.18905 0.89191 0.86231 1.03801 1.43773 1.08004 1.00501 1.83110 1.19985 0.98580 0.84089 0.91184 0.85758 1.23686 0.95854 0.90387 0.96236 1.32609 1.17250 1.12844 1.15207 1.07493 0.76417 0.75273 0.78923 1.93584 1.87045 1.28078 1.85154 1.93675 1.41838 1.74055 1.82739 1.30851 1.13522 1.09006 1.18430 0.90143 0.84712 0.84818 0.74740 0.84266 0.80302 0.82698 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.34 13.65 55.56 0.76 -19.59 16 2 C 0.04 1.11 5.52 -17.31 -0.10 1.02 16 3 Si 1.16 27.26 25.47 -169.99 -4.33 22.93 16 4 H -0.33 -7.72 7.11 56.52 0.40 -7.31 16 5 H -0.29 -6.76 6.99 56.52 0.40 -6.37 16 6 H -0.29 -6.82 6.90 56.52 0.39 -6.43 16 7 C -0.46 -11.42 9.30 -37.90 -0.35 -11.77 16 8 H 0.09 2.06 6.37 -52.49 -0.33 1.72 16 9 C 0.19 4.67 6.43 -84.61 -0.54 4.13 16 10 N -0.54 -13.01 4.73 -10.79 -0.05 -13.06 16 11 C 0.06 1.35 11.21 -17.33 -0.19 1.15 16 12 C -0.09 -1.69 11.22 -17.11 -0.19 -1.88 16 13 N -0.49 -9.97 9.35 -11.67 -0.11 -10.08 16 14 C 0.27 5.72 7.47 -154.81 -1.16 4.57 16 15 N -0.71 -12.70 5.06 -54.05 -0.27 -12.97 16 16 C 0.17 2.32 2.94 -68.59 -0.20 2.11 16 17 H 0.12 1.67 7.55 -51.93 -0.39 1.28 16 18 C -0.04 -0.52 9.68 -36.37 -0.35 -0.88 16 19 C -0.67 -8.37 11.05 29.21 0.32 -8.05 16 20 S 2.44 30.50 6.19 -107.50 -0.66 29.83 16 21 O -0.94 -13.72 18.01 -57.38 -1.03 -14.75 16 22 O -0.93 -15.21 18.02 -57.38 -1.03 -16.25 16 23 C -0.59 -5.87 7.32 38.18 0.28 -5.59 16 24 H 0.29 7.06 8.73 -40.82 -0.36 6.70 16 25 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 26 H 0.13 2.18 8.06 -52.48 -0.42 1.76 16 27 H 0.41 7.37 6.56 -40.82 -0.27 7.10 16 28 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.15 1.37 8.00 -51.93 -0.42 0.96 16 LS Contribution 281.20 15.07 4.24 4.24 Total: -1.00 -32.30 281.20 -7.68 -39.98 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.69 Total: 4.91 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.49 Total: -15.18 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.32 Total: -55.71 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -2.07 Total: -31.00 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -4.33 Total: 22.93 kcal Atomic # 16 Polarization: 30.50 SS G_CDS: -0.66 Total: 29.83 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.30 -7.68 -39.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164008484.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.566 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds