Wall clock time and date at job start Tue Mar 31 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86804 * 119.99634 * 2 1 4 4 H 1.48500 * 109.46939 * 239.99953 * 3 2 1 5 5 H 1.48502 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47005 * 119.99714 * 3 2 1 7 7 C 1.40040 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.41149 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.33597 * 119.17078 * 179.97438 * 9 7 2 11 11 C 1.31664 * 120.79271 * 180.02562 * 10 9 7 12 12 C 1.40074 * 119.13583 * 359.97438 * 11 10 9 13 13 N 1.38808 * 120.75775 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99772 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.41097 * 34.30266 * 14 13 12 16 16 C 1.49579 * 109.36733 * 274.47164 * 14 13 12 17 17 C 1.30326 * 119.15792 * 258.55031 * 16 14 13 18 18 S 1.77804 * 107.56201 * 359.67604 * 17 16 14 19 19 O 1.42107 * 105.57130 * 230.89655 * 18 17 16 20 20 O 1.42105 * 105.60863 * 100.44371 * 18 17 16 21 21 C 1.54940 * 109.41107 * 154.16060 * 14 13 12 22 22 C 1.40086 * 118.48818 * 0.27447 * 12 11 10 23 23 N 1.31666 * 119.12927 * 359.46484 * 22 12 11 24 24 H 0.96993 * 120.00310 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.43212 * 180.02562 * 11 10 9 26 26 H 0.96991 * 119.99519 * 0.02562 * 13 12 11 27 27 H 1.07992 * 120.42334 * 78.53183 * 16 14 13 28 28 H 1.07994 * 126.22384 * 179.69005 * 17 16 14 29 29 H 1.09002 * 111.33313 * 212.61152 * 21 14 13 30 30 H 1.09004 * 111.33790 * 337.26157 * 21 14 13 31 31 H 1.08000 * 120.43833 * 179.72804 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.0949 1.6965 -1.2125 5 1 1.2761 2.7465 -0.0006 6 1 3.0949 1.6965 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3019 -2.4352 0.0005 10 7 1.9866 -3.5823 0.0005 11 6 1.3608 -4.7408 0.0000 12 6 -0.0398 -4.7594 0.0000 13 7 -0.7338 -5.9615 0.0001 14 6 -2.1988 -5.9615 0.0006 15 1 -2.5613 -5.1121 -0.5784 16 6 -2.6943 -5.8518 1.4077 17 6 -3.1177 -6.9231 2.0171 18 16 -2.9652 -8.2823 0.8810 19 8 -4.2337 -8.9229 0.8800 20 8 -1.7775 -8.9650 1.2588 21 6 -2.7139 -7.2766 -0.6364 22 6 -0.7242 -3.5371 -0.0053 23 7 -0.0339 -2.4159 0.0006 24 1 -0.4850 0.8400 -0.0004 25 1 1.9202 -5.6646 0.0005 26 1 -0.2487 -6.8014 0.0004 27 1 -2.7007 -4.8970 1.9123 28 1 -3.4933 -6.9758 3.0283 29 1 -3.6526 -7.1188 -1.1676 30 1 -1.9628 -7.7222 -1.2887 31 1 -1.8040 -3.5147 -0.0099 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164015397.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:41 Heat of formation + Delta-G solvation = 23.816328 kcal Electronic energy + Delta-G solvation = -19149.433092 eV Core-core repulsion = 15945.770886 eV Total energy + Delta-G solvation = -3203.662207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40216 -37.96053 -37.14386 -36.03571 -34.19872 -33.09346 -31.87577 -30.43928 -28.58240 -25.60652 -24.67274 -22.72952 -21.61326 -20.42054 -18.96348 -17.95716 -17.64210 -16.71166 -16.53147 -15.64832 -15.42776 -15.21859 -14.64248 -14.37883 -14.34286 -13.72543 -13.13294 -12.94406 -12.82511 -12.64067 -12.28329 -12.15450 -12.03956 -11.31629 -11.30717 -11.03168 -10.68872 -10.61043 -10.35705 -10.31240 -10.16027 -9.53377 -9.34769 -9.09209 -7.40795 -7.05830 -6.54336 -4.53624 -0.09898 1.23086 2.47253 2.59659 2.78021 3.05543 3.08664 3.12373 3.36731 3.71906 3.85284 3.90147 4.28834 4.35781 4.65024 4.85777 5.06836 5.28142 5.45547 5.59677 5.65484 5.78018 5.85768 5.98490 6.10759 6.25448 6.92289 6.96931 7.19114 7.81457 8.10633 8.21914 8.42005 8.60683 9.06196 10.09585 10.25648 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.047077 B = 0.003771 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.623945 B = 7422.348089 C = 7742.364561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.068 3.932 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.407 4.407 8 H 0.090 0.910 9 C 0.371 3.629 10 N -0.566 5.566 11 C 0.118 3.882 12 C -0.059 4.059 13 N -0.737 5.737 14 C 0.168 3.832 15 H 0.117 0.883 16 C -0.050 4.050 17 C -0.666 4.666 18 S 2.441 3.559 19 O -0.941 6.941 20 O -0.931 6.931 21 C -0.584 4.584 22 C 0.105 3.895 23 N -0.477 5.477 24 H 0.274 0.726 25 H 0.130 0.870 26 H 0.395 0.605 27 H 0.140 0.860 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -9.156 -0.861 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.158 4.158 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.444 4.444 8 H 0.108 0.892 9 C 0.131 3.869 10 N -0.285 5.285 11 C -0.057 4.057 12 C -0.163 4.163 13 N -0.375 5.375 14 C 0.059 3.941 15 H 0.135 0.865 16 C -0.073 4.073 17 C -0.775 4.775 18 S 2.622 3.378 19 O -0.938 6.938 20 O -0.928 6.928 21 C -0.714 4.714 22 C -0.072 4.072 23 N -0.194 5.194 24 H 0.085 0.915 25 H 0.147 0.853 26 H 0.230 0.770 27 H 0.158 0.842 28 H 0.197 0.803 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.382 -8.903 -0.714 11.587 hybrid contribution -0.060 0.568 0.164 0.595 sum -7.442 -8.334 -0.549 11.187 Atomic orbital electron populations 1.70114 1.07201 1.28044 1.29166 1.26030 0.94983 1.01198 0.93558 0.86233 0.79887 0.79751 0.80036 1.18843 1.20237 1.18845 1.19137 0.94636 0.87656 1.42942 0.89157 1.19821 0.85566 0.90766 0.90733 1.68603 1.40291 0.98050 1.21565 1.22242 0.88946 0.96527 0.97996 1.19109 0.93535 0.87039 1.16630 1.43543 1.00627 1.06004 1.87373 1.19978 0.84785 0.97944 0.91401 0.86496 1.23846 0.85843 1.01266 0.96315 1.32591 1.13057 1.16442 1.15413 1.07407 0.75153 0.76425 0.78827 1.93593 1.40914 1.73420 1.85900 1.93646 1.47716 1.71046 1.80351 1.30811 1.12124 1.10654 1.17856 1.22704 0.98897 0.87346 0.98210 1.69294 1.08443 1.25561 1.16098 0.91501 0.85275 0.76975 0.84176 0.80324 0.82777 0.82929 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.54 11.41 55.55 0.63 -17.90 16 2 C 0.07 1.69 5.50 -17.35 -0.10 1.60 16 3 Si 0.92 18.30 29.56 -169.99 -5.02 13.28 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.41 -10.97 9.35 -37.80 -0.35 -11.32 16 8 H 0.09 2.35 7.85 -52.48 -0.41 1.94 16 9 C 0.37 10.12 7.35 -158.23 -1.16 8.96 16 10 N -0.57 -14.44 10.34 -12.49 -0.13 -14.57 16 11 C 0.12 2.52 11.20 -16.94 -0.19 2.33 16 12 C -0.06 -1.16 6.69 -83.32 -0.56 -1.71 16 13 N -0.74 -10.63 5.15 -52.41 -0.27 -10.90 16 14 C 0.17 1.89 2.67 -68.60 -0.18 1.71 16 15 H 0.12 1.28 6.47 -51.93 -0.34 0.94 16 16 C -0.05 -0.57 9.66 -36.37 -0.35 -0.92 16 17 C -0.67 -7.17 11.05 29.20 0.32 -6.85 16 18 S 2.44 25.36 6.19 -107.50 -0.66 24.69 16 19 O -0.94 -12.30 18.02 -57.38 -1.03 -13.33 16 20 O -0.93 -12.77 18.02 -57.38 -1.03 -13.80 16 21 C -0.58 -4.55 7.32 38.18 0.28 -4.27 16 22 C 0.11 2.27 10.44 -16.93 -0.18 2.10 16 23 N -0.48 -12.48 7.84 -12.49 -0.10 -12.58 16 24 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 25 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 26 H 0.40 5.11 8.60 -40.82 -0.35 4.76 16 27 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.15 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.15 0.97 8.01 -51.93 -0.42 0.56 16 31 H 0.13 2.29 6.35 -52.49 -0.33 1.95 16 LS Contribution 286.95 15.07 4.32 4.32 Total: -1.00 -34.36 286.95 -8.44 -42.80 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.67 Total: 6.38 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.47 Total: -8.39 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.14 Total: -55.95 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -2.07 Total: -27.13 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.28 kcal Atomic # 16 Polarization: 25.36 SS G_CDS: -0.66 Total: 24.69 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.36 -8.44 -42.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164015397.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.618 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds