Wall clock time and date at job start Tue Mar 31 2020 05:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46787 * 2 1 4 4 C 1.46901 * 110.99813 * 199.52892 * 3 2 1 5 5 C 1.50700 * 109.46951 * 66.04278 * 4 3 2 6 6 H 1.07994 * 120.00326 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00274 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47276 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46828 * 120.00518 * 9 7 5 12 12 H 1.48504 * 109.47386 * 240.00158 * 9 7 5 13 13 C 1.38577 * 110.99987 * 75.57533 * 3 2 1 14 14 N 1.32976 * 120.67142 * 59.05327 * 13 3 2 15 15 C 1.32164 * 121.35330 * 179.97438 * 14 13 3 16 16 Cl 1.73605 * 118.89861 * 180.02562 * 15 14 13 17 17 N 1.31718 * 122.20702 * 0.02562 * 15 14 13 18 18 C 1.33333 * 120.38213 * 359.95613 * 17 15 14 19 19 C 1.46283 * 135.17671 * 180.02562 * 18 17 15 20 20 C 1.34333 * 106.23814 * 179.97438 * 19 18 17 21 21 O 1.34298 * 110.04917 * 359.97438 * 20 19 18 22 22 C 1.34581 * 110.79416 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47148 * 64.87315 * 1 2 3 24 24 H 1.09000 * 109.47196 * 184.87214 * 1 2 3 25 25 H 1.08995 * 109.47424 * 304.87354 * 1 2 3 26 26 H 1.08997 * 109.46928 * 240.00042 * 2 1 3 27 27 H 1.08995 * 109.47091 * 120.00008 * 2 1 3 28 28 H 1.08997 * 109.47500 * 186.04466 * 4 3 2 29 29 H 1.09001 * 109.47390 * 306.04597 * 4 3 2 30 30 H 0.96992 * 119.99767 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.88476 * 0.25713 * 19 18 17 32 32 H 1.08003 * 124.97735 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4137 1.4506 -0.4585 5 6 3.4854 1.0449 -1.9081 6 1 2.5853 0.7666 -2.4361 7 6 4.6999 1.0299 -2.5605 8 7 5.7960 1.3693 -1.9177 9 14 4.7887 0.5277 -4.3575 10 1 3.4265 0.1955 -4.8466 11 1 5.3417 1.6496 -5.1582 12 1 5.6686 -0.6604 -4.4966 13 6 1.8813 1.9607 1.2529 14 7 2.4767 1.4256 2.3147 15 6 2.3543 1.9636 3.5157 16 17 3.1599 1.2125 4.8576 17 7 1.6416 3.0507 3.7287 18 6 1.0113 3.6523 2.7194 19 6 0.1602 4.8344 2.5849 20 6 -0.1678 4.9151 1.2847 21 8 0.3951 3.9033 0.6042 22 6 1.1143 3.1166 1.4259 23 1 -0.3633 0.4364 -0.9304 24 1 -0.3633 -1.0239 0.0873 25 1 -0.3634 0.5875 0.8431 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7853 2.4693 -0.3475 29 1 4.0249 0.7739 0.1388 30 1 6.6504 1.3584 -2.3766 31 1 -0.1402 5.5099 3.3722 32 1 -0.7926 5.6814 0.8502 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166593470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:49 Heat of formation + Delta-G solvation = 63.745149 kcal Electronic energy + Delta-G solvation = -19687.387498 eV Core-core repulsion = 16483.413029 eV Total energy + Delta-G solvation = -3203.974469 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.80557 -39.93383 -37.43862 -36.56382 -33.51268 -32.67262 -31.54118 -30.65155 -29.81547 -26.81200 -24.17176 -23.90406 -22.63061 -21.73766 -20.50773 -18.77034 -17.90870 -16.81751 -16.56067 -16.09415 -15.46459 -15.09080 -14.47539 -14.45748 -13.98199 -13.58968 -13.14013 -12.96920 -12.56750 -12.29623 -11.62652 -11.56313 -11.53368 -11.36477 -11.24227 -11.07873 -10.79532 -10.61237 -10.43920 -10.07674 -9.51655 -9.20230 -9.11952 -8.76506 -8.58829 -7.91862 -6.12763 -4.16147 0.61122 0.93174 1.46559 2.17115 2.65353 3.26610 3.34054 3.38253 3.65253 3.76594 3.95046 4.30955 4.39847 4.82114 4.94825 5.11552 5.23408 5.47202 5.60999 5.73611 5.82224 5.96006 5.99833 6.24173 6.49943 6.62614 6.73171 6.91431 7.03692 7.18555 7.60911 7.70155 7.92865 7.95718 8.28109 8.89537 9.47953 10.98055 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.005837 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.144380 B = 4795.606181 C = 5500.240837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.485 5.485 4 C 0.201 3.799 5 C -0.514 4.514 6 H 0.069 0.931 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.902 3.098 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.426 3.574 14 N -0.511 5.511 15 C 0.365 3.635 16 Cl 0.020 6.980 17 N -0.488 5.488 18 C 0.123 3.877 19 C -0.211 4.211 20 C 0.046 3.954 21 O -0.155 6.155 22 C -0.030 4.030 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.046 0.954 28 H 0.029 0.971 29 H 0.016 0.984 30 H 0.263 0.737 31 H 0.170 0.830 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 4.101 8.491 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 N -0.210 5.210 4 C 0.078 3.922 5 C -0.553 4.553 6 H 0.087 0.913 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.730 3.270 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.183 3.817 14 N -0.234 5.234 15 C 0.069 3.931 16 Cl 0.048 6.952 17 N -0.207 5.207 18 C -0.013 4.013 19 C -0.231 4.231 20 C -0.024 4.024 21 O -0.051 6.051 22 C -0.085 4.085 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.188 0.812 32 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.179 3.875 8.739 14.709 hybrid contribution 0.430 -0.148 -0.664 0.805 sum -10.750 3.726 8.075 13.952 Atomic orbital electron populations 1.21798 0.96132 1.00667 1.01648 1.22170 0.94361 0.87378 1.03223 1.60617 1.27342 1.19814 1.13218 1.19902 0.78209 0.97783 0.96270 1.21079 0.93754 1.45792 0.94636 0.91276 1.24988 0.95429 0.95251 0.98697 1.69979 0.98569 1.47842 1.36762 0.86369 0.78225 0.78153 0.84260 1.19495 1.20933 1.20938 1.19515 0.85467 0.86979 0.89787 1.68425 1.22521 1.34047 0.98431 1.22598 0.93442 0.89241 0.87863 1.98411 1.76313 1.79593 1.40880 1.67177 1.09946 1.08927 1.34652 1.20769 0.96866 0.95972 0.87729 1.22183 1.04233 0.98974 0.97747 1.24467 0.96486 0.90637 0.90840 1.84136 1.52495 1.32461 1.35965 1.20956 1.00416 0.96785 0.90308 0.91818 0.92520 0.94444 0.87988 0.93592 0.95257 0.96608 0.92705 0.81204 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.07 37.16 0.37 -1.94 16 2 C 0.06 1.07 5.50 -3.82 -0.02 1.05 16 3 N -0.49 -10.69 4.43 -174.32 -0.77 -11.46 16 4 C 0.20 5.24 4.55 -4.98 -0.02 5.22 16 5 C -0.51 -13.99 8.23 -34.44 -0.28 -14.27 16 6 H 0.07 1.83 7.31 -52.49 -0.38 1.45 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 9 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.43 8.81 4.58 -154.69 -0.71 8.10 16 14 N -0.51 -10.49 9.55 -10.80 -0.10 -10.59 16 15 C 0.36 6.79 8.17 -91.90 -0.75 6.04 16 16 Cl 0.02 0.32 29.26 -51.86 -1.52 -1.20 16 17 N -0.49 -8.76 10.46 -8.55 -0.09 -8.85 16 18 C 0.12 2.07 7.59 -83.17 -0.63 1.44 16 19 C -0.21 -2.50 11.13 -37.73 -0.42 -2.92 16 20 C 0.05 0.48 11.97 29.35 0.35 0.83 16 21 O -0.16 -2.47 10.57 4.96 0.05 -2.42 16 22 C -0.03 -0.54 7.41 -38.19 -0.28 -0.83 16 23 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.60 7.60 -51.93 -0.39 0.21 16 26 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 27 H 0.05 0.90 7.45 -51.93 -0.39 0.51 16 28 H 0.03 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.22 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -31.44 298.90 -7.87 -39.31 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -3.17 Total: -4.19 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.49 Total: 4.26 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.23 Total: -56.30 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.05 Total: -2.42 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.44 -7.87 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.059 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds