Wall clock time and date at job start Tue Mar 31 2020 05:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46787 * 2 1 4 4 C 1.46901 * 110.99813 * 199.52892 * 3 2 1 5 5 C 1.50700 * 109.46951 * 66.04278 * 4 3 2 6 6 H 1.07994 * 120.00326 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99997 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00274 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47276 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.46828 * 120.00518 * 9 7 5 12 12 H 1.48504 * 109.47386 * 240.00158 * 9 7 5 13 13 C 1.38577 * 110.99987 * 75.57533 * 3 2 1 14 14 N 1.32976 * 120.67142 * 59.05327 * 13 3 2 15 15 C 1.32164 * 121.35330 * 179.97438 * 14 13 3 16 16 Cl 1.73605 * 118.89861 * 180.02562 * 15 14 13 17 17 N 1.31718 * 122.20702 * 0.02562 * 15 14 13 18 18 C 1.33333 * 120.38213 * 359.95613 * 17 15 14 19 19 C 1.46283 * 135.17671 * 180.02562 * 18 17 15 20 20 C 1.34333 * 106.23814 * 179.97438 * 19 18 17 21 21 O 1.34298 * 110.04917 * 359.97438 * 20 19 18 22 22 C 1.34581 * 110.79416 * 0.02562 * 21 20 19 23 23 H 1.09000 * 109.47148 * 64.87315 * 1 2 3 24 24 H 1.09000 * 109.47196 * 184.87214 * 1 2 3 25 25 H 1.08995 * 109.47424 * 304.87354 * 1 2 3 26 26 H 1.08997 * 109.46928 * 240.00042 * 2 1 3 27 27 H 1.08995 * 109.47091 * 120.00008 * 2 1 3 28 28 H 1.08997 * 109.47500 * 186.04466 * 4 3 2 29 29 H 1.09001 * 109.47390 * 306.04597 * 4 3 2 30 30 H 0.96992 * 119.99767 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.88476 * 0.25713 * 19 18 17 32 32 H 1.08003 * 124.97735 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4137 1.4506 -0.4585 5 6 3.4854 1.0449 -1.9081 6 1 2.5853 0.7666 -2.4361 7 6 4.6999 1.0299 -2.5605 8 7 5.7960 1.3693 -1.9177 9 14 4.7887 0.5277 -4.3575 10 1 3.4265 0.1955 -4.8466 11 1 5.3417 1.6496 -5.1582 12 1 5.6686 -0.6604 -4.4966 13 6 1.8813 1.9607 1.2529 14 7 2.4767 1.4256 2.3147 15 6 2.3543 1.9636 3.5157 16 17 3.1599 1.2125 4.8576 17 7 1.6416 3.0507 3.7287 18 6 1.0113 3.6523 2.7194 19 6 0.1602 4.8344 2.5849 20 6 -0.1678 4.9151 1.2847 21 8 0.3951 3.9033 0.6042 22 6 1.1143 3.1166 1.4259 23 1 -0.3633 0.4364 -0.9304 24 1 -0.3633 -1.0239 0.0873 25 1 -0.3634 0.5875 0.8431 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.7853 2.4693 -0.3475 29 1 4.0249 0.7739 0.1388 30 1 6.6504 1.3584 -2.3766 31 1 -0.1402 5.5099 3.3722 32 1 -0.7926 5.6814 0.8502 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166593470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:48 Heat of formation + Delta-G solvation = 42.564166 kcal Electronic energy + Delta-G solvation = -19688.305975 eV Core-core repulsion = 16483.413029 eV Total energy + Delta-G solvation = -3204.892946 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.02541 -41.31371 -39.00778 -37.92017 -35.15875 -34.47085 -32.76769 -32.00112 -31.39190 -28.68618 -25.61353 -25.28095 -24.47531 -23.03090 -21.92407 -20.06225 -19.20563 -18.66337 -17.92156 -17.70453 -16.90554 -16.66839 -16.04991 -15.86088 -15.59051 -14.96118 -14.41011 -14.38632 -14.16997 -13.97301 -13.01067 -12.97814 -12.92089 -12.89310 -12.84259 -12.65925 -12.59565 -12.29761 -11.97658 -11.93251 -11.47133 -10.71289 -10.68957 -10.25608 -10.05955 -9.71822 -8.25675 -6.37841 -0.73143 -0.43444 0.11486 1.15165 1.43255 1.43506 1.51697 1.57899 2.24380 2.32653 2.46116 2.68794 3.00558 3.08842 3.56280 3.66195 4.03675 4.17059 4.32677 4.50490 4.59919 4.69123 4.81109 4.89749 4.99965 5.10110 5.11122 5.27148 5.45519 5.55544 5.74038 5.87641 5.91073 6.34406 6.52118 6.75276 7.31834 8.86568 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.005837 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.144380 B = 4795.606181 C = 5500.240837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 N -0.486 5.486 4 C 0.224 3.776 5 C -0.525 4.525 6 H 0.075 0.925 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.978 3.022 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.396 3.604 14 N -0.539 5.539 15 C 0.350 3.650 16 Cl 0.039 6.961 17 N -0.489 5.489 18 C 0.115 3.885 19 C -0.212 4.212 20 C 0.076 3.924 21 O -0.174 6.174 22 C -0.048 4.048 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.036 0.964 28 H -0.007 1.007 29 H -0.020 1.020 30 H 0.266 0.734 31 H 0.208 0.792 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.972 5.385 7.855 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 N -0.210 5.210 4 C 0.099 3.901 5 C -0.563 4.563 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.801 3.199 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.154 3.846 14 N -0.262 5.262 15 C 0.054 3.946 16 Cl 0.067 6.933 17 N -0.208 5.208 18 C -0.022 4.022 19 C -0.232 4.232 20 C 0.008 3.992 21 O -0.070 6.070 22 C -0.102 4.102 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.011 0.989 29 H -0.002 1.002 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -13.588 5.146 8.124 16.646 hybrid contribution 1.090 -0.423 -0.355 1.222 sum -12.498 4.724 7.768 15.455 Atomic orbital electron populations 1.21679 0.92952 1.02454 1.01623 1.22215 0.96880 0.86110 1.02001 1.60524 1.24421 1.21130 1.14919 1.19377 0.80433 0.94463 0.95779 1.21370 0.94178 1.45643 0.95120 0.90671 1.25984 0.94863 0.94940 1.03687 1.70123 0.99294 1.48990 1.38941 0.85207 0.78816 0.77784 0.78051 1.18031 1.20458 1.20394 1.19496 0.87404 0.88454 0.89259 1.68268 1.23556 1.35151 0.99235 1.22844 0.94008 0.89765 0.87951 1.98402 1.75972 1.79384 1.39540 1.67297 1.09948 1.08641 1.34936 1.21610 0.96724 0.97144 0.86743 1.22704 1.03380 0.97716 0.99406 1.25763 0.94175 0.89023 0.90285 1.84144 1.52608 1.33511 1.36768 1.20846 1.01117 0.96693 0.91594 0.91477 0.89707 0.94734 0.89379 0.94548 0.98915 1.00174 0.92488 0.77467 0.70138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 10.07 71.98 0.72 -3.32 16 2 C 0.05 2.18 5.50 86.30 0.47 2.65 16 3 N -0.49 -22.33 4.43 -705.42 -3.12 -25.45 16 4 C 0.22 12.38 4.55 85.56 0.39 12.77 16 5 C -0.53 -29.43 8.23 25.60 0.21 -29.22 16 6 H 0.08 4.03 7.31 -2.91 -0.02 4.01 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 9 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.40 17.01 4.58 133.20 0.61 17.62 16 14 N -0.54 -23.20 9.55 -188.09 -1.80 -25.00 16 15 C 0.35 13.38 8.17 180.80 1.48 14.86 16 16 Cl 0.04 1.25 29.26 -2.72 -0.08 1.17 16 17 N -0.49 -17.46 10.46 -180.96 -1.89 -19.35 16 18 C 0.12 3.74 7.59 41.53 0.32 4.05 16 19 C -0.21 -4.24 11.13 23.47 0.26 -3.97 16 20 C 0.08 1.28 11.97 66.93 0.80 2.08 16 21 O -0.17 -5.23 10.57 -5.17 -0.05 -5.28 16 22 C -0.05 -1.75 7.41 23.17 0.17 -1.58 16 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.03 1.09 7.60 -2.39 -0.02 1.07 16 26 H 0.09 3.72 6.58 -2.39 -0.02 3.70 16 27 H 0.04 1.50 7.45 -2.39 -0.02 1.48 16 28 H -0.01 -0.45 8.05 -2.39 -0.02 -0.46 16 29 H -0.02 -1.19 8.12 -2.39 -0.02 -1.21 16 30 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.21 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.28 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -72.92 298.90 2.42 -70.50 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: 1.15 Total: -2.49 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.90 Total: 16.63 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -6.53 Total: -125.97 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.05 Total: -5.28 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -0.08 Total: 1.17 kcal Total: -72.92 2.42 -70.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166593470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.069 kcal (2) G-P(sol) polarization free energy of solvation -72.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds