Wall clock time and date at job start Tue Mar 31 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36735 * 120.00353 * 2 1 4 4 H 1.07993 * 119.99928 * 203.15145 * 3 2 1 5 5 C 1.38770 * 119.99663 * 23.15095 * 3 2 1 6 6 N 1.31602 * 120.00328 * 12.91241 * 5 3 2 7 7 Si 1.86803 * 119.99749 * 192.90995 * 5 3 2 8 8 H 1.48503 * 109.47158 * 59.99960 * 7 5 3 9 9 H 1.48502 * 109.47257 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47163 * 299.99986 * 7 5 3 11 11 C 1.39018 * 119.99579 * 179.97438 * 2 1 3 12 12 C 1.38493 * 120.35840 * 90.00290 * 11 2 1 13 13 F 1.35107 * 119.61801 * 359.95501 * 12 11 2 14 14 C 1.39206 * 120.76480 * 179.97438 * 12 11 2 15 15 C 1.36370 * 121.03688 * 359.97438 * 14 12 11 16 16 C 1.40226 * 119.85813 * 0.02562 * 15 14 12 17 17 C 1.40814 * 122.01370 * 179.97438 * 16 15 14 18 18 Cl 1.73605 * 120.83389 * 359.75469 * 17 16 15 19 19 N 1.31956 * 118.33430 * 180.02562 * 17 16 15 20 20 C 1.32475 * 121.59423 * 359.97438 * 19 17 16 21 21 N 1.31199 * 122.82895 * 0.02562 * 20 19 17 22 22 C 1.33771 * 120.30801 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47347 * 275.11969 * 1 2 3 24 24 H 1.09007 * 109.46501 * 35.11983 * 1 2 3 25 25 H 1.08997 * 109.47153 * 155.11353 * 1 2 3 26 26 H 0.97003 * 120.00043 * 180.02562 * 6 5 3 27 27 H 1.08005 * 119.48438 * 179.97438 * 14 12 11 28 28 H 1.08005 * 120.06891 * 180.02562 * 15 14 12 29 29 H 1.07995 * 118.58157 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1841 0.0000 4 1 3.1635 1.2217 -0.3677 5 6 1.5387 2.3375 0.4725 6 7 0.4128 2.2566 1.1491 7 14 2.3158 4.0050 0.1482 8 1 2.4176 4.2273 -1.3166 9 1 1.4745 5.0691 0.7525 10 1 3.6726 4.0444 0.7503 11 6 2.1600 -1.2040 0.0005 12 6 2.5100 -1.8107 -1.1942 13 9 2.1713 -1.2262 -2.3643 14 6 3.2064 -3.0160 -1.2036 15 6 3.5629 -3.6311 -0.0398 16 6 3.2262 -3.0474 1.1899 17 6 3.5710 -3.6432 2.4183 18 17 4.4337 -5.1490 2.4658 19 7 3.2172 -3.0310 3.5325 20 6 2.5546 -1.8841 3.5138 21 7 2.2062 -1.2819 2.4015 22 6 2.5170 -1.8197 1.2167 23 1 -0.3634 0.0917 1.0235 24 1 -0.3632 0.8407 -0.5913 25 1 -0.3633 -0.9322 -0.4324 26 1 -0.0137 3.0629 1.4790 27 1 3.4685 -3.4712 -2.1473 28 1 4.1034 -4.5658 -0.0653 29 1 2.2890 -1.4254 4.4548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801946.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:11 Heat of formation + Delta-G solvation = 50.368886 kcal Electronic energy + Delta-G solvation = -19500.281051 eV Core-core repulsion = 16172.266238 eV Total energy + Delta-G solvation = -3328.014813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.043 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.10793 -40.76725 -37.37432 -36.68569 -35.66516 -33.20624 -31.76811 -30.42174 -28.74753 -26.32810 -24.66945 -23.75188 -23.43368 -20.82258 -18.64363 -17.98172 -17.37726 -16.65385 -15.63703 -15.51748 -15.10361 -14.94821 -14.46873 -14.03482 -13.71292 -13.46252 -13.06686 -13.03418 -12.18027 -12.11490 -11.73842 -11.41556 -11.40595 -11.21221 -11.11843 -10.83065 -10.49033 -10.41269 -10.23219 -10.13381 -9.03315 -8.83086 -8.56779 -7.72848 -7.30043 -6.29274 -3.50827 0.40993 1.05490 1.80326 2.13533 3.15737 3.20233 3.20941 3.25883 4.07167 4.41606 4.44492 4.51572 4.85031 4.93601 4.97758 5.01684 5.24383 5.42319 5.87552 6.02475 6.21423 6.36823 6.50042 6.52292 6.69854 7.03995 7.16119 7.29395 7.36039 7.47208 7.92714 8.54207 8.65007 9.33708 9.73126 10.69195 Molecular weight = 281.04amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.006326 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.890048 B = 4425.180381 C = 5146.810491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.153 3.847 2 N -0.510 5.510 3 C -0.222 4.222 4 H 0.082 0.918 5 C 0.011 3.989 6 N -0.853 5.853 7 Si 0.923 3.077 8 H -0.274 1.274 9 H -0.283 1.283 10 H -0.275 1.275 11 C 0.164 3.836 12 C 0.065 3.935 13 F -0.132 7.132 14 C -0.111 4.111 15 C -0.123 4.123 16 C -0.131 4.131 17 C 0.228 3.772 18 Cl -0.029 7.029 19 N -0.523 5.523 20 C 0.278 3.722 21 N -0.454 5.454 22 C 0.175 3.825 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.009 0.991 26 H 0.267 0.733 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 -9.608 -0.911 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.217 5.217 3 C -0.349 4.349 4 H 0.100 0.900 5 C -0.194 4.194 6 N -0.489 5.489 7 Si 0.750 3.250 8 H -0.200 1.200 9 H -0.208 1.208 10 H -0.200 1.200 11 C 0.060 3.940 12 C 0.038 3.962 13 F -0.111 7.111 14 C -0.131 4.131 15 C -0.145 4.145 16 C -0.137 4.137 17 C 0.043 3.957 18 Cl -0.001 7.001 19 N -0.240 5.240 20 C -0.010 4.010 21 N -0.168 5.168 22 C 0.041 3.959 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.151 0.849 28 H 0.152 0.848 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.506 -8.799 0.000 9.472 hybrid contribution 0.669 0.386 -0.744 1.073 sum 4.176 -8.413 -0.744 9.422 Atomic orbital electron populations 1.21139 0.80291 0.96723 1.00871 1.41378 1.02939 0.98930 1.78410 1.19615 0.99857 0.83123 1.32343 0.90037 1.25393 0.97607 0.99901 0.96489 1.70089 1.17304 1.29211 1.32273 0.86034 0.78927 0.81391 0.78680 1.20007 1.20788 1.20045 1.17114 0.99810 0.88606 0.88497 1.18178 1.01476 0.95006 0.81560 1.91448 1.90478 1.83991 1.45146 1.20700 0.99066 0.93968 0.99327 1.20355 1.03412 1.00853 0.89923 1.19117 1.03066 0.97499 0.94066 1.22010 0.94714 0.89552 0.89453 1.98373 1.74349 1.28836 1.98515 1.67502 1.14268 1.11403 1.30860 1.24725 0.91939 0.87027 0.97332 1.68756 1.18328 1.32116 0.97555 1.19718 0.93202 0.89416 0.93533 0.92960 0.93034 0.97277 0.92255 0.84929 0.84755 0.78849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.64 8.96 59.85 0.54 4.18 15 2 N -0.51 -12.62 2.55 -120.24 -0.31 -12.92 15 3 C -0.22 -5.79 9.62 -15.17 -0.15 -5.93 15 4 H 0.08 2.11 7.86 -52.49 -0.41 1.70 15 5 C 0.01 0.28 5.10 -17.45 -0.09 0.20 15 6 N -0.85 -22.48 10.70 55.49 0.59 -21.88 15 7 Si 0.92 20.07 29.57 -169.99 -5.03 15.05 15 8 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 11 C 0.16 3.68 5.05 -83.50 -0.42 3.26 15 12 C 0.06 1.27 7.30 -39.13 -0.29 0.99 15 13 F -0.13 -2.69 17.05 2.25 0.04 -2.65 15 14 C -0.11 -1.73 9.91 -39.90 -0.40 -2.13 15 15 C -0.12 -1.88 9.47 -39.51 -0.37 -2.26 15 16 C -0.13 -2.38 5.74 -106.81 -0.61 -3.00 15 17 C 0.23 3.91 7.41 -16.52 -0.12 3.79 15 18 Cl -0.03 -0.40 27.87 -51.86 -1.45 -1.84 15 19 N -0.52 -9.39 10.39 -11.25 -0.12 -9.51 15 20 C 0.28 5.16 12.23 -92.07 -1.13 4.03 15 21 N -0.45 -9.99 10.23 -12.46 -0.13 -10.11 15 22 C 0.17 3.74 6.63 -84.65 -0.56 3.18 15 23 H 0.05 1.34 7.33 -51.93 -0.38 0.95 15 24 H 0.05 1.26 7.34 -51.93 -0.38 0.88 15 25 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 15 26 H 0.27 6.72 8.31 -40.82 -0.34 6.39 15 27 H 0.13 1.63 8.06 -52.48 -0.42 1.20 15 28 H 0.13 1.66 7.11 -52.48 -0.37 1.29 15 29 H 0.20 2.96 8.06 -52.49 -0.42 2.54 15 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -27.71 279.21 -7.73 -35.44 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -1.94 Total: -2.07 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -3.60 Total: 6.30 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.04 Total: -54.43 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.45 Total: -1.84 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.71 -7.73 -35.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801946.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.807 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds