Wall clock time and date at job start Tue Mar 31 2020 05:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36735 * 120.00353 * 2 1 4 4 H 1.07993 * 119.99928 * 203.15145 * 3 2 1 5 5 C 1.38770 * 119.99663 * 23.15095 * 3 2 1 6 6 N 1.31602 * 120.00328 * 12.91241 * 5 3 2 7 7 Si 1.86803 * 119.99749 * 192.90995 * 5 3 2 8 8 H 1.48503 * 109.47158 * 59.99960 * 7 5 3 9 9 H 1.48502 * 109.47257 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47163 * 299.99986 * 7 5 3 11 11 C 1.39018 * 119.99579 * 179.97438 * 2 1 3 12 12 C 1.38493 * 120.35840 * 90.00290 * 11 2 1 13 13 F 1.35107 * 119.61801 * 359.95501 * 12 11 2 14 14 C 1.39206 * 120.76480 * 179.97438 * 12 11 2 15 15 C 1.36370 * 121.03688 * 359.97438 * 14 12 11 16 16 C 1.40226 * 119.85813 * 0.02562 * 15 14 12 17 17 C 1.40814 * 122.01370 * 179.97438 * 16 15 14 18 18 Cl 1.73605 * 120.83389 * 359.75469 * 17 16 15 19 19 N 1.31956 * 118.33430 * 180.02562 * 17 16 15 20 20 C 1.32475 * 121.59423 * 359.97438 * 19 17 16 21 21 N 1.31199 * 122.82895 * 0.02562 * 20 19 17 22 22 C 1.33771 * 120.30801 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.47347 * 275.11969 * 1 2 3 24 24 H 1.09007 * 109.46501 * 35.11983 * 1 2 3 25 25 H 1.08997 * 109.47153 * 155.11353 * 1 2 3 26 26 H 0.97003 * 120.00043 * 180.02562 * 6 5 3 27 27 H 1.08005 * 119.48438 * 179.97438 * 14 12 11 28 28 H 1.08005 * 120.06891 * 180.02562 * 15 14 12 29 29 H 1.07995 * 118.58157 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1841 0.0000 4 1 3.1635 1.2217 -0.3677 5 6 1.5387 2.3375 0.4725 6 7 0.4128 2.2566 1.1491 7 14 2.3158 4.0050 0.1482 8 1 2.4176 4.2273 -1.3166 9 1 1.4745 5.0691 0.7525 10 1 3.6726 4.0444 0.7503 11 6 2.1600 -1.2040 0.0005 12 6 2.5100 -1.8107 -1.1942 13 9 2.1713 -1.2262 -2.3643 14 6 3.2064 -3.0160 -1.2036 15 6 3.5629 -3.6311 -0.0398 16 6 3.2262 -3.0474 1.1899 17 6 3.5710 -3.6432 2.4183 18 17 4.4337 -5.1490 2.4658 19 7 3.2172 -3.0310 3.5325 20 6 2.5546 -1.8841 3.5138 21 7 2.2062 -1.2819 2.4015 22 6 2.5170 -1.8197 1.2167 23 1 -0.3634 0.0917 1.0235 24 1 -0.3632 0.8407 -0.5913 25 1 -0.3633 -0.9322 -0.4324 26 1 -0.0137 3.0629 1.4790 27 1 3.4685 -3.4712 -2.1473 28 1 4.1034 -4.5658 -0.0653 29 1 2.2890 -1.4254 4.4548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801946.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:10 Heat of formation + Delta-G solvation = 33.950176 kcal Electronic energy + Delta-G solvation = -19500.993020 eV Core-core repulsion = 16172.266238 eV Total energy + Delta-G solvation = -3328.726781 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.043 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.83850 -42.35395 -38.96985 -38.08149 -37.22396 -34.78286 -33.37595 -31.98214 -30.39231 -28.05471 -26.22839 -25.37066 -25.05654 -22.41184 -20.19391 -19.56971 -18.97978 -18.27359 -17.26464 -17.14984 -16.75162 -16.52646 -16.07037 -15.66421 -15.22361 -15.11923 -14.69165 -14.45023 -13.85514 -13.56973 -13.35129 -13.05650 -12.86228 -12.81167 -12.69164 -12.55421 -12.22755 -12.07564 -11.73013 -11.60933 -10.75846 -10.38458 -10.08243 -9.27286 -9.04111 -7.91665 -5.46121 -0.99328 -0.52706 0.35162 0.63525 1.43008 1.45527 1.52208 1.73702 2.42353 2.82886 2.87743 2.99208 3.24344 3.33130 3.37572 3.44681 3.76192 4.02367 4.26288 4.45301 4.67952 4.74787 4.88914 4.96989 5.11299 5.22342 5.49374 5.58186 5.60884 5.79158 6.26582 6.97882 7.04217 7.73974 8.12621 9.11100 Molecular weight = 281.04amu Principal moments of inertia in cm(-1) A = 0.021602 B = 0.006326 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.890048 B = 4425.180381 C = 5146.810491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.553 5.553 3 C -0.271 4.271 4 H 0.060 0.940 5 C -0.030 4.030 6 N -0.918 5.918 7 Si 0.971 3.029 8 H -0.275 1.275 9 H -0.287 1.287 10 H -0.279 1.279 11 C 0.148 3.852 12 C 0.098 3.902 13 F -0.134 7.134 14 C -0.117 4.117 15 C -0.054 4.054 16 C -0.161 4.161 17 C 0.260 3.740 18 Cl 0.022 6.978 19 N -0.528 5.528 20 C 0.298 3.702 21 N -0.496 5.496 22 C 0.149 3.851 23 H 0.016 0.984 24 H 0.029 0.971 25 H 0.019 0.981 26 H 0.253 0.747 27 H 0.187 0.813 28 H 0.185 0.815 29 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -15.306 -1.282 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.270 5.270 3 C -0.400 4.400 4 H 0.078 0.922 5 C -0.228 4.228 6 N -0.561 5.561 7 Si 0.798 3.202 8 H -0.201 1.201 9 H -0.213 1.213 10 H -0.204 1.204 11 C 0.050 3.950 12 C 0.073 3.927 13 F -0.112 7.112 14 C -0.135 4.135 15 C -0.075 4.075 16 C -0.167 4.167 17 C 0.072 3.928 18 Cl 0.051 6.949 19 N -0.245 5.245 20 C 0.010 3.990 21 N -0.209 5.209 22 C 0.018 3.982 23 H 0.035 0.965 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.204 0.796 28 H 0.203 0.797 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.614 -14.623 -0.418 16.055 hybrid contribution 0.192 1.016 -0.591 1.191 sum 6.806 -13.607 -1.009 15.248 Atomic orbital electron populations 1.20589 0.80902 0.95910 0.98430 1.41059 1.02216 0.99161 1.84559 1.19122 0.98771 0.85356 1.36703 0.92183 1.25761 0.98288 1.01697 0.97019 1.70225 1.20027 1.28057 1.37786 0.85319 0.77682 0.79171 0.78055 1.20092 1.21257 1.20437 1.17753 0.97664 0.89679 0.89866 1.18941 0.98867 0.94180 0.80748 1.91470 1.90257 1.84287 1.45197 1.21217 0.97940 0.92349 1.02016 1.21102 0.97656 1.00482 0.88210 1.19352 1.04219 0.97149 0.95984 1.22511 0.91476 0.89918 0.88909 1.98414 1.72635 1.25477 1.98409 1.67767 1.14488 1.11347 1.30933 1.25397 0.89557 0.86476 0.97565 1.68794 1.19937 1.33390 0.98767 1.19908 0.94168 0.90826 0.93310 0.96531 0.95211 0.96196 0.93800 0.79563 0.79736 0.76167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.63 8.96 127.77 1.15 10.78 15 2 N -0.55 -29.16 2.55 -534.32 -1.36 -30.52 15 3 C -0.27 -15.43 9.62 84.06 0.81 -14.62 15 4 H 0.06 3.42 7.86 -2.91 -0.02 3.39 15 5 C -0.03 -1.71 5.10 84.85 0.43 -1.27 15 6 N -0.92 -54.18 10.70 21.64 0.23 -53.95 15 7 Si 0.97 45.53 29.57 68.60 2.03 47.56 15 8 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 9 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 11 C 0.15 6.62 5.05 38.72 0.20 6.82 15 12 C 0.10 3.56 7.30 22.56 0.16 3.73 15 13 F -0.13 -5.21 17.05 44.97 0.77 -4.44 15 14 C -0.12 -2.86 9.91 22.07 0.22 -2.64 15 15 C -0.05 -1.25 9.47 22.32 0.21 -1.04 15 16 C -0.16 -5.04 5.74 -21.28 -0.12 -5.16 15 17 C 0.26 7.46 7.41 85.30 0.63 8.09 15 18 Cl 0.02 0.45 27.87 -2.72 -0.08 0.37 15 19 N -0.53 -16.81 10.39 -189.51 -1.97 -18.78 15 20 C 0.30 10.49 12.23 180.86 2.21 12.70 15 21 N -0.50 -21.82 10.23 -193.32 -1.98 -23.80 15 22 C 0.15 6.15 6.63 40.39 0.27 6.41 15 23 H 0.02 0.93 7.33 -2.39 -0.02 0.91 15 24 H 0.03 1.61 7.34 -2.38 -0.02 1.60 15 25 H 0.02 0.90 8.01 -2.39 -0.02 0.89 15 26 H 0.25 14.42 8.31 -92.71 -0.77 13.65 15 27 H 0.19 2.87 8.06 -2.91 -0.02 2.85 15 28 H 0.19 2.63 7.11 -2.91 -0.02 2.61 15 29 H 0.22 6.33 8.06 -2.91 -0.02 6.31 15 Total: -1.00 -69.06 279.21 5.02 -64.05 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: 1.21 Total: -4.28 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 6.17 Total: 23.79 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -5.08 Total: -127.05 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.77 Total: -4.44 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.37 kcal Total: -69.06 5.02 -64.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801946.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.999 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds