Wall clock time and date at job start Tue Mar 31 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86795 * 119.99822 * 2 1 4 4 H 1.48506 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47319 * 299.99960 * 3 2 1 6 6 H 1.48496 * 109.47369 * 60.00510 * 3 2 1 7 7 C 1.39914 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99524 * 155.57807 * 7 2 1 9 9 C 1.40987 * 120.00242 * 335.57903 * 7 2 1 10 10 C 1.40994 * 120.32247 * 323.72977 * 9 7 2 11 11 F 1.35104 * 120.11356 * 0.02562 * 10 9 7 12 12 C 1.37740 * 119.76845 * 179.73981 * 10 9 7 13 13 C 1.38783 * 120.42415 * 0.53839 * 12 10 9 14 14 C 1.38228 * 120.66728 * 359.72130 * 13 12 10 15 15 C 1.38628 * 120.21620 * 0.02562 * 14 13 12 16 16 N 1.38798 * 120.21920 * 180.02562 * 15 14 13 17 17 C 1.46504 * 120.00195 * 359.97438 * 16 15 14 18 18 H 1.09002 * 109.23377 * 35.54944 * 17 16 15 19 19 C 1.52955 * 109.25026 * 155.00191 * 17 16 15 20 20 C 1.54027 * 106.91059 * 156.41520 * 19 17 16 21 21 S 1.81920 * 104.39165 * 327.19111 * 20 19 17 22 22 C 1.50442 * 109.24917 * 276.18175 * 17 16 15 23 23 O 1.21333 * 125.75429 * 37.83598 * 22 17 16 24 24 H 0.96998 * 119.99905 * 174.91004 * 1 2 3 25 25 H 1.07993 * 119.78487 * 180.25872 * 12 10 9 26 26 H 1.08007 * 119.66803 * 179.69121 * 13 12 10 27 27 H 1.07993 * 119.89366 * 179.97438 * 14 13 12 28 28 H 0.97005 * 120.00533 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.97392 * 275.77526 * 19 17 16 30 30 H 1.09000 * 109.97892 * 37.04806 * 19 17 16 31 31 H 1.09007 * 110.45290 * 85.91813 * 20 19 17 32 32 H 1.09003 * 110.45237 * 208.46133 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3464 -0.0006 5 1 1.8843 2.3964 -1.2124 6 1 1.8844 2.3964 1.2125 7 6 2.0086 -1.2117 -0.0005 8 1 3.0162 -1.2533 -0.3873 9 6 1.3983 -2.3783 0.5037 10 6 0.5362 -2.3063 1.6171 11 9 0.2895 -1.1164 2.2075 12 6 -0.0582 -3.4524 2.0970 13 6 0.1948 -4.6788 1.4986 14 6 1.0412 -4.7707 0.4096 15 6 1.6498 -3.6337 -0.0988 16 7 2.4993 -3.7259 -1.1927 17 6 2.7557 -5.0279 -1.8134 18 1 1.8469 -5.6286 -1.7763 19 6 3.1629 -4.8192 -3.2729 20 6 3.9727 -6.0600 -3.6939 21 16 4.8393 -6.5700 -2.1779 22 6 3.8460 -5.7334 -1.0539 23 8 3.9982 -5.7141 0.1497 24 1 -0.4850 -0.8367 -0.0745 25 1 -0.7219 -3.3970 2.9471 26 1 -0.2740 -5.5705 1.8881 27 1 1.2296 -5.7315 -0.0461 28 1 2.9232 -2.9282 -1.5462 29 1 2.2746 -4.7250 -3.8975 30 1 3.7787 -3.9244 -3.3635 31 1 3.3062 -6.8517 -4.0362 32 1 4.6893 -5.8007 -4.4733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167954544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:13 Heat of formation + Delta-G solvation = -56.822755 kcal Electronic energy + Delta-G solvation = -19772.769290 eV Core-core repulsion = 16545.690349 eV Total energy + Delta-G solvation = -3227.078941 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.13444 -39.55940 -37.75903 -36.11181 -33.77169 -32.91988 -29.52972 -28.32102 -26.65020 -24.96260 -24.05356 -21.80614 -20.92158 -20.02643 -17.96891 -17.48543 -16.91907 -16.23741 -16.06025 -14.84008 -14.67416 -14.40609 -14.17855 -14.00952 -13.98059 -13.89293 -13.56940 -13.13677 -12.77071 -12.25512 -12.21132 -11.63351 -11.51359 -11.25242 -11.03626 -10.87337 -10.63862 -10.42649 -10.35352 -9.93114 -9.50259 -8.90627 -8.80557 -8.53082 -7.42466 -7.15511 -6.63194 -4.34955 1.29209 1.66886 1.94739 2.63530 2.73410 3.19152 3.28578 3.37167 3.85235 4.08898 4.17885 4.58966 4.60969 4.67314 4.72571 5.07619 5.27093 5.30146 5.58402 5.64958 5.89516 5.96623 6.24695 6.30736 6.79111 7.05273 7.13453 7.17520 7.34712 7.66426 7.78494 7.91766 8.09400 8.15995 8.48567 8.71349 8.87720 10.17363 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.006111 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.728246 B = 4580.472074 C = 5490.804284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.042 3.958 3 Si 1.069 2.931 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.033 3.967 10 C 0.013 3.987 11 F -0.146 7.146 12 C -0.160 4.160 13 C -0.173 4.173 14 C -0.168 4.168 15 C 0.136 3.864 16 N -0.719 5.719 17 C 0.104 3.896 18 H 0.114 0.886 19 C -0.126 4.126 20 C -0.083 4.083 21 S -0.216 6.216 22 C 0.348 3.652 23 O -0.383 6.383 24 H 0.291 0.709 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.405 0.595 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 -8.346 -9.268 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.180 4.180 3 Si 0.894 3.106 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.091 0.909 9 C 0.028 3.972 10 C -0.008 4.008 11 F -0.124 7.124 12 C -0.180 4.180 13 C -0.193 4.193 14 C -0.191 4.191 15 C 0.037 3.963 16 N -0.355 5.355 17 C -0.013 4.013 18 H 0.131 0.869 19 C -0.165 4.165 20 C -0.232 4.232 21 S 0.015 5.985 22 C 0.109 3.891 23 O -0.255 6.255 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.242 0.758 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.537 -7.507 -8.399 12.553 hybrid contribution -0.764 -0.635 -0.096 0.998 sum 4.774 -8.143 -8.496 12.699 Atomic orbital electron populations 1.70380 1.08086 1.33543 1.29385 1.26772 0.95589 1.03845 0.91788 0.83568 0.75254 0.73848 0.77912 1.20437 1.20671 1.20005 1.19978 1.02211 0.93649 1.40623 0.90850 1.17166 0.95591 0.92174 0.92285 1.17512 1.06932 0.80319 0.96068 1.91372 1.93238 1.44964 1.82864 1.20448 1.03287 0.92378 1.01896 1.19922 1.04135 0.95619 0.99614 1.20039 1.03441 0.95183 1.00465 1.17524 0.95613 0.93684 0.89449 1.43759 1.52674 1.04996 1.34071 1.21862 0.98232 0.89395 0.91777 0.86887 1.22207 1.01962 0.98104 0.94180 1.24007 1.01737 1.00731 0.96733 1.86212 1.43514 1.62935 1.05849 1.27025 0.87163 0.81306 0.93560 1.90650 1.67114 1.53679 1.14073 0.89621 0.88135 0.88270 0.89137 0.75789 0.87658 0.88991 0.87686 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.67 12.02 55.55 0.67 -21.00 16 2 C 0.04 1.08 4.35 -17.32 -0.08 1.00 16 3 Si 1.07 22.53 30.00 -169.99 -5.10 17.43 16 4 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -13.91 8.10 -37.91 -0.31 -14.22 16 8 H 0.07 1.83 7.15 -52.48 -0.38 1.46 16 9 C 0.03 0.87 5.05 -106.57 -0.54 0.33 16 10 C 0.01 0.35 6.13 -38.72 -0.24 0.12 16 11 F -0.15 -4.06 14.39 2.25 0.03 -4.03 16 12 C -0.16 -3.78 9.99 -39.56 -0.40 -4.18 16 13 C -0.17 -3.79 10.03 -39.38 -0.40 -4.19 16 14 C -0.17 -3.66 8.62 -39.44 -0.34 -4.00 16 15 C 0.14 3.12 6.42 -83.32 -0.54 2.58 16 16 N -0.72 -13.48 5.08 -53.03 -0.27 -13.75 16 17 C 0.10 1.50 2.55 -69.23 -0.18 1.32 16 18 H 0.11 1.58 6.49 -51.93 -0.34 1.24 16 19 C -0.13 -1.21 6.18 -26.22 -0.16 -1.37 16 20 C -0.08 -0.65 7.22 37.69 0.27 -0.38 16 21 S -0.22 -2.68 22.85 -107.50 -2.46 -5.14 16 22 C 0.35 5.64 7.22 35.88 0.26 5.89 16 23 O -0.38 -7.87 17.23 5.51 0.09 -7.77 16 24 H 0.29 8.23 7.01 -40.82 -0.29 7.94 16 25 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 26 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 27 H 0.09 1.76 6.13 -52.49 -0.32 1.44 16 28 H 0.40 7.52 6.83 -40.82 -0.28 7.24 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -30.79 286.77 -8.26 -39.04 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.92 Total: 7.98 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.63 Total: -17.08 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.40 Total: -34.75 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.03 Total: -4.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.10 Total: 17.43 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.46 Total: -5.14 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.79 -8.26 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167954544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds