Wall clock time and date at job start Tue Mar 31 2020 05:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86795 * 119.99822 * 2 1 4 4 H 1.48506 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47319 * 299.99960 * 3 2 1 6 6 H 1.48496 * 109.47369 * 60.00510 * 3 2 1 7 7 C 1.39914 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99524 * 155.57807 * 7 2 1 9 9 C 1.40987 * 120.00242 * 335.57903 * 7 2 1 10 10 C 1.40994 * 120.32247 * 323.72977 * 9 7 2 11 11 F 1.35104 * 120.11356 * 0.02562 * 10 9 7 12 12 C 1.37740 * 119.76845 * 179.73981 * 10 9 7 13 13 C 1.38783 * 120.42415 * 0.53839 * 12 10 9 14 14 C 1.38228 * 120.66728 * 359.72130 * 13 12 10 15 15 C 1.38628 * 120.21620 * 0.02562 * 14 13 12 16 16 N 1.38798 * 120.21920 * 180.02562 * 15 14 13 17 17 C 1.46504 * 120.00195 * 359.97438 * 16 15 14 18 18 H 1.09002 * 109.23377 * 35.54944 * 17 16 15 19 19 C 1.52955 * 109.25026 * 155.00191 * 17 16 15 20 20 C 1.54027 * 106.91059 * 156.41520 * 19 17 16 21 21 S 1.81920 * 104.39165 * 327.19111 * 20 19 17 22 22 C 1.50442 * 109.24917 * 276.18175 * 17 16 15 23 23 O 1.21333 * 125.75429 * 37.83598 * 22 17 16 24 24 H 0.96998 * 119.99905 * 174.91004 * 1 2 3 25 25 H 1.07993 * 119.78487 * 180.25872 * 12 10 9 26 26 H 1.08007 * 119.66803 * 179.69121 * 13 12 10 27 27 H 1.07993 * 119.89366 * 179.97438 * 14 13 12 28 28 H 0.97005 * 120.00533 * 179.97438 * 16 15 14 29 29 H 1.09002 * 109.97392 * 275.77526 * 19 17 16 30 30 H 1.09000 * 109.97892 * 37.04806 * 19 17 16 31 31 H 1.09007 * 110.45290 * 85.91813 * 20 19 17 32 32 H 1.09003 * 110.45237 * 208.46133 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7031 1.3464 -0.0006 5 1 1.8843 2.3964 -1.2124 6 1 1.8844 2.3964 1.2125 7 6 2.0086 -1.2117 -0.0005 8 1 3.0162 -1.2533 -0.3873 9 6 1.3983 -2.3783 0.5037 10 6 0.5362 -2.3063 1.6171 11 9 0.2895 -1.1164 2.2075 12 6 -0.0582 -3.4524 2.0970 13 6 0.1948 -4.6788 1.4986 14 6 1.0412 -4.7707 0.4096 15 6 1.6498 -3.6337 -0.0988 16 7 2.4993 -3.7259 -1.1927 17 6 2.7557 -5.0279 -1.8134 18 1 1.8469 -5.6286 -1.7763 19 6 3.1629 -4.8192 -3.2729 20 6 3.9727 -6.0600 -3.6939 21 16 4.8393 -6.5700 -2.1779 22 6 3.8460 -5.7334 -1.0539 23 8 3.9982 -5.7141 0.1497 24 1 -0.4850 -0.8367 -0.0745 25 1 -0.7219 -3.3970 2.9471 26 1 -0.2740 -5.5705 1.8881 27 1 1.2296 -5.7315 -0.0461 28 1 2.9232 -2.9282 -1.5462 29 1 2.2746 -4.7250 -3.8975 30 1 3.7787 -3.9244 -3.3635 31 1 3.3062 -6.8517 -4.0362 32 1 4.6893 -5.8007 -4.4733 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167954544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:13 Heat of formation + Delta-G solvation = -76.017348 kcal Electronic energy + Delta-G solvation = -19773.601630 eV Core-core repulsion = 16545.690349 eV Total energy + Delta-G solvation = -3227.911281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.19527 -40.91116 -39.39930 -37.36694 -35.65797 -34.27254 -31.31391 -29.86669 -27.99619 -26.82111 -25.07591 -23.37172 -22.56122 -21.52467 -19.82898 -18.65159 -18.46151 -17.75334 -17.38249 -16.56122 -16.31207 -15.99352 -15.78756 -15.70265 -15.52071 -15.10693 -14.72231 -14.55001 -14.21550 -14.00662 -13.45015 -13.22339 -13.17525 -12.73763 -12.54093 -12.25087 -12.08592 -11.98996 -11.74663 -11.44307 -11.35244 -10.72948 -10.29846 -9.51463 -9.35662 -9.12231 -8.33194 -6.30310 0.25356 0.45088 0.75490 0.86740 1.11207 1.48139 1.60476 1.74447 2.35191 2.53947 2.75836 3.11688 3.38890 3.66969 3.81979 3.83703 4.03379 4.20978 4.30325 4.46125 4.57414 4.71457 4.84628 4.88793 5.00697 5.31563 5.39396 5.47848 5.81179 5.82885 5.92437 5.97983 6.24927 6.38353 6.84754 6.85890 7.01561 8.17511 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019759 B = 0.006111 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.728246 B = 4580.472074 C = 5490.804284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.005 3.995 3 Si 1.114 2.886 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.019 4.019 11 F -0.163 7.163 12 C -0.180 4.180 13 C -0.156 4.156 14 C -0.179 4.179 15 C 0.147 3.853 16 N -0.719 5.719 17 C 0.097 3.903 18 H 0.121 0.879 19 C -0.118 4.118 20 C -0.068 4.068 21 S -0.206 6.206 22 C 0.334 3.666 23 O -0.444 6.444 24 H 0.273 0.727 25 H 0.116 0.884 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.403 0.597 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 -10.011 -11.797 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.210 4.210 3 Si 0.933 3.067 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.206 1.206 7 C -0.587 4.587 8 H 0.092 0.908 9 C -0.009 4.009 10 C -0.041 4.041 11 F -0.142 7.142 12 C -0.200 4.200 13 C -0.176 4.176 14 C -0.203 4.203 15 C 0.046 3.954 16 N -0.352 5.352 17 C -0.018 4.018 18 H 0.138 0.862 19 C -0.156 4.156 20 C -0.215 4.215 21 S 0.026 5.974 22 C 0.099 3.901 23 O -0.323 6.323 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.240 0.760 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.154 0.846 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.480 -9.220 -11.006 15.752 hybrid contribution -1.000 -0.400 0.588 1.226 sum 5.480 -9.619 -10.418 15.202 Atomic orbital electron populations 1.70501 1.08933 1.32212 1.32772 1.28044 0.95591 1.06940 0.90430 0.83031 0.74922 0.70499 0.78242 1.18824 1.18727 1.20639 1.20083 1.02326 0.94361 1.41975 0.90824 1.17533 0.96712 0.93718 0.92966 1.18014 1.08463 0.80532 0.97079 1.91306 1.93527 1.46178 1.83237 1.20692 1.04090 0.92284 1.02945 1.20422 1.02542 0.96078 0.98509 1.20373 1.03265 0.95963 1.00680 1.17751 0.94910 0.92917 0.89824 1.43904 1.51431 1.07011 1.32891 1.22308 0.98369 0.87127 0.94043 0.86198 1.22249 1.03405 0.99140 0.90833 1.24314 1.02162 1.00510 0.94547 1.86208 1.42710 1.61427 1.07028 1.27331 0.88073 0.81395 0.93282 1.90629 1.69161 1.56082 1.16391 0.91616 0.86602 0.84736 0.86531 0.75980 0.85091 0.88774 0.84620 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.70 12.02 21.83 0.26 -46.44 16 2 C 0.01 0.27 4.35 85.24 0.37 0.64 16 3 Si 1.11 46.04 30.00 68.60 2.06 48.10 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.56 -29.88 8.10 23.35 0.19 -29.69 16 8 H 0.07 3.78 7.15 -2.91 -0.02 3.76 16 9 C 0.00 -0.20 5.05 -21.12 -0.11 -0.31 16 10 C -0.02 -1.06 6.13 22.83 0.14 -0.92 16 11 F -0.16 -9.56 14.39 44.97 0.65 -8.92 16 12 C -0.18 -8.59 9.99 22.28 0.22 -8.37 16 13 C -0.16 -6.64 10.03 22.40 0.22 -6.42 16 14 C -0.18 -7.62 8.62 22.36 0.19 -7.43 16 15 C 0.15 6.76 6.42 38.94 0.25 7.01 16 16 N -0.72 -26.47 5.08 -321.68 -1.64 -28.10 16 17 C 0.10 2.56 2.55 44.15 0.11 2.67 16 18 H 0.12 3.01 6.49 -2.39 -0.02 2.99 16 19 C -0.12 -1.78 6.18 30.93 0.19 -1.59 16 20 C -0.07 -0.70 7.22 72.33 0.52 -0.18 16 21 S -0.21 -4.50 22.85 -56.49 -1.29 -5.79 16 22 C 0.33 10.36 7.22 71.15 0.51 10.87 16 23 O -0.44 -18.39 17.23 -3.19 -0.06 -18.44 16 24 H 0.27 16.22 7.01 -92.71 -0.65 15.57 16 25 H 0.12 5.02 8.06 -2.91 -0.02 5.00 16 26 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 27 H 0.12 4.29 6.13 -2.91 -0.02 4.27 16 28 H 0.40 14.89 6.83 -92.70 -0.63 14.26 16 29 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 31 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -71.63 286.77 3.47 -68.17 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.66 Total: 25.13 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 2.82 Total: -33.70 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.37 Total: -74.54 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.06 Total: -18.44 kcal Atomic # 9 Polarization: -9.56 SS G_CDS: 0.65 Total: -8.92 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.06 Total: 48.10 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -1.29 Total: -5.79 kcal Total: -71.63 3.47 -68.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167954544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.852 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds