Wall clock time and date at job start Tue Mar 31 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48501 * 109.46703 * 240.00085 * 3 2 1 5 5 H 1.48495 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47481 * 119.99670 * 3 2 1 7 7 C 1.39933 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00372 * 197.75336 * 7 2 1 9 9 C 1.41406 * 119.99485 * 17.75187 * 7 2 1 10 10 C 1.40750 * 120.19362 * 204.36663 * 9 7 2 11 11 C 1.37875 * 119.86707 * 180.02562 * 10 9 7 12 12 F 1.35105 * 119.86179 * 179.97438 * 11 10 9 13 13 C 1.38745 * 120.27875 * 359.97251 * 11 10 9 14 14 C 1.39248 * 120.39848 * 0.02562 * 13 11 10 15 15 N 1.39673 * 119.94410 * 180.02562 * 14 13 11 16 16 C 1.46506 * 119.99694 * 0.02562 * 15 14 13 17 17 H 1.08995 * 109.23513 * 35.54610 * 16 15 14 18 18 C 1.52967 * 109.24895 * 155.00003 * 16 15 14 19 19 C 1.54023 * 106.94054 * 156.30950 * 18 16 15 20 20 S 1.81966 * 104.37386 * 327.23371 * 19 18 16 21 21 C 1.50449 * 109.17940 * 276.13502 * 16 15 14 22 22 O 1.21323 * 125.75475 * 37.93017 * 21 16 15 23 23 C 1.38339 * 120.12304 * 0.30278 * 14 13 11 24 24 H 0.96993 * 120.00231 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.06584 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.80296 * 180.02562 * 13 11 10 27 27 H 0.96994 * 120.00720 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.96781 * 275.69081 * 18 16 15 29 29 H 1.08994 * 109.96941 * 36.92544 * 18 16 15 30 30 H 1.09002 * 110.44796 * 85.93921 * 19 18 16 31 31 H 1.09003 * 110.44877 * 208.48334 * 19 18 16 32 32 H 1.08001 * 120.14062 * 179.71829 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0494 -1.2340 0.2857 9 6 1.3515 -2.4074 -0.3723 10 6 1.8271 -3.6495 0.0882 11 6 1.1821 -4.8111 -0.2799 12 9 1.6391 -6.0033 0.1618 13 6 0.0656 -4.7608 -1.1021 14 6 -0.4147 -3.5383 -1.5642 15 7 -1.5397 -3.4987 -2.3911 16 6 -2.2137 -4.7428 -2.7709 17 1 -2.1748 -5.4418 -1.9354 18 6 -3.6748 -4.4419 -3.1091 19 6 -4.1612 -5.5684 -4.0401 20 16 -2.6864 -6.0278 -5.0021 21 6 -1.5081 -5.3456 -3.9551 22 8 -0.3089 -5.3495 -4.1392 23 6 0.2238 -2.3630 -1.2107 24 1 -0.4850 0.8400 -0.0004 25 1 2.6956 -3.6925 0.7287 26 1 -0.4340 -5.6755 -1.3854 27 1 -1.8748 -2.6476 -2.7138 28 1 -4.2726 -4.4279 -2.1978 29 1 -3.7488 -3.4807 -3.6176 30 1 -4.5150 -6.4185 -3.4567 31 1 -4.9486 -5.2039 -4.6999 32 1 -0.1458 -1.4150 -1.5726 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167955055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:27 Heat of formation + Delta-G solvation = -78.316630 kcal Electronic energy + Delta-G solvation = -19286.806933 eV Core-core repulsion = 16058.795948 eV Total energy + Delta-G solvation = -3228.010986 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.063 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.63989 -40.85564 -39.31851 -37.52234 -35.60201 -34.11195 -31.27007 -30.00621 -27.86240 -27.28571 -25.06481 -23.36527 -22.46698 -21.66641 -19.57534 -18.64090 -18.12467 -17.47833 -17.28207 -16.91994 -16.52966 -16.30896 -16.07484 -15.79668 -15.54222 -15.12103 -14.68796 -14.62156 -14.17100 -13.81705 -13.47516 -13.23420 -13.07800 -12.79393 -12.62445 -12.31096 -12.12004 -12.00701 -11.75596 -11.58292 -11.41889 -10.94485 -10.22955 -9.51645 -9.33298 -8.72474 -8.17227 -6.45889 0.26289 0.44446 0.85991 0.96747 1.13903 1.40576 1.50701 1.55727 2.20980 2.46528 2.66834 3.11675 3.59442 3.65664 3.78409 3.85995 3.88069 4.23669 4.44233 4.64514 4.72212 4.82644 4.87328 4.92577 5.06643 5.20306 5.39024 5.58784 5.73545 5.92457 6.00173 6.02906 6.36208 6.71973 6.78637 6.88361 7.00451 8.28507 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020263 B = 0.005093 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.484348 B = 5496.635055 C = 6378.559110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.043 3.957 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.492 4.492 8 H 0.077 0.923 9 C 0.132 3.868 10 C -0.313 4.313 11 C 0.135 3.865 12 F -0.163 7.163 13 C -0.325 4.325 14 C 0.249 3.751 15 N -0.726 5.726 16 C 0.095 3.905 17 H 0.115 0.885 18 C -0.115 4.115 19 C -0.068 4.068 20 S -0.209 6.209 21 C 0.333 3.667 22 O -0.444 6.444 23 C -0.254 4.254 24 H 0.292 0.708 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.407 0.593 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -3.788 -6.444 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.174 4.174 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.095 0.905 9 C 0.129 3.871 10 C -0.335 4.335 11 C 0.115 3.885 12 F -0.142 7.142 13 C -0.349 4.349 14 C 0.148 3.852 15 N -0.360 5.360 16 C -0.020 4.020 17 H 0.132 0.868 18 C -0.154 4.154 19 C -0.216 4.216 20 S 0.024 5.976 21 C 0.099 3.901 22 O -0.322 6.322 23 C -0.279 4.279 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.244 0.756 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.092 -4.487 -7.586 15.782 hybrid contribution 0.870 1.104 1.238 1.873 sum -12.222 -3.383 -6.349 14.181 Atomic orbital electron populations 1.69850 1.08795 1.30926 1.33555 1.26715 0.95585 1.04219 0.90912 0.85241 0.78908 0.75550 0.79972 1.18784 1.18587 1.18491 1.19803 0.98445 0.92186 1.41604 0.90488 1.17407 0.90656 0.91678 0.87375 1.20936 1.07296 0.92151 1.13076 1.17375 0.94928 0.79372 0.96780 1.91326 1.88871 1.45616 1.88403 1.19789 1.04237 0.96654 1.14198 1.17221 0.86749 0.92527 0.88720 1.44212 1.30264 1.06817 1.54696 1.22326 0.94046 0.89425 0.96206 0.86788 1.22256 0.90005 1.00178 1.02924 1.24336 0.95002 1.02378 0.99895 1.86231 1.06578 1.69135 1.35693 1.27290 0.93272 0.79450 0.90124 1.90641 1.17031 1.51562 1.73007 1.20707 1.03125 0.95727 1.08293 0.89701 0.88103 0.87370 0.75594 0.84948 0.87980 0.84974 0.83214 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.78 10.96 21.82 0.24 -39.54 16 2 C 0.04 2.10 5.14 85.25 0.44 2.54 16 3 Si 0.98 36.95 29.59 68.60 2.03 38.98 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.49 -26.56 9.05 23.46 0.21 -26.34 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 9 C 0.13 7.34 5.57 -21.31 -0.12 7.22 16 10 C -0.31 -16.88 9.76 22.80 0.22 -16.66 16 11 C 0.13 6.89 7.28 22.30 0.16 7.05 16 12 F -0.16 -7.85 17.26 44.97 0.78 -7.07 16 13 C -0.33 -15.45 8.63 22.63 0.20 -15.26 16 14 C 0.25 11.41 6.39 38.16 0.24 11.65 16 15 N -0.73 -24.96 5.18 -323.13 -1.67 -26.63 16 16 C 0.10 2.50 2.56 44.15 0.11 2.61 16 17 H 0.11 3.09 6.49 -2.39 -0.02 3.08 16 18 C -0.12 -1.56 6.18 30.93 0.19 -1.37 16 19 C -0.07 -0.67 7.22 72.33 0.52 -0.15 16 20 S -0.21 -4.60 22.85 -56.49 -1.29 -5.89 16 21 C 0.33 10.53 7.21 71.16 0.51 11.04 16 22 O -0.44 -18.93 17.24 -3.16 -0.05 -18.99 16 23 C -0.25 -13.16 8.53 22.87 0.20 -12.97 16 24 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 25 H 0.10 5.25 8.06 -2.91 -0.02 5.23 16 26 H 0.11 4.71 6.12 -2.91 -0.02 4.69 16 27 H 0.41 12.55 8.41 -92.71 -0.78 11.77 16 28 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 6.07 6.16 -2.91 -0.02 6.05 16 Total: -1.00 -68.84 291.66 3.32 -65.52 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.40 Total: 24.26 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 2.89 Total: -30.64 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.43 Total: -66.18 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.99 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.78 Total: -7.07 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.29 Total: -5.89 kcal Total: -68.84 3.32 -65.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167955055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.793 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds