Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43200 * 119.99966 * 131.53747 * 3 2 1 5 5 N 3.51037 * 140.69012 * 131.53043 * 2 1 3 6 6 C 1.41168 * 120.00382 * 311.53667 * 3 2 1 7 7 C 1.39020 * 120.00070 * 174.53023 * 6 3 2 8 8 H 1.08002 * 119.99843 * 338.59933 * 7 6 3 9 9 C 1.40824 * 119.99960 * 158.32920 * 7 6 3 10 10 N 1.30347 * 119.99773 * 350.74375 * 9 7 6 11 11 Si 1.86801 * 120.00002 * 170.74559 * 9 7 6 12 12 H 1.48493 * 109.47071 * 59.99809 * 11 9 7 13 13 H 1.48499 * 109.47070 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46900 * 300.00067 * 11 9 7 15 15 N 1.38267 * 119.99922 * 354.52537 * 6 3 2 16 16 C 1.39960 * 119.99744 * 120.14617 * 15 6 3 17 17 C 1.39422 * 120.26870 * 352.55128 * 16 15 6 18 18 N 1.31496 * 121.24303 * 180.02562 * 17 16 15 19 19 C 1.32532 * 121.68301 * 0.02562 * 18 17 16 20 20 N 1.37449 * 133.52659 * 179.97438 * 19 18 17 21 21 H 0.96997 * 126.63866 * 0.04472 * 20 19 18 22 22 N 1.40215 * 106.72503 * 180.02562 * 20 19 18 23 23 N 1.28664 * 109.48178 * 359.97438 * 22 20 19 24 24 C 1.35237 * 110.09296 * 359.97438 * 23 22 20 25 25 C 1.38544 * 120.26689 * 172.28318 * 16 15 6 26 26 H 0.97002 * 119.99463 * 185.01800 * 10 9 7 27 27 H 0.96994 * 119.99938 * 300.14257 * 15 6 3 28 28 H 1.07996 * 119.38317 * 0.02917 * 17 16 15 29 29 H 1.08004 * 120.92395 * 359.97419 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2836 0.8233 -0.9283 5 7 3.8521 1.4745 -1.6648 6 6 3.2742 -0.8097 0.9151 7 6 4.6597 -0.8967 0.8410 8 1 5.1678 -0.6499 -0.0795 9 6 5.4011 -1.3013 1.9679 10 7 4.8143 -1.4196 3.1258 11 14 7.2253 -1.6682 1.8032 12 1 7.9333 -0.4537 1.3251 13 1 7.7705 -2.0704 3.1247 14 1 7.4222 -2.7717 0.8292 15 7 2.5880 -1.5167 1.8851 16 6 2.6806 -2.9125 1.9307 17 6 3.3338 -3.6071 0.9134 18 7 3.4316 -4.9182 0.9367 19 6 2.9158 -5.6373 1.9232 20 7 2.8735 -6.9849 2.1905 21 1 3.2512 -7.6947 1.6480 22 7 2.1790 -7.1349 3.3993 23 7 1.8254 -5.9781 3.8375 24 6 2.2420 -5.0121 2.9876 25 6 2.1287 -3.6147 2.9898 26 1 5.3377 -1.6271 3.9157 27 1 2.0425 -1.0454 2.5340 28 1 3.7677 -3.0580 0.0909 29 1 1.6216 -3.1003 3.7927 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080346.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = 183.080518 kcal Electronic energy + Delta-G solvation = -20401.422034 eV Core-core repulsion = 17133.807592 eV Total energy + Delta-G solvation = -3267.614442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.92040 -39.12706 -37.06783 -35.38505 -34.83468 -34.03574 -33.17836 -31.52142 -30.49115 -28.21307 -27.31818 -24.55920 -22.96921 -22.44108 -21.34804 -19.32948 -18.49628 -17.74131 -17.13424 -16.85302 -16.25604 -15.69509 -15.26410 -15.08773 -13.96625 -13.44182 -13.01970 -12.88559 -12.74800 -12.67696 -12.41243 -12.26209 -11.87649 -11.79459 -11.75181 -11.65327 -11.61535 -11.46976 -11.12997 -11.00825 -10.77032 -10.22506 -9.98817 -9.37313 -8.93649 -8.36468 -7.88346 -6.90182 -5.62237 0.52748 1.52857 2.12324 2.33717 2.42325 2.62603 2.67009 2.78803 3.29657 3.62931 3.78670 3.96366 3.99440 4.08045 4.21500 4.47501 4.64862 4.77551 5.04163 5.06417 5.25230 5.46525 5.75199 6.07723 6.12055 6.16292 6.29202 6.46453 6.88476 6.96819 7.10734 7.47879 7.60616 7.85516 8.04301 8.13376 8.29277 8.85384 9.02083 9.05771 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.007031 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.756196 B = 3981.259117 C = 5153.712192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.308 3.692 3 C -0.304 4.304 4 C 0.323 3.677 5 N -0.528 5.528 6 C 0.374 3.626 7 C -0.382 4.382 8 H 0.115 0.885 9 C 0.070 3.930 10 N -0.716 5.716 11 Si 0.920 3.080 12 H -0.251 1.251 13 H -0.269 1.269 14 H -0.248 1.248 15 N -0.647 5.647 16 C 0.195 3.805 17 C 0.149 3.851 18 N -0.464 5.464 19 C 0.222 3.778 20 N -0.489 5.489 21 H 0.446 0.554 22 N -0.003 5.003 23 N -0.220 5.220 24 C -0.017 4.017 25 C -0.094 4.094 26 H 0.304 0.696 27 H 0.408 0.592 28 H 0.184 0.816 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 -7.802 3.953 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C 0.000 4.000 3 C -0.323 4.323 4 C 0.015 3.985 5 N -0.210 5.210 6 C 0.270 3.730 7 C -0.410 4.410 8 H 0.132 0.868 9 C -0.162 4.162 10 N -0.334 5.334 11 Si 0.741 3.259 12 H -0.175 1.175 13 H -0.193 1.193 14 H -0.172 1.172 15 N -0.269 5.269 16 C 0.086 3.914 17 C -0.027 4.027 18 N -0.177 5.177 19 C -0.021 4.021 20 N -0.217 5.217 21 H 0.292 0.708 22 N 0.015 4.985 23 N -0.100 5.100 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.116 0.884 27 H 0.246 0.754 28 H 0.200 0.800 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.156 -8.333 3.419 9.544 hybrid contribution 1.055 0.440 0.366 1.201 sum 4.212 -7.893 3.786 9.714 Atomic orbital electron populations 1.81094 1.12404 1.14442 1.13155 1.25190 0.91821 0.91287 0.91703 1.12941 0.82190 1.22268 1.14854 1.24661 0.92073 0.90822 0.90940 1.81066 1.09585 1.15639 1.14710 1.16749 0.89209 0.85089 0.81928 1.20373 0.91256 1.30207 0.99137 0.86762 1.26485 1.03723 0.91619 0.94392 1.69467 1.40530 1.23090 1.00297 0.86030 0.78582 0.81331 0.79940 1.17492 1.19332 1.17157 1.41371 1.50652 1.01435 1.33398 1.18174 0.94931 0.84884 0.93457 1.22989 0.94801 0.87256 0.97693 1.66653 1.20093 1.07312 1.23628 1.19318 1.01468 0.86097 0.95244 1.47296 1.48103 1.05100 1.21199 0.70765 1.81524 1.07521 1.16390 0.93110 1.74702 1.16698 0.95518 1.23123 1.20072 1.04706 0.94887 0.94676 1.19933 1.05100 0.89307 0.98782 0.88354 0.75449 0.79960 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.58 18.54 41.84 0.78 -10.80 15 2 C 0.31 6.32 14.82 -22.48 -0.33 5.99 15 3 C -0.30 -5.90 5.88 -104.94 -0.62 -6.51 15 4 C 0.32 6.74 13.97 -22.49 -0.31 6.42 15 5 N -0.53 -11.66 18.53 41.82 0.78 -10.89 15 6 C 0.37 6.65 4.96 -83.56 -0.41 6.23 15 7 C -0.38 -6.71 6.85 -38.31 -0.26 -6.97 15 8 H 0.11 2.03 7.14 -52.49 -0.37 1.66 15 9 C 0.07 1.16 4.83 -17.20 -0.08 1.08 15 10 N -0.72 -12.00 11.05 55.59 0.61 -11.39 15 11 Si 0.92 13.59 29.58 -169.99 -5.03 8.56 15 12 H -0.25 -3.82 7.11 56.52 0.40 -3.42 15 13 H -0.27 -3.99 7.11 56.52 0.40 -3.58 15 14 H -0.25 -3.73 7.11 56.52 0.40 -3.33 15 15 N -0.65 -10.57 3.32 -8.09 -0.03 -10.60 15 16 C 0.19 3.15 5.17 -83.59 -0.43 2.71 15 17 C 0.15 2.44 9.79 -17.25 -0.17 2.27 15 18 N -0.46 -7.61 10.38 -12.16 -0.13 -7.73 15 19 C 0.22 3.59 8.50 -155.83 -1.32 2.27 15 20 N -0.49 -6.67 7.55 31.15 0.24 -6.44 15 21 H 0.45 4.40 8.96 -182.51 -1.64 2.77 15 22 N 0.00 -0.05 13.82 60.35 0.83 0.79 15 23 N -0.22 -3.68 12.39 32.18 0.40 -3.28 15 24 C -0.02 -0.29 7.28 -84.73 -0.62 -0.91 15 25 C -0.09 -1.49 10.09 -38.73 -0.39 -1.88 15 26 H 0.30 4.79 8.29 -40.82 -0.34 4.46 15 27 H 0.41 6.35 8.85 -40.82 -0.36 5.98 15 28 H 0.18 2.88 6.22 -52.49 -0.33 2.56 15 29 H 0.14 2.02 8.06 -52.48 -0.42 1.60 15 LS Contribution 286.15 15.07 4.31 4.31 Total: -1.00 -23.63 286.15 -4.45 -28.08 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -2.26 Total: 8.69 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -4.96 Total: 10.70 kcal Atomic # 7 Polarization: -63.82 SS G_CDS: 3.48 Total: -60.34 kcal Atomic # 14 Polarization: 13.59 SS G_CDS: -5.03 Total: 8.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -23.63 -4.45 -28.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080346.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.158 kcal (2) G-P(sol) polarization free energy of solvation -23.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds