Wall clock time and date at job start Tue Mar 31 2020 05:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43195 * 120.00136 * 256.90436 * 3 2 1 5 5 N 3.51036 * 140.68962 * 256.91145 * 2 1 3 6 6 C 1.41158 * 119.99928 * 76.90615 * 3 2 1 7 7 C 1.38985 * 119.99759 * 5.97956 * 6 3 2 8 8 H 1.07998 * 119.99374 * 224.48902 * 7 6 3 9 9 C 1.40812 * 120.00265 * 44.49112 * 7 6 3 10 10 N 1.30337 * 120.00418 * 13.75429 * 9 7 6 11 11 Si 1.86801 * 120.00103 * 193.75229 * 9 7 6 12 12 H 1.48510 * 109.46996 * 59.99886 * 11 9 7 13 13 H 1.48499 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47320 * 299.99944 * 11 9 7 15 15 N 1.38235 * 119.99812 * 185.97715 * 6 3 2 16 16 S 1.65598 * 119.99756 * 185.62392 * 15 6 3 17 17 O 1.42093 * 104.27542 * 181.33380 * 16 15 6 18 18 O 1.42100 * 104.27550 * 309.18701 * 16 15 6 19 19 C 1.81403 * 104.45127 * 65.25724 * 16 15 6 20 20 C 1.53777 * 113.61547 * 269.09728 * 19 16 15 21 21 C 1.53955 * 87.02055 * 220.05051 * 20 19 16 22 22 C 1.53781 * 87.11218 * 25.36441 * 21 20 19 23 23 H 0.96994 * 120.00997 * 184.93984 * 10 9 7 24 24 H 0.96995 * 120.00197 * 5.62224 * 15 6 3 25 25 H 1.08999 * 112.84498 * 40.29984 * 19 16 15 26 26 H 1.08997 * 113.61500 * 334.57325 * 20 19 16 27 27 H 1.09004 * 113.61247 * 105.47074 * 20 19 16 28 28 H 1.09002 * 113.53369 * 270.81742 * 21 20 19 29 29 H 1.09002 * 113.66723 * 139.93688 * 21 20 19 30 30 H 1.08996 * 113.61568 * 220.09420 * 22 21 20 31 31 H 1.09000 * 113.68878 * 89.19245 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2839 0.2819 1.2078 5 7 3.8521 0.5036 2.1661 6 6 3.2739 -0.2760 -1.1907 7 6 2.5846 -0.4261 -2.3882 8 1 2.8344 -1.2365 -3.0570 9 6 1.5608 0.4784 -2.7295 10 7 1.4341 1.5973 -2.0732 11 14 0.3841 0.0748 -4.1231 12 1 -0.3388 -1.1845 -3.8114 13 1 -0.5943 1.1807 -4.2808 14 1 1.1496 -0.0931 -5.3844 15 7 4.6506 -0.3975 -1.1656 16 16 5.4913 -0.5830 -2.5802 17 8 6.8461 -0.7048 -2.1692 18 8 4.8285 -1.6502 -3.2444 19 6 5.2332 0.9776 -3.4682 20 6 4.0091 0.9617 -4.3987 21 6 4.8672 1.7451 -5.4088 22 6 6.0974 1.1170 -4.7327 23 1 0.6870 2.1871 -2.2595 24 1 5.1242 -0.3741 -0.3194 25 1 5.2731 1.8484 -2.8138 26 1 3.7336 -0.0359 -4.7409 27 1 3.1606 1.5275 -4.0138 28 1 4.8058 2.8264 -5.2856 29 1 4.7267 1.4270 -6.4418 30 1 6.9323 1.8080 -4.6168 31 1 6.3950 0.1619 -5.1655 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188155920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:13 Heat of formation + Delta-G solvation = 7.219233 kcal Electronic energy + Delta-G solvation = -20372.002914 eV Core-core repulsion = 17167.621004 eV Total energy + Delta-G solvation = -3204.381911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.44146 -37.55475 -36.65938 -35.60996 -34.99216 -34.74434 -33.48219 -29.66686 -27.26050 -26.06572 -25.44890 -22.04421 -20.26919 -19.26640 -18.41875 -18.02586 -16.99081 -16.81870 -15.94349 -15.53156 -15.23866 -14.68396 -13.51651 -13.46863 -13.18779 -12.59147 -12.54815 -12.44230 -12.29688 -12.17276 -12.01642 -11.90775 -11.73019 -11.63080 -11.57789 -11.48299 -11.26357 -10.97265 -10.89762 -10.71014 -10.50373 -10.29441 -10.20734 -9.79851 -9.41640 -7.45736 -7.22015 -5.42218 0.62003 2.32924 2.86511 2.89124 2.91382 3.03744 3.59500 3.78021 3.97939 4.06652 4.25524 4.37353 4.39242 4.45778 4.85764 4.95274 5.01882 5.25396 5.50141 5.59634 5.63158 5.79784 5.83254 5.91032 6.12456 6.29792 6.42483 6.51530 6.59264 6.99919 7.41155 7.73774 8.00019 8.06522 8.83975 9.26625 9.52246 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.010831 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.663611 B = 2584.646362 C = 3864.575747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.352 3.648 3 C -0.254 4.254 4 C 0.300 3.700 5 N -0.526 5.526 6 C 0.424 3.576 7 C -0.500 4.500 8 H 0.140 0.860 9 C 0.097 3.903 10 N -0.735 5.735 11 Si 0.906 3.094 12 H -0.252 1.252 13 H -0.271 1.271 14 H -0.250 1.250 15 N -1.049 6.049 16 S 2.612 3.388 17 O -0.972 6.972 18 O -0.941 6.941 19 C -0.597 4.597 20 C -0.097 4.097 21 C -0.137 4.137 22 C -0.112 4.112 23 H 0.301 0.699 24 H 0.413 0.587 25 H 0.151 0.849 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 1.633 -10.547 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C 0.042 3.958 3 C -0.274 4.274 4 C -0.007 4.007 5 N -0.208 5.208 6 C 0.316 3.684 7 C -0.532 4.532 8 H 0.157 0.843 9 C -0.132 4.132 10 N -0.355 5.355 11 Si 0.728 3.272 12 H -0.176 1.176 13 H -0.196 1.196 14 H -0.174 1.174 15 N -0.790 5.790 16 S 2.709 3.291 17 O -0.963 6.963 18 O -0.931 6.931 19 C -0.708 4.708 20 C -0.135 4.135 21 C -0.175 4.175 22 C -0.151 4.151 23 H 0.113 0.887 24 H 0.248 0.752 25 H 0.169 0.831 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.081 1.436 -9.453 10.828 hybrid contribution -0.385 0.654 -0.200 0.785 sum 4.696 2.090 -9.653 10.936 Atomic orbital electron populations 1.80963 1.12332 1.17332 1.10375 1.24207 0.91010 0.89763 0.90834 1.12715 0.83729 1.43715 0.87214 1.25442 0.92717 0.90415 0.92138 1.81091 1.09922 1.18872 1.10959 1.16806 0.78765 0.80513 0.92289 1.20066 1.16200 1.12943 1.03975 0.84303 1.25923 0.96174 0.92905 0.98235 1.69466 1.25898 1.06411 1.33744 0.86330 0.79848 0.80645 0.80387 1.17609 1.19564 1.17411 1.54092 1.15664 1.83748 1.25453 1.04963 0.72588 0.77502 0.74043 1.93561 1.34714 1.87042 1.80968 1.93567 1.74506 1.50056 1.74938 1.31686 1.07752 1.22378 1.08967 1.22872 0.94916 1.02855 0.92871 1.22895 0.95561 1.00260 0.98824 1.22571 0.97355 1.02286 0.92909 0.88684 0.75250 0.83099 0.87759 0.88269 0.89857 0.91030 0.89911 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.91 18.54 41.84 0.78 -12.14 16 2 C 0.35 8.31 11.60 -22.47 -0.26 8.04 16 3 C -0.25 -5.60 5.37 -104.94 -0.56 -6.16 16 4 C 0.30 6.66 14.12 -22.48 -0.32 6.34 16 5 N -0.53 -11.99 18.54 41.83 0.78 -11.22 16 6 C 0.42 8.59 6.05 -83.59 -0.51 8.08 16 7 C -0.50 -9.96 4.74 -38.33 -0.18 -10.14 16 8 H 0.14 2.72 5.42 -52.49 -0.28 2.44 16 9 C 0.10 1.91 2.06 -17.21 -0.04 1.88 16 10 N -0.73 -15.04 10.92 55.59 0.61 -14.43 16 11 Si 0.91 15.94 29.14 -169.99 -4.95 10.98 16 12 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 13 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 14 H -0.25 -3.97 7.11 56.52 0.40 -3.57 16 15 N -1.05 -18.73 5.63 32.59 0.18 -18.55 16 16 S 2.61 43.04 5.16 -107.50 -0.55 42.49 16 17 O -0.97 -17.72 18.08 -57.54 -1.04 -18.76 16 18 O -0.94 -17.28 14.31 -57.54 -0.82 -18.11 16 19 C -0.60 -8.17 4.21 -25.92 -0.11 -8.28 16 20 C -0.10 -1.36 5.03 -25.83 -0.13 -1.49 16 21 C -0.14 -1.52 8.09 -25.83 -0.21 -1.72 16 22 C -0.11 -1.26 7.67 -25.92 -0.20 -1.46 16 23 H 0.30 5.91 8.29 -40.82 -0.34 5.57 16 24 H 0.41 7.07 7.67 -34.47 -0.26 6.80 16 25 H 0.15 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.10 1.50 6.72 -51.93 -0.35 1.15 16 27 H 0.10 1.51 5.65 -51.93 -0.29 1.21 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 284.98 15.07 4.29 4.29 Total: -1.00 -26.72 284.98 -5.68 -32.41 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -2.44 Total: 7.93 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.51 Total: -4.90 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 2.34 Total: -56.34 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.86 Total: -36.87 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -4.95 Total: 10.98 kcal Atomic # 16 Polarization: 43.04 SS G_CDS: -0.55 Total: 42.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.72 -5.68 -32.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188155920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.625 kcal (2) G-P(sol) polarization free energy of solvation -26.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds