Wall clock time and date at job start Tue Mar 31 2020 05:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.43201 * 119.99662 * 108.45709 * 3 2 1 5 5 N 3.51041 * 140.68760 * 108.45055 * 2 1 3 6 6 C 1.41144 * 120.00144 * 288.45701 * 3 2 1 7 7 C 1.38983 * 120.00051 * 5.90257 * 6 3 2 8 8 H 1.08006 * 120.00375 * 225.80168 * 7 6 3 9 9 C 1.40822 * 120.00151 * 45.80745 * 7 6 3 10 10 N 1.30336 * 119.99915 * 11.25587 * 9 7 6 11 11 Si 1.86794 * 120.00044 * 191.26287 * 9 7 6 12 12 H 1.48500 * 109.47336 * 59.99972 * 11 9 7 13 13 H 1.48511 * 109.46966 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47285 * 299.99320 * 11 9 7 15 15 N 1.38235 * 119.99821 * 185.90838 * 6 3 2 16 16 S 1.65600 * 119.99739 * 184.84069 * 15 6 3 17 17 O 1.42104 * 104.27664 * 306.11011 * 16 15 6 18 18 O 1.42101 * 104.27476 * 178.25574 * 16 15 6 19 19 C 1.81394 * 104.45322 * 62.18251 * 16 15 6 20 20 C 1.53001 * 109.47294 * 174.31390 * 19 16 15 21 21 C 1.52998 * 117.49576 * 243.74640 * 20 19 16 22 22 C 1.53004 * 117.49952 * 175.09077 * 20 19 16 23 23 H 0.96993 * 120.00369 * 184.97035 * 10 9 7 24 24 H 0.96998 * 120.00180 * 4.83741 * 15 6 3 25 25 H 1.09006 * 109.46859 * 294.31374 * 19 16 15 26 26 H 1.09000 * 109.47136 * 54.30801 * 19 16 15 27 27 H 1.08997 * 115.55062 * 29.41808 * 20 19 16 28 28 H 1.09002 * 117.50171 * 0.02562 * 21 20 19 29 29 H 1.09004 * 117.49934 * 145.02007 * 21 20 19 30 30 H 1.08997 * 117.49823 * 214.97988 * 22 20 19 31 31 H 1.09005 * 117.49607 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 0.3936 -1.1764 5 7 3.8520 0.7039 -2.1097 6 6 3.2740 -0.3860 1.1594 7 6 2.5848 -0.8838 2.2590 8 1 2.8203 -0.5269 3.2508 9 6 1.5796 -1.8536 2.0800 10 7 1.4422 -2.4445 0.9264 11 14 0.4430 -2.2931 3.4957 12 1 -0.2997 -1.0822 3.9284 13 1 -0.5208 -3.3324 3.0524 14 1 1.2455 -2.8139 4.6314 15 7 4.6507 -0.2695 1.2014 16 16 5.4898 -0.8335 2.5130 17 8 4.8723 -0.1978 3.6238 18 8 6.8514 -0.5857 2.1909 19 6 5.1546 -2.6161 2.5325 20 6 5.9941 -3.2810 3.6252 21 6 7.0476 -4.2995 3.1852 22 6 5.7684 -4.7727 3.8801 23 1 0.7059 -3.0588 0.7808 24 1 5.1254 0.1426 0.4626 25 1 4.0966 -2.7846 2.7339 26 1 5.4128 -3.0450 1.5643 27 1 6.2289 -2.6535 4.4849 28 1 7.1429 -4.4956 2.1172 29 1 7.9754 -4.3423 3.7556 30 1 5.8552 -5.1265 4.9074 31 1 5.0216 -5.2803 3.2695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188990280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:37 Heat of formation + Delta-G solvation = 3.894423 kcal Electronic energy + Delta-G solvation = -19783.948132 eV Core-core repulsion = 16579.422047 eV Total energy + Delta-G solvation = -3204.526085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.69386 -37.51392 -36.67773 -35.61882 -35.03438 -34.77239 -33.47874 -29.70558 -29.14147 -27.07339 -22.45160 -22.13845 -21.08349 -19.70740 -18.42666 -18.04788 -16.94398 -16.66887 -16.10245 -15.36193 -15.26587 -14.57040 -14.31428 -13.48546 -13.29283 -13.10250 -12.59298 -12.38397 -12.23187 -11.94222 -11.85901 -11.79395 -11.69474 -11.58624 -11.57384 -11.50920 -11.27345 -11.13883 -11.01087 -10.92633 -10.71039 -10.28715 -10.22549 -9.91877 -9.55366 -7.46203 -7.25955 -5.48790 0.56397 2.28730 2.86101 2.88790 2.91460 3.03154 3.59677 3.65702 3.74472 4.00139 4.03821 4.28381 4.36712 4.54945 4.60760 4.86534 4.92548 5.05227 5.21543 5.40409 5.49185 5.58031 5.72493 5.75912 5.85635 6.05789 6.19485 6.26146 6.54129 6.94875 7.36687 7.67979 7.96113 8.03067 8.79392 9.23704 9.51624 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.008815 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.192365 B = 3175.585447 C = 4328.594433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.352 3.648 3 C -0.246 4.246 4 C 0.300 3.700 5 N -0.522 5.522 6 C 0.426 3.574 7 C -0.513 4.513 8 H 0.137 0.863 9 C 0.092 3.908 10 N -0.738 5.738 11 Si 0.914 3.086 12 H -0.252 1.252 13 H -0.271 1.271 14 H -0.253 1.253 15 N -1.050 6.050 16 S 2.617 3.383 17 O -0.943 6.943 18 O -0.968 6.968 19 C -0.586 4.586 20 C -0.149 4.149 21 C -0.175 4.175 22 C -0.163 4.163 23 H 0.301 0.699 24 H 0.415 0.585 25 H 0.160 0.840 26 H 0.132 0.868 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.670 -7.075 7.792 12.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C 0.041 3.959 3 C -0.266 4.266 4 C -0.008 4.008 5 N -0.204 5.204 6 C 0.318 3.682 7 C -0.545 4.545 8 H 0.154 0.846 9 C -0.138 4.138 10 N -0.358 5.358 11 Si 0.736 3.264 12 H -0.176 1.176 13 H -0.196 1.196 14 H -0.177 1.177 15 N -0.791 5.791 16 S 2.713 3.287 17 O -0.933 6.933 18 O -0.958 6.958 19 C -0.716 4.716 20 C -0.169 4.169 21 C -0.212 4.212 22 C -0.201 4.201 23 H 0.113 0.887 24 H 0.249 0.751 25 H 0.178 0.822 26 H 0.150 0.850 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.291 -6.343 6.931 11.308 hybrid contribution -0.547 -0.762 0.026 0.939 sum 5.744 -7.105 6.957 11.484 Atomic orbital electron populations 1.80961 1.12308 1.17336 1.10005 1.24185 0.90995 0.89294 0.91408 1.12758 0.83805 1.38197 0.91827 1.25430 0.92751 0.90680 0.91956 1.81094 1.09869 1.18293 1.11147 1.16841 0.78820 0.80868 0.91669 1.19984 1.17899 1.20302 0.96322 0.84561 1.25965 0.96105 0.93707 0.97975 1.69445 1.25611 1.17296 1.23489 0.86162 0.79756 0.80064 0.80405 1.17551 1.19593 1.17730 1.54143 1.15661 1.70674 1.38610 1.04790 0.72660 0.77764 0.73504 1.93584 1.76376 1.71986 1.51325 1.93573 1.33653 1.84875 1.83703 1.30113 1.11452 1.24062 1.05936 1.21662 1.02336 0.93591 0.99328 1.23142 0.93555 1.02771 1.01705 1.22990 1.00013 0.95148 1.01979 0.88650 0.75061 0.82223 0.84978 0.87020 0.88206 0.88283 0.88380 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.84 18.54 41.84 0.78 -12.06 16 2 C 0.35 8.31 11.63 -22.47 -0.26 8.05 16 3 C -0.25 -5.42 5.36 -104.94 -0.56 -5.98 16 4 C 0.30 6.59 14.11 -22.48 -0.32 6.27 16 5 N -0.52 -11.77 18.54 41.83 0.78 -11.00 16 6 C 0.43 8.64 6.01 -83.60 -0.50 8.14 16 7 C -0.51 -10.38 5.59 -38.33 -0.21 -10.60 16 8 H 0.14 2.71 5.92 -52.48 -0.31 2.40 16 9 C 0.09 1.85 4.10 -17.21 -0.07 1.78 16 10 N -0.74 -15.42 10.95 55.59 0.61 -14.82 16 11 Si 0.91 16.22 29.58 -169.99 -5.03 11.19 16 12 H -0.25 -4.72 7.11 56.52 0.40 -4.32 16 13 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 14 H -0.25 -4.18 7.11 56.52 0.40 -3.78 16 15 N -1.05 -18.56 5.64 32.59 0.18 -18.38 16 16 S 2.62 42.80 4.97 -107.50 -0.53 42.27 16 17 O -0.94 -17.58 15.61 -57.54 -0.90 -18.48 16 18 O -0.97 -17.28 18.08 -57.54 -1.04 -18.32 16 19 C -0.59 -8.04 6.01 37.16 0.22 -7.82 16 20 C -0.15 -1.81 5.75 -90.62 -0.52 -2.33 16 21 C -0.17 -1.80 10.18 -26.70 -0.27 -2.08 16 22 C -0.16 -1.68 10.25 -26.69 -0.27 -1.95 16 23 H 0.30 6.01 8.29 -40.82 -0.34 5.67 16 24 H 0.41 6.96 7.66 -34.47 -0.26 6.70 16 25 H 0.16 2.30 6.38 -51.92 -0.33 1.97 16 26 H 0.13 1.62 7.88 -51.92 -0.41 1.22 16 27 H 0.11 1.25 8.06 -51.93 -0.42 0.84 16 28 H 0.10 0.98 8.03 -51.93 -0.42 0.57 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 298.86 15.07 4.50 4.50 Total: -1.00 -27.26 298.86 -5.98 -33.24 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -2.55 Total: 8.36 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.77 Total: -6.52 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 2.34 Total: -56.26 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -1.94 Total: -36.79 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal Atomic # 16 Polarization: 42.80 SS G_CDS: -0.53 Total: 42.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.26 -5.98 -33.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188990280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.135 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds