Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99818 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99573 * 3 2 1 5 5 H 1.48494 * 109.47334 * 30.00362 * 3 2 1 6 6 H 1.48506 * 109.46800 * 150.00039 * 3 2 1 7 7 C 1.37881 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99334 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00314 * 359.97438 * 7 2 1 10 10 O 1.42105 * 106.40403 * 293.54303 * 9 7 2 11 11 O 1.42098 * 106.40145 * 66.46232 * 9 7 2 12 12 N 1.65606 * 107.21910 * 180.02562 * 9 7 2 13 13 C 1.47422 * 125.65216 * 90.02265 * 12 9 7 14 14 C 1.54906 * 104.83351 * 155.83517 * 13 12 9 15 15 C 1.55162 * 101.58107 * 37.00953 * 14 13 12 16 16 C 1.47026 * 125.64267 * 269.71627 * 12 9 7 17 17 H 1.08999 * 109.88584 * 300.51047 * 16 12 9 18 18 C 1.50707 * 109.88175 * 61.68149 * 16 12 9 19 19 C 1.38231 * 120.00087 * 39.72337 * 18 16 12 20 20 C 1.38233 * 119.99945 * 179.81325 * 19 18 16 21 21 C 1.38240 * 119.99808 * 0.41381 * 20 19 18 22 22 C 1.38237 * 119.99899 * 359.81633 * 21 20 19 23 23 C 1.38233 * 120.00188 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99726 * 0.02562 * 1 2 3 25 25 H 1.08994 * 110.36648 * 274.68108 * 13 12 9 26 26 H 1.09004 * 110.36144 * 36.89109 * 13 12 9 27 27 H 1.08995 * 111.00476 * 155.08777 * 14 13 12 28 28 H 1.09003 * 111.00495 * 278.94112 * 14 13 12 29 29 H 1.09003 * 110.71350 * 82.86045 * 15 14 13 30 30 H 1.08999 * 110.71928 * 205.95528 * 15 14 13 31 31 H 1.08000 * 120.00037 * 359.97438 * 19 18 16 32 32 H 1.07993 * 120.00000 * 180.20702 * 20 19 18 33 33 H 1.07999 * 119.99867 * 179.79169 * 21 20 19 34 34 H 1.08003 * 119.99879 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.00071 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4519 -2.7956 1.2494 11 8 0.4510 -2.7950 -1.2500 12 7 2.2484 -3.9355 -0.0005 13 6 2.8316 -4.5665 1.1974 14 6 3.2929 -5.9671 0.7231 15 6 3.8040 -5.6584 -0.7090 16 6 2.8259 -4.5683 -1.1953 17 1 2.0351 -5.0183 -1.7955 18 6 3.5705 -3.5419 -2.0098 19 6 4.3313 -2.5768 -1.3769 20 6 5.0173 -1.6377 -2.1241 21 6 4.9356 -1.6584 -3.5039 22 6 4.1708 -2.6207 -4.1366 23 6 3.4883 -3.5624 -3.3896 24 1 -0.4849 0.8400 -0.0004 25 1 3.6831 -3.9874 1.5546 26 1 2.0802 -4.6581 1.9817 27 1 4.0980 -6.3470 1.3519 28 1 2.4566 -6.6658 0.6971 29 1 4.8258 -5.2799 -0.6804 30 1 3.7399 -6.5443 -1.3408 31 1 4.3919 -2.5581 -0.2988 32 1 5.6144 -0.8858 -1.6298 33 1 5.4688 -0.9227 -4.0876 34 1 4.1066 -2.6366 -5.2146 35 1 2.8905 -4.3139 -3.8838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = -88.015877 kcal Electronic energy + Delta-G solvation = -20969.560559 eV Core-core repulsion = 17864.589287 eV Total energy + Delta-G solvation = -3104.971272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64765 -38.55789 -37.41850 -36.14986 -35.16182 -32.67540 -31.84701 -31.47037 -28.71450 -28.16496 -24.01633 -23.34747 -22.41669 -21.69796 -20.60362 -19.15093 -18.45021 -17.63671 -17.00954 -16.87508 -16.21025 -15.82764 -15.58983 -15.48551 -14.59870 -14.38840 -14.23901 -14.12219 -13.94002 -13.66244 -13.26641 -13.09745 -13.00575 -12.66426 -12.53140 -12.47263 -12.32838 -12.19687 -11.98271 -11.88129 -11.66913 -11.47193 -11.24649 -10.94320 -9.89282 -9.64489 -9.41387 -8.72503 -7.42226 0.25413 0.57448 0.64754 1.30151 1.31547 1.46150 2.19356 2.59747 2.82769 3.09058 3.64267 3.72873 3.83293 3.97419 4.11992 4.24752 4.28000 4.36509 4.44062 4.49382 4.68848 4.72605 4.81307 4.93375 5.02299 5.06790 5.12187 5.20853 5.22601 5.27236 5.37877 5.44695 5.67017 5.71905 5.80330 5.93738 5.97930 6.25035 6.81716 8.23066 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.010585 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.564000 B = 2644.689176 C = 3793.031381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.073 3.927 3 Si 0.980 3.020 4 H -0.256 1.256 5 H -0.265 1.265 6 H -0.242 1.242 7 C -1.022 5.022 8 H 0.127 0.873 9 S 2.725 3.275 10 O -1.047 7.047 11 O -1.040 7.040 12 N -1.016 6.016 13 C 0.102 3.898 14 C -0.116 4.116 15 C -0.105 4.105 16 C 0.183 3.817 17 H 0.069 0.931 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.120 4.120 24 H 0.296 0.704 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.713 -7.749 -3.766 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.165 1.165 7 C -1.156 5.156 8 H 0.145 0.855 9 S 2.829 3.171 10 O -1.037 7.037 11 O -1.030 7.030 12 N -0.854 5.854 13 C -0.022 4.022 14 C -0.155 4.155 15 C -0.144 4.144 16 C 0.077 3.923 17 H 0.087 0.913 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.154 4.154 21 C -0.145 4.145 22 C -0.149 4.149 23 C -0.139 4.139 24 H 0.106 0.894 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.500 -7.780 -3.733 15.189 hybrid contribution 0.011 1.427 0.116 1.432 sum 12.511 -6.353 -3.617 14.490 Atomic orbital electron populations 1.70014 1.08841 1.32019 1.42328 1.25942 0.95191 1.05101 0.87638 0.85265 0.79562 0.75287 0.80009 1.18057 1.18979 1.16500 1.31018 1.07371 1.11700 1.65532 0.85472 0.99683 0.72375 0.73754 0.71252 1.93286 1.74625 1.88489 1.47316 1.93285 1.74529 1.88312 1.46898 1.58721 1.60479 1.53228 1.12961 1.22245 0.97918 0.95130 0.86947 1.22796 1.02157 0.94298 0.96234 1.22684 0.98057 0.96855 0.96824 1.20366 0.94782 0.91957 0.85229 0.91329 1.20387 0.98593 0.98194 0.94744 1.21053 0.96168 0.94753 1.00016 1.21360 1.00342 0.98783 0.94898 1.21439 0.99470 0.98975 0.94586 1.21387 0.97436 0.95221 1.00875 1.21235 0.99412 1.00062 0.93169 0.89404 0.90981 0.91842 0.86759 0.90344 0.89483 0.87729 0.86459 0.84964 0.83825 0.83733 0.85095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.31 13.19 21.45 0.28 -55.03 16 2 C 0.07 4.17 5.46 84.65 0.46 4.63 16 3 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.24 -9.54 7.11 99.48 0.71 -8.83 16 7 C -1.02 -57.02 8.88 67.74 0.60 -56.42 16 8 H 0.13 6.36 5.07 -2.91 -0.01 6.34 16 9 S 2.72 153.73 4.92 -56.49 -0.28 153.45 16 10 O -1.05 -65.49 17.34 -128.00 -2.22 -67.71 16 11 O -1.04 -65.12 17.60 -128.00 -2.25 -67.38 16 12 N -1.02 -42.36 2.66 -488.13 -1.30 -43.66 16 13 C 0.10 3.34 7.11 86.85 0.62 3.96 16 14 C -0.12 -2.57 7.08 31.99 0.23 -2.34 16 15 C -0.11 -2.42 6.45 31.78 0.20 -2.22 16 16 C 0.18 6.31 3.03 44.59 0.14 6.44 16 17 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 18 C -0.12 -4.19 4.57 -19.86 -0.09 -4.28 16 19 C -0.10 -3.61 6.78 22.27 0.15 -3.46 16 20 C -0.14 -4.33 10.05 22.27 0.22 -4.11 16 21 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 22 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 23 C -0.12 -3.92 9.68 22.27 0.22 -3.71 16 24 H 0.30 16.42 8.31 -92.71 -0.77 15.65 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 2.22 7.78 -2.39 -0.02 2.21 16 27 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.84 7.78 -2.39 -0.02 1.82 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 4.19 6.78 -2.91 -0.02 4.17 16 32 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.13 3.76 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -80.32 304.26 0.54 -79.77 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.09 Total: 24.83 kcal Atomic # 6 Polarization: -71.69 SS G_CDS: 3.19 Total: -68.50 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -1.02 Total: -98.69 kcal Atomic # 8 Polarization: -130.61 SS G_CDS: -4.47 Total: -135.09 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 153.73 SS G_CDS: -0.28 Total: 153.45 kcal Total: -80.32 0.54 -79.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.241 kcal (2) G-P(sol) polarization free energy of solvation -80.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds