Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48498 * 109.47477 * 270.00403 * 3 2 1 5 5 H 1.48504 * 109.47129 * 30.00302 * 3 2 1 6 6 H 1.48501 * 109.47325 * 150.00370 * 3 2 1 7 7 C 1.37871 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00042 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00295 * 359.97438 * 7 2 1 10 10 O 1.42103 * 106.40080 * 66.46381 * 9 7 2 11 11 O 1.42100 * 106.40089 * 293.54351 * 9 7 2 12 12 N 1.65593 * 107.21986 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00236 * 65.00124 * 12 9 7 14 14 C 1.53000 * 109.47306 * 164.58217 * 13 12 9 15 15 C 1.50703 * 115.54992 * 281.77458 * 14 13 12 16 16 C 1.38235 * 119.99668 * 127.98990 * 15 14 13 17 17 C 1.38236 * 119.99461 * 179.74162 * 16 15 14 18 18 C 1.38235 * 120.00353 * 0.53005 * 17 16 15 19 19 C 1.38240 * 119.99619 * 359.74368 * 18 17 16 20 20 C 1.38234 * 120.00327 * 359.97438 * 19 18 17 21 21 C 1.52996 * 117.49968 * 136.06251 * 14 13 12 22 22 C 1.52995 * 60.00280 * 252.51359 * 21 14 13 23 23 H 0.97008 * 119.99830 * 359.97438 * 1 2 3 24 24 H 0.97003 * 120.00029 * 245.00015 * 12 9 7 25 25 H 1.09004 * 109.46713 * 44.58329 * 13 12 9 26 26 H 1.08999 * 109.47055 * 284.58685 * 13 12 9 27 27 H 1.07994 * 120.00483 * 359.97438 * 16 15 14 28 28 H 1.08005 * 120.00386 * 180.29127 * 17 16 15 29 29 H 1.07995 * 120.00638 * 179.76456 * 18 17 16 30 30 H 1.08000 * 119.99641 * 180.02562 * 19 18 17 31 31 H 1.07992 * 120.00395 * 180.02562 * 20 19 18 32 32 H 1.08998 * 117.49838 * 0.02562 * 21 14 13 33 33 H 1.09000 * 117.50030 * 145.01937 * 21 14 13 34 34 H 1.09004 * 117.49609 * 252.51134 * 22 21 14 35 35 H 1.08995 * 117.52062 * 107.48060 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9353 -0.0005 13 6 3.1393 -4.1088 1.1493 14 6 3.7967 -5.4887 1.0815 15 6 2.9324 -6.6427 1.5200 16 6 2.7791 -7.7430 0.6973 17 6 1.9905 -8.8038 1.1019 18 6 1.3465 -8.7597 2.3243 19 6 1.4953 -7.6569 3.1445 20 6 2.2885 -6.5985 2.7425 21 6 5.2945 -5.5732 1.3820 22 6 4.7915 -5.7423 -0.0530 23 1 -0.4850 0.8401 0.0004 24 1 2.3171 -4.5324 -0.7619 25 1 2.5634 -4.0256 2.0710 26 1 3.9098 -3.3380 1.1315 27 1 3.2783 -7.7755 -0.2597 28 1 1.8744 -9.6656 0.4613 29 1 0.7274 -9.5868 2.6387 30 1 0.9925 -7.6226 4.0997 31 1 2.4052 -5.7372 3.3834 32 1 5.8115 -4.6458 1.6284 33 1 5.6551 -6.4635 1.8972 34 1 4.8211 -6.7440 -0.4819 35 1 4.9773 -4.9262 -0.7512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -47.496929 kcal Electronic energy + Delta-G solvation = -19812.024095 eV Core-core repulsion = 16708.809857 eV Total energy + Delta-G solvation = -3103.214238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77638 -37.27881 -35.14130 -33.89076 -33.39600 -32.96629 -30.84557 -30.47281 -26.12253 -25.98107 -23.01227 -22.81171 -21.76615 -19.46889 -18.86450 -17.44823 -16.98072 -16.14146 -15.72584 -15.07794 -14.81327 -14.56015 -14.46998 -14.09798 -13.79271 -13.36585 -13.18858 -12.73785 -12.51975 -12.11743 -11.96593 -11.48122 -11.29437 -11.20454 -11.08252 -11.02721 -10.59894 -10.50747 -10.23275 -10.18957 -10.12981 -9.96199 -9.22768 -8.97029 -8.81299 -8.55863 -8.37457 -6.67570 -5.29428 1.43696 1.50865 2.39020 3.07764 3.14548 3.20566 3.67503 3.98693 4.09852 4.59785 4.66309 4.77404 4.82156 4.89220 5.06015 5.13320 5.23495 5.25705 5.53959 5.64208 5.68921 5.82945 5.84881 5.91126 6.00821 6.10528 6.16319 6.17697 6.25182 6.55522 6.58046 6.61678 6.74778 6.90149 7.09910 7.34432 7.95513 8.02591 8.91329 10.26513 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025313 B = 0.005152 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.871645 B = 5434.002255 C = 5890.838282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.008 7.008 11 O -1.007 7.007 12 N -1.133 6.133 13 C 0.168 3.832 14 C -0.099 4.099 15 C -0.036 4.036 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.157 4.157 22 C -0.169 4.169 23 H 0.290 0.710 24 H 0.402 0.598 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -13.218 3.608 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.999 6.999 11 O -0.997 6.997 12 N -0.887 5.887 13 C 0.041 3.959 14 C -0.101 4.101 15 C -0.036 4.036 16 C -0.137 4.137 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.195 4.195 22 C -0.206 4.206 23 H 0.101 0.899 24 H 0.233 0.767 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.109 -13.144 3.793 15.903 hybrid contribution 0.939 0.963 -0.368 1.394 sum 9.048 -12.181 3.425 15.555 Atomic orbital electron populations 1.69905 1.06788 1.30664 1.40149 1.24744 0.94447 1.00803 0.88542 0.86174 0.80142 0.80146 0.79129 1.19240 1.19996 1.18702 1.30576 1.06051 1.12000 1.66812 0.88044 1.00345 0.72079 0.73171 0.72805 1.93370 1.73103 1.87690 1.45690 1.93351 1.72887 1.87520 1.45934 1.55911 1.55729 1.50854 1.26226 1.20541 0.93138 0.92228 0.89957 1.20424 0.90195 0.94743 1.04724 1.19000 0.97015 0.93490 0.94109 1.21047 0.99563 0.93583 0.99469 1.21077 0.97819 0.98531 0.96602 1.21110 1.00148 0.98445 0.94947 1.21136 0.98659 0.93864 0.99922 1.21053 0.96641 0.98540 0.96124 1.23067 0.94101 1.03498 0.98807 1.23079 1.02573 1.03223 0.91747 0.89928 0.76742 0.90263 0.91807 0.86029 0.86333 0.86407 0.86068 0.85650 0.88058 0.88678 0.88526 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.08 13.19 55.43 0.73 -24.35 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 7 C -1.02 -28.09 9.72 30.60 0.30 -27.80 16 8 H 0.10 2.53 7.81 -52.48 -0.41 2.12 16 9 S 2.72 72.65 5.02 -107.50 -0.54 72.11 16 10 O -1.01 -30.02 18.02 -57.17 -1.03 -31.05 16 11 O -1.01 -29.65 17.48 -57.17 -1.00 -30.65 16 12 N -1.13 -22.72 5.98 -10.61 -0.06 -22.78 16 13 C 0.17 2.88 6.04 -4.04 -0.02 2.86 16 14 C -0.10 -1.36 1.87 -155.66 -0.29 -1.65 16 15 C -0.04 -0.51 5.29 -104.62 -0.55 -1.06 16 16 C -0.12 -1.52 9.32 -39.58 -0.37 -1.89 16 17 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 18 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 19 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 20 C -0.11 -1.50 9.26 -39.58 -0.37 -1.87 16 21 C -0.16 -1.72 9.88 -26.74 -0.26 -1.98 16 22 C -0.17 -1.93 9.38 -26.73 -0.25 -2.18 16 23 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.40 7.19 8.55 -34.47 -0.29 6.90 16 25 H 0.08 1.44 6.67 -51.93 -0.35 1.09 16 26 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 27 H 0.12 1.34 6.32 -52.49 -0.33 1.01 16 28 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.72 7.40 -52.49 -0.39 1.33 16 32 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.96 6.47 -51.93 -0.34 0.63 16 35 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -35.47 314.96 -9.48 -44.95 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.19 Total: 9.06 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: -3.11 Total: -37.60 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.67 Total: -47.13 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.03 Total: -61.70 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 72.65 SS G_CDS: -0.54 Total: 72.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.47 -9.48 -44.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.548 kcal (2) G-P(sol) polarization free energy of solvation -35.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds