Wall clock time and date at job start Tue Mar 31 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12392 * 1 3 3 N 1.12402 * 179.97438 * 2 1 4 4 C 1.32508 * 119.99768 * 180.86670 * 3 2 1 5 5 C 1.41842 * 120.33732 * 0.02562 * 4 3 2 6 6 C 1.36340 * 119.63591 * 180.02562 * 5 4 3 7 7 C 1.38949 * 120.35303 * 0.02562 * 6 5 4 8 8 C 1.38907 * 120.69534 * 0.02562 * 7 6 5 9 9 C 1.36375 * 120.35147 * 359.66364 * 8 7 6 10 10 C 1.50704 * 120.17944 * 180.30174 * 9 8 7 11 11 O 1.42898 * 109.47342 * 0.33287 * 10 9 8 12 12 C 1.42898 * 114.00058 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.47382 * 29.99702 * 12 11 10 14 14 C 1.50695 * 109.47250 * 149.99841 * 12 11 10 15 15 H 1.08007 * 120.00318 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00465 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99468 * 359.97438 * 16 14 12 18 18 Si 1.86792 * 120.00491 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47210 * 60.00228 * 18 16 14 20 20 H 1.48504 * 109.47293 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47306 * 300.00026 * 18 16 14 22 22 C 1.53006 * 109.46747 * 269.99415 * 12 11 10 23 23 Cl 1.80302 * 109.46783 * 65.00311 * 22 12 11 24 24 H 1.07999 * 120.17950 * 359.97438 * 5 4 3 25 25 H 1.08003 * 119.82090 * 179.97438 * 6 5 4 26 26 H 1.07991 * 119.64935 * 179.97438 * 7 6 5 27 27 H 1.08003 * 119.81904 * 179.97438 * 8 7 6 28 28 H 1.09001 * 109.46803 * 120.32781 * 10 9 8 29 29 H 1.08996 * 109.47454 * 240.32876 * 10 9 8 30 30 H 0.97003 * 120.00177 * 179.97438 * 17 16 14 31 31 H 1.09001 * 109.46653 * 185.00076 * 22 12 11 32 32 H 1.08993 * 109.47328 * 305.00160 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1239 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9099 1.1482 0.0174 5 6 2.2074 2.3803 0.0365 6 6 2.9029 3.5528 0.0537 7 6 4.2924 3.5451 0.0520 8 6 4.9947 2.3468 0.0322 9 6 4.3279 1.1573 0.0211 10 6 5.0939 -0.1405 0.0066 11 8 6.4963 0.1339 0.0149 12 6 7.3174 -1.0355 0.0016 13 1 6.7996 -1.8372 -0.5248 14 6 8.6154 -0.7300 -0.7004 15 1 8.7951 0.2584 -1.0972 16 6 9.5736 -1.7120 -0.8362 17 7 9.3550 -2.9153 -0.3526 18 14 11.1822 -1.3335 -1.7071 19 1 11.8877 -0.2407 -0.9907 20 1 12.0356 -2.5487 -1.7208 21 1 10.9019 -0.9103 -3.1026 22 6 7.6058 -1.4724 1.4394 23 17 6.0682 -1.9782 2.2336 24 1 1.1274 2.3895 0.0367 25 1 2.3710 4.4927 0.0680 26 1 4.8318 4.4805 0.0653 27 1 6.0747 2.3573 0.0307 28 1 4.8331 -0.7262 0.8881 29 1 4.8390 -0.7028 -0.8917 30 1 10.0289 -3.6064 -0.4484 31 1 8.3034 -2.3099 1.4315 32 1 8.0432 -0.6404 1.9911 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223686830.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:52 Heat of formation + Delta-G solvation = 84.523127 kcal Electronic energy + Delta-G solvation = -19039.846316 eV Core-core repulsion = 15836.772847 eV Total energy + Delta-G solvation = -3203.073469 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.58474 -39.30648 -37.19864 -36.60134 -34.73608 -33.41493 -31.77820 -30.51815 -28.99786 -25.79645 -25.17306 -24.31418 -21.53885 -20.84351 -19.57945 -18.42456 -18.07141 -16.81931 -16.39797 -15.86543 -15.68788 -14.87291 -14.76215 -14.18849 -14.03388 -13.82663 -13.04528 -13.02338 -12.45203 -12.04355 -11.82843 -11.42226 -11.33315 -11.05670 -11.03442 -10.77568 -10.60748 -10.40675 -10.34672 -9.84673 -9.43275 -9.34918 -8.93511 -8.61183 -8.17093 -7.69149 -6.33018 -4.39548 0.66426 1.15518 1.44758 2.57243 2.75270 3.18895 3.24952 3.27196 3.47599 3.85097 4.14659 4.42879 4.72236 4.95054 5.04540 5.15157 5.28114 5.53319 5.55410 5.99771 6.09427 6.16328 6.22787 6.31060 6.36828 6.50967 6.58575 6.71427 6.92760 6.99362 7.30090 7.62356 7.93296 8.32617 8.77006 9.28248 9.31009 10.74073 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.020288 B = 0.004809 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.804600 B = 5820.619479 C = 6539.678102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 N 0.277 4.723 3 N -0.305 5.305 4 C 0.091 3.909 5 C -0.179 4.179 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.074 4.074 9 C -0.035 4.035 10 C 0.090 3.910 11 O -0.386 6.386 12 C 0.217 3.783 13 H 0.033 0.967 14 C -0.515 4.515 15 H 0.073 0.927 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.912 3.088 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.032 4.032 23 Cl -0.250 7.250 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.126 0.874 27 H 0.150 0.850 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 8.521 1.372 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 N 0.283 4.717 3 N -0.204 5.204 4 C -0.012 4.012 5 C -0.204 4.204 6 C -0.119 4.119 7 C -0.144 4.144 8 C -0.093 4.093 9 C -0.041 4.041 10 C 0.013 3.987 11 O -0.306 6.306 12 C 0.160 3.840 13 H 0.051 0.949 14 C -0.553 4.553 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.094 4.094 23 Cl -0.224 7.224 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.144 0.856 27 H 0.168 0.832 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.497 7.830 1.439 13.174 hybrid contribution 0.665 0.261 -0.322 0.783 sum -9.832 8.091 1.117 12.782 Atomic orbital electron populations 1.87593 0.88522 0.98970 1.39476 1.41252 1.01511 1.16206 1.12775 1.65191 0.88270 1.24937 1.41952 1.18263 0.93073 0.84503 1.05366 1.21447 0.98957 0.92588 1.07370 1.20557 0.94450 0.97146 0.99790 1.21560 0.93787 0.98482 1.00617 1.20902 1.01877 0.90458 0.96037 1.19716 0.88943 0.96862 0.98594 1.21399 0.83133 0.92082 1.02073 1.87757 1.13691 1.34051 1.95092 1.19988 0.90326 0.83766 0.89920 0.94901 1.21027 0.99462 0.98661 1.36144 0.90859 1.24991 0.99142 0.94626 0.95387 1.69802 1.35495 1.02527 1.45056 0.86315 0.81892 0.77805 0.80117 1.19871 1.21039 1.19870 1.25902 0.84124 1.03380 0.96032 1.98606 1.45634 1.93435 1.84759 0.86647 0.85819 0.85577 0.83224 0.89742 0.92452 0.92011 0.85436 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.16 -1.89 20.42 60.35 1.23 -0.66 16 2 N 0.28 3.69 9.06 60.35 0.55 4.23 16 3 N -0.31 -4.57 10.42 32.29 0.34 -4.23 16 4 C 0.09 1.36 6.64 -84.83 -0.56 0.80 16 5 C -0.18 -2.28 9.44 -38.89 -0.37 -2.65 16 6 C -0.10 -1.15 9.98 -40.00 -0.40 -1.55 16 7 C -0.12 -1.51 10.06 -39.07 -0.39 -1.90 16 8 C -0.07 -1.12 9.33 -40.01 -0.37 -1.49 16 9 C -0.04 -0.59 5.94 -103.93 -0.62 -1.21 16 10 C 0.09 1.72 5.42 36.01 0.20 1.91 16 11 O -0.39 -8.40 8.42 -35.23 -0.30 -8.69 16 12 C 0.22 5.20 2.38 -27.88 -0.07 5.14 16 13 H 0.03 0.86 7.79 -51.93 -0.40 0.46 16 14 C -0.51 -13.27 8.89 -34.44 -0.31 -13.58 16 15 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 16 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 17 N -0.89 -23.41 11.29 55.43 0.63 -22.78 16 18 Si 0.91 19.89 29.54 -169.99 -5.02 14.87 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.03 -0.72 6.17 37.16 0.23 -0.49 16 23 Cl -0.25 -5.12 26.09 -51.86 -1.35 -6.48 16 24 H 0.12 1.28 7.36 -52.49 -0.39 0.90 16 25 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 26 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.15 2.37 6.97 -52.48 -0.37 2.01 16 28 H 0.09 1.66 5.09 -51.93 -0.26 1.39 16 29 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.13 3.13 5.95 -51.93 -0.31 2.83 16 32 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 297.71 15.07 4.49 4.49 Total: -1.00 -25.70 297.71 -5.16 -30.86 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.96 Total: 1.96 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.76 Total: -13.56 kcal Atomic # 7 Polarization: -26.19 SS G_CDS: 2.74 Total: -23.44 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.30 Total: -8.69 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 17 Polarization: -5.12 SS G_CDS: -1.35 Total: -6.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -25.70 -5.16 -30.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223686830.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.386 kcal (2) G-P(sol) polarization free energy of solvation -25.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds