Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47329 * 240.00313 * 3 2 1 5 5 H 1.48501 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47121 * 119.99855 * 3 2 1 7 7 C 1.37879 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00620 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99867 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46525 * 300.00321 * 9 7 2 11 11 C 1.53001 * 109.47154 * 59.99991 * 9 7 2 12 12 Cl 1.80299 * 109.47220 * 185.00274 * 11 9 7 13 13 O 1.42893 * 109.47285 * 180.02562 * 9 7 2 14 14 C 1.42899 * 114.00171 * 149.99664 * 13 9 7 15 15 N 1.46502 * 109.47247 * 180.02562 * 14 13 9 16 16 N 1.40278 * 126.75554 * 89.98110 * 15 14 13 17 17 N 1.28647 * 109.42924 * 180.02562 * 16 15 14 18 18 C 1.34792 * 110.31768 * 359.97438 * 17 16 15 19 19 C 1.40135 * 133.16246 * 180.02562 * 18 17 16 20 20 C 1.36409 * 119.80046 * 180.24977 * 19 18 17 21 21 C 1.38910 * 120.75122 * 359.41168 * 20 19 18 22 22 C 1.36667 * 120.58102 * 0.60046 * 21 20 19 23 23 C 1.37457 * 126.75479 * 270.01927 * 15 14 13 24 24 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46841 * 305.00251 * 11 9 7 26 26 H 1.08998 * 109.47237 * 65.00149 * 11 9 7 27 27 H 1.09000 * 109.47053 * 60.00176 * 14 13 9 28 28 H 1.09000 * 109.47085 * 300.00267 * 14 13 9 29 29 H 1.08002 * 120.09599 * 359.96440 * 19 18 17 30 30 H 1.07998 * 119.62411 * 179.71811 * 20 19 18 31 31 H 1.07995 * 119.70968 * 180.32197 * 21 20 19 32 32 H 1.07992 * 120.10099 * 179.67663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5800 -1.2495 12 17 -0.6396 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0005 14 6 1.6980 -4.7618 0.6522 15 7 2.7234 -5.8066 0.5949 16 7 3.7379 -6.0395 1.5353 17 7 4.4522 -7.0397 1.1552 18 6 3.9900 -7.5279 -0.0130 19 6 4.3960 -8.5857 -0.8377 20 6 3.7174 -8.8440 -1.9924 21 6 2.6179 -8.0773 -2.3569 22 6 2.2020 -7.0400 -1.5701 23 6 2.8811 -6.7510 -0.3913 24 1 -0.4850 0.8400 0.0004 25 1 -0.2765 -1.7043 -1.2949 26 1 1.0022 -2.6116 -2.1374 27 1 0.7947 -5.1109 0.1520 28 1 1.4712 -4.5325 1.6934 29 1 5.2464 -9.1916 -0.5620 30 1 4.0355 -9.6571 -2.6281 31 1 2.0898 -8.2999 -3.2722 32 1 1.3494 -6.4457 -1.8635 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223800430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = 56.830971 kcal Electronic energy + Delta-G solvation = -19319.759528 eV Core-core repulsion = 16115.485238 eV Total energy + Delta-G solvation = -3204.274291 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.86268 -37.76517 -37.41166 -35.08978 -34.08407 -33.06646 -30.49689 -30.06044 -29.21112 -26.06011 -25.35303 -23.77618 -22.44125 -21.26346 -20.92612 -17.74155 -17.58725 -16.60778 -16.36930 -15.51965 -15.31016 -14.95361 -14.69989 -14.35853 -13.94405 -13.47434 -12.90126 -12.36705 -12.23712 -12.18995 -12.03620 -11.79394 -11.70007 -11.35790 -11.21106 -11.03425 -10.76228 -10.63140 -10.55862 -10.29353 -9.67628 -9.58315 -8.79443 -8.75555 -8.52602 -8.29520 -6.48134 -4.55484 0.58950 1.39090 2.21227 2.40912 3.08075 3.17813 3.19755 3.24691 3.70821 4.06354 4.18506 4.66517 4.68567 4.79477 4.86807 4.93851 5.20707 5.23736 5.43052 5.52471 5.66521 5.94539 6.10789 6.16381 6.17259 6.33422 6.38432 6.54168 6.68122 6.83135 7.04343 7.46650 7.70406 7.99206 8.21276 8.59343 9.12923 10.58923 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.004972 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.249559 B = 5630.416139 C = 6323.739054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.075 0.925 9 C 0.224 3.776 10 H 0.038 0.962 11 C -0.033 4.033 12 Cl -0.252 7.252 13 O -0.397 6.397 14 C 0.291 3.709 15 N -0.377 5.377 16 N 0.003 4.997 17 N -0.230 5.230 18 C -0.023 4.023 19 C -0.041 4.041 20 C -0.138 4.138 21 C -0.077 4.077 22 C -0.110 4.110 23 C 0.097 3.903 24 H 0.273 0.727 25 H 0.135 0.865 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -12.707 -4.515 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.093 0.907 9 C 0.167 3.833 10 H 0.056 0.944 11 C -0.096 4.096 12 Cl -0.226 7.226 13 O -0.315 6.315 14 C 0.131 3.869 15 N -0.174 5.174 16 N 0.023 4.977 17 N -0.108 5.108 18 C -0.147 4.147 19 C -0.063 4.063 20 C -0.159 4.159 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.025 4.025 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.609 -12.076 -3.230 12.603 hybrid contribution -0.471 0.778 -0.853 1.247 sum 1.138 -11.298 -4.083 12.066 Atomic orbital electron populations 1.69773 1.05979 1.28223 1.48777 1.24988 0.95189 0.99855 0.93896 0.86232 0.79327 0.80948 0.79238 1.19760 1.20822 1.19673 1.20987 0.94340 0.87869 1.52441 0.90670 1.20108 0.86957 0.83432 0.92787 0.94427 1.26034 0.95126 0.85724 1.02680 1.98600 1.76091 1.49094 1.98862 1.87869 1.44756 1.21478 1.77410 1.22952 0.84086 0.80310 0.99516 1.50500 1.26010 1.24385 1.16496 1.81667 0.94477 1.09985 1.11580 1.74590 1.20202 1.05360 1.10683 1.19901 0.97502 1.01543 0.95759 1.20146 0.99273 0.94308 0.92573 1.20696 0.96835 1.01275 0.97100 1.20819 0.96195 0.93839 0.98983 1.20012 1.01392 0.99611 0.92206 1.19449 0.98056 0.92187 0.92788 0.91731 0.84764 0.90526 0.88131 0.89953 0.84764 0.84923 0.84749 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.63 11.29 55.43 0.63 -22.00 16 2 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 3 Si 0.92 19.82 29.54 -169.99 -5.02 14.80 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.52 -13.37 8.89 -34.44 -0.31 -13.67 16 8 H 0.08 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.22 5.24 2.38 -27.88 -0.07 5.17 16 10 H 0.04 0.92 7.79 -51.93 -0.40 0.52 16 11 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 12 Cl -0.25 -4.61 26.09 -51.86 -1.35 -5.96 16 13 O -0.40 -8.95 10.18 -35.23 -0.36 -9.31 16 14 C 0.29 5.55 6.92 59.85 0.41 5.97 16 15 N -0.38 -7.18 3.99 -63.49 -0.25 -7.43 16 16 N 0.00 0.07 13.73 60.35 0.83 0.89 16 17 N -0.23 -4.25 12.36 32.08 0.40 -3.85 16 18 C -0.02 -0.37 7.26 -84.97 -0.62 -0.99 16 19 C -0.04 -0.50 10.06 -39.53 -0.40 -0.90 16 20 C -0.14 -1.39 9.95 -39.99 -0.40 -1.79 16 21 C -0.08 -0.83 9.98 -39.90 -0.40 -1.23 16 22 C -0.11 -1.55 10.01 -39.84 -0.40 -1.95 16 23 C 0.10 1.65 6.94 -84.15 -0.58 1.07 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.13 3.12 5.95 -51.93 -0.31 2.81 16 26 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 27 H 0.10 1.79 5.09 -51.93 -0.26 1.52 16 28 H 0.08 1.51 8.08 -51.93 -0.42 1.09 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -27.54 295.74 -6.35 -33.89 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.06 Total: 1.80 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.62 Total: -7.29 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 1.60 Total: -32.39 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.36 Total: -9.31 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -4.61 SS G_CDS: -1.35 Total: -5.96 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.54 -6.35 -33.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223800430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.718 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds