Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47329 * 240.00313 * 3 2 1 5 5 H 1.48501 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47121 * 119.99855 * 3 2 1 7 7 C 1.37879 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00620 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99867 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46525 * 300.00321 * 9 7 2 11 11 C 1.53001 * 109.47154 * 59.99991 * 9 7 2 12 12 Cl 1.80299 * 109.47220 * 185.00274 * 11 9 7 13 13 O 1.42893 * 109.47285 * 180.02562 * 9 7 2 14 14 C 1.42899 * 114.00171 * 149.99664 * 13 9 7 15 15 N 1.46502 * 109.47247 * 180.02562 * 14 13 9 16 16 N 1.40278 * 126.75554 * 89.98110 * 15 14 13 17 17 N 1.28647 * 109.42924 * 180.02562 * 16 15 14 18 18 C 1.34792 * 110.31768 * 359.97438 * 17 16 15 19 19 C 1.40135 * 133.16246 * 180.02562 * 18 17 16 20 20 C 1.36409 * 119.80046 * 180.24977 * 19 18 17 21 21 C 1.38910 * 120.75122 * 359.41168 * 20 19 18 22 22 C 1.36667 * 120.58102 * 0.60046 * 21 20 19 23 23 C 1.37457 * 126.75479 * 270.01927 * 15 14 13 24 24 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46841 * 305.00251 * 11 9 7 26 26 H 1.08998 * 109.47237 * 65.00149 * 11 9 7 27 27 H 1.09000 * 109.47053 * 60.00176 * 14 13 9 28 28 H 1.09000 * 109.47085 * 300.00267 * 14 13 9 29 29 H 1.08002 * 120.09599 * 359.96440 * 19 18 17 30 30 H 1.07998 * 119.62411 * 179.71811 * 20 19 18 31 31 H 1.07995 * 119.70968 * 180.32197 * 21 20 19 32 32 H 1.07992 * 120.10099 * 179.67663 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5800 -1.2495 12 17 -0.6396 -4.0714 -1.1772 13 8 2.1796 -3.5853 -0.0005 14 6 1.6980 -4.7618 0.6522 15 7 2.7234 -5.8066 0.5949 16 7 3.7379 -6.0395 1.5353 17 7 4.4522 -7.0397 1.1552 18 6 3.9900 -7.5279 -0.0130 19 6 4.3960 -8.5857 -0.8377 20 6 3.7174 -8.8440 -1.9924 21 6 2.6179 -8.0773 -2.3569 22 6 2.2020 -7.0400 -1.5701 23 6 2.8811 -6.7510 -0.3913 24 1 -0.4850 0.8400 0.0004 25 1 -0.2765 -1.7043 -1.2949 26 1 1.0022 -2.6116 -2.1374 27 1 0.7947 -5.1109 0.1520 28 1 1.4712 -4.5325 1.6934 29 1 5.2464 -9.1916 -0.5620 30 1 4.0355 -9.6571 -2.6281 31 1 2.0898 -8.2999 -3.2722 32 1 1.3494 -6.4457 -1.8635 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223800430.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = 39.338422 kcal Electronic energy + Delta-G solvation = -19320.518062 eV Core-core repulsion = 16115.485238 eV Total energy + Delta-G solvation = -3205.032825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.09886 -39.38552 -38.53783 -36.70634 -35.69263 -34.70735 -31.66918 -31.26197 -30.82647 -27.57249 -27.20051 -24.90684 -23.56962 -23.07608 -22.18728 -19.14611 -18.86300 -18.25077 -18.00853 -16.84705 -16.68198 -16.39719 -16.19660 -15.72158 -15.10825 -14.98898 -14.53288 -14.04286 -13.61338 -13.38291 -13.30465 -13.11502 -13.05546 -13.02177 -12.78689 -12.63364 -12.32124 -12.12082 -11.94472 -11.79977 -11.43472 -11.30892 -10.67191 -10.21850 -9.88941 -9.40441 -8.39678 -6.54874 -0.56016 0.34643 0.90076 1.17055 1.36247 1.41704 1.49646 1.53245 2.29431 2.69030 2.88696 2.97291 3.19531 3.37632 3.66335 3.86350 3.95420 4.24636 4.27311 4.31115 4.33178 4.41991 4.73123 4.76359 4.91853 5.10023 5.22980 5.37943 5.41519 5.44602 5.53032 5.81959 5.83893 6.21765 6.62673 6.89848 7.17453 8.66496 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.022607 B = 0.004972 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.249559 B = 5630.416139 C = 6323.739054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.229 3.771 10 H 0.020 0.980 11 C -0.022 4.022 12 Cl -0.222 7.222 13 O -0.415 6.415 14 C 0.295 3.705 15 N -0.392 5.392 16 N -0.043 5.043 17 N -0.238 5.238 18 C -0.046 4.046 19 C -0.045 4.045 20 C -0.118 4.118 21 C -0.049 4.049 22 C -0.139 4.139 23 C 0.076 3.924 24 H 0.277 0.723 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.207 -14.497 -6.741 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.075 0.925 9 C 0.172 3.828 10 H 0.038 0.962 11 C -0.085 4.085 12 Cl -0.196 7.196 13 O -0.334 6.334 14 C 0.135 3.865 15 N -0.190 5.190 16 N -0.022 5.022 17 N -0.116 5.116 18 C -0.172 4.172 19 C -0.067 4.067 20 C -0.139 4.139 21 C -0.071 4.071 22 C -0.161 4.161 23 C -0.044 4.044 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.096 0.904 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.178 0.822 30 H 0.200 0.800 31 H 0.194 0.806 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.690 -13.885 -5.445 15.010 hybrid contribution -0.506 1.089 -0.287 1.235 sum 1.184 -12.796 -5.732 14.071 Atomic orbital electron populations 1.69843 1.06791 1.29095 1.48502 1.25634 0.95945 1.02307 0.93140 0.85378 0.78343 0.77677 0.78998 1.19420 1.19639 1.19965 1.21161 0.93808 0.89688 1.53952 0.92454 1.19882 0.86820 0.83209 0.92871 0.96218 1.25543 0.94886 0.86515 1.01578 1.98593 1.75100 1.47107 1.98826 1.87821 1.45281 1.22375 1.77932 1.22937 0.84769 0.79476 0.99280 1.50420 1.26216 1.24878 1.17463 1.81606 0.95994 1.11619 1.12982 1.74475 1.20151 1.05155 1.11828 1.20482 0.97869 1.03028 0.95791 1.20637 1.00278 0.93202 0.92591 1.21287 0.95160 1.01316 0.96143 1.21414 0.95451 0.91264 0.98963 1.20251 1.02099 1.01604 0.92172 1.19991 0.99000 0.91973 0.93449 0.91342 0.86335 0.90388 0.86888 0.90152 0.82191 0.80034 0.80610 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.33 11.29 21.45 0.24 -46.09 16 2 C 0.03 1.60 5.29 84.65 0.45 2.05 16 3 Si 0.97 40.74 29.54 68.60 2.03 42.76 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -29.17 8.89 25.60 0.23 -28.94 16 8 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 9 C 0.23 11.09 2.38 29.85 0.07 11.16 16 10 H 0.02 1.02 7.79 -2.38 -0.02 1.00 16 11 C -0.02 -0.97 6.17 71.98 0.44 -0.53 16 12 Cl -0.22 -8.01 26.09 -2.72 -0.07 -8.08 16 13 O -0.42 -19.50 10.18 -148.98 -1.52 -21.01 16 14 C 0.30 11.75 6.92 127.77 0.88 12.64 16 15 N -0.39 -15.52 3.99 -455.25 -1.81 -17.34 16 16 N -0.04 -1.77 13.73 37.02 0.51 -1.27 16 17 N -0.24 -9.05 12.36 -52.43 -0.65 -9.70 16 18 C -0.05 -1.50 7.26 39.72 0.29 -1.21 16 19 C -0.05 -0.97 10.06 22.30 0.22 -0.74 16 20 C -0.12 -1.77 9.95 22.00 0.22 -1.55 16 21 C -0.05 -0.85 9.98 22.06 0.22 -0.63 16 22 C -0.14 -3.68 10.01 22.11 0.22 -3.46 16 23 C 0.08 2.61 6.94 39.03 0.27 2.88 16 24 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 25 H 0.12 5.57 5.95 -2.39 -0.01 5.56 16 26 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 27 H 0.11 4.11 5.09 -2.39 -0.01 4.10 16 28 H 0.08 3.15 8.08 -2.39 -0.02 3.13 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 31 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -62.41 295.74 3.40 -59.01 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.15 Total: 10.04 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 3.52 Total: -8.33 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.71 Total: -74.39 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.52 Total: -21.01 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 17 Polarization: -8.01 SS G_CDS: -0.07 Total: -8.08 kcal Total: -62.41 3.40 -59.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223800430.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.351 kcal (2) G-P(sol) polarization free energy of solvation -62.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds