Wall clock time and date at job start Tue Mar 31 2020 05:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48503 * 109.46716 * 239.99847 * 3 2 1 5 5 H 1.48501 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47182 * 120.00282 * 3 2 1 7 7 C 1.38644 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99738 * 179.97438 * 7 2 1 9 9 O 1.34924 * 120.00050 * 359.97438 * 7 2 1 10 10 C 1.42895 * 117.00220 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47176 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.46038 * 52.37927 * 11 10 9 13 13 C 1.54091 * 110.52014 * 175.00309 * 11 10 9 14 14 N 1.47093 * 103.77810 * 118.63639 * 13 11 10 15 15 C 1.39951 * 125.55910 * 179.97438 * 14 13 11 16 16 C 1.38899 * 120.05359 * 0.27370 * 15 14 13 17 17 C 1.38103 * 119.97692 * 180.23477 * 16 15 14 18 18 C 1.38271 * 120.09371 * 359.48690 * 17 16 15 19 19 C 1.38490 * 120.11353 * 0.25880 * 18 17 16 20 20 F 1.35097 * 119.99120 * 179.97438 * 19 18 17 21 21 C 1.38357 * 120.01951 * 359.97438 * 19 18 17 22 22 C 1.34008 * 108.88039 * 0.22637 * 14 13 11 23 23 O 1.21507 * 123.07134 * 179.74211 * 22 14 13 24 24 O 1.33787 * 113.85417 * 359.59340 * 22 14 13 25 25 H 0.96996 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46570 * 60.00914 * 10 9 7 27 27 H 1.08992 * 109.47482 * 300.00606 * 10 9 7 28 28 H 1.09001 * 110.56051 * 0.06212 * 13 11 10 29 29 H 1.08995 * 110.56297 * 237.20799 * 13 11 10 30 30 H 1.08000 * 120.01550 * 359.97438 * 16 15 14 31 31 H 1.08002 * 119.95579 * 179.77231 * 17 16 15 32 32 H 1.07995 * 119.94304 * 180.27764 * 18 17 16 33 33 H 1.07998 * 120.04483 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3345 -2.3692 0.0016 10 6 2.1127 -3.5676 0.0015 11 6 1.1807 -4.7810 0.0034 12 1 0.4533 -4.7040 -0.8047 13 6 1.9917 -6.0852 -0.1223 14 7 1.6839 -6.8102 1.1200 15 6 2.1886 -8.0662 1.4757 16 6 3.0631 -8.7307 0.6254 17 6 3.5563 -9.9722 0.9757 18 6 3.1893 -10.5503 2.1769 19 6 2.3218 -9.8887 3.0300 20 9 1.9644 -10.4561 4.2029 21 6 1.8210 -8.6469 2.6816 22 6 0.8372 -6.0745 1.8531 23 8 0.4095 -6.4341 2.9321 24 8 0.5082 -4.9064 1.2898 25 1 -0.4850 0.8400 -0.0004 26 1 2.7421 -3.5920 0.8912 27 1 2.7409 -3.5928 -0.8888 28 1 3.0581 -5.8683 -0.1850 29 1 1.6646 -6.6572 -0.9905 30 1 3.3539 -8.2787 -0.3114 31 1 4.2333 -10.4902 0.3126 32 1 3.5800 -11.5192 2.4505 33 1 1.1448 -8.1305 3.3467 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224379370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:31 Heat of formation + Delta-G solvation = -107.446192 kcal Electronic energy + Delta-G solvation = -21198.593705 eV Core-core repulsion = 17526.566696 eV Total energy + Delta-G solvation = -3672.027009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.04245 -41.95243 -39.19268 -37.52138 -36.18485 -35.52630 -32.12497 -31.27636 -30.67612 -29.74547 -26.08453 -24.24884 -24.10461 -22.92189 -21.86353 -20.99430 -18.50464 -17.76258 -17.30742 -17.03797 -16.67873 -16.34603 -15.90866 -15.74378 -15.33769 -14.95186 -14.54310 -14.15496 -13.98700 -13.89366 -13.69457 -13.38585 -13.15263 -12.48956 -12.37404 -12.09325 -11.95912 -11.85707 -11.31454 -11.01282 -10.64783 -10.46511 -10.29023 -10.16483 -9.80023 -9.36110 -9.07874 -8.32333 -8.11033 -6.04293 -3.71321 0.86084 0.96541 2.13346 2.65160 3.26123 3.28447 3.32131 3.40664 3.42036 3.87822 4.02253 4.24306 4.33194 4.60867 4.73919 4.75351 4.87101 4.99903 5.08343 5.24206 5.28172 5.34566 5.44090 5.77229 5.92203 5.98099 5.98558 6.13416 6.17011 6.20949 6.27524 6.72780 7.29557 7.35183 7.87875 8.31424 9.37401 9.97049 11.15709 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.003382 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.289064 B = 8276.925904 C = 8583.692326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.028 3.972 3 Si 0.928 3.072 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.372 4.372 8 H 0.065 0.935 9 O -0.285 6.285 10 C 0.065 3.935 11 C 0.078 3.922 12 H 0.128 0.872 13 C 0.069 3.931 14 N -0.574 5.574 15 C 0.222 3.778 16 C -0.170 4.170 17 C -0.061 4.061 18 C -0.185 4.185 19 C 0.131 3.869 20 F -0.136 7.136 21 C -0.196 4.196 22 C 0.643 3.357 23 O -0.506 6.506 24 O -0.290 6.290 25 H 0.261 0.739 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -19.855 -2.222 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.172 4.172 3 Si 0.755 3.245 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.451 4.451 8 H 0.083 0.917 9 O -0.200 6.200 10 C -0.013 4.013 11 C 0.023 3.977 12 H 0.146 0.854 13 C -0.054 4.054 14 N -0.310 5.310 15 C 0.128 3.872 16 C -0.191 4.191 17 C -0.079 4.079 18 C -0.205 4.205 19 C 0.111 3.889 20 F -0.114 7.114 21 C -0.217 4.217 22 C 0.399 3.601 23 O -0.391 6.391 24 O -0.198 6.198 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.369 -19.622 -1.550 21.018 hybrid contribution 0.737 0.726 0.062 1.036 sum 8.106 -18.896 -1.488 20.615 Atomic orbital electron populations 1.70011 1.05464 1.26369 1.50592 1.24987 0.95700 0.97848 0.98630 0.86004 0.78554 0.81488 0.78459 1.20265 1.20739 1.20254 1.20714 0.90220 0.82237 1.51932 0.91749 1.85688 1.30852 1.10041 1.93457 1.22373 0.92040 0.87102 0.99808 1.24063 0.95345 0.94171 0.84157 0.85384 1.23058 1.02912 0.92239 0.87176 1.45540 1.46307 1.17757 1.21421 1.17077 0.93914 0.82756 0.93488 1.20808 1.00757 0.96729 1.00836 1.20741 0.97896 0.93896 0.95395 1.21101 1.01543 1.02075 0.95767 1.17412 0.96902 0.92029 0.82578 1.91513 1.90440 1.84336 1.45114 1.21549 1.05661 0.95974 0.98544 1.18736 0.77848 0.79616 0.83906 1.90899 1.57898 1.71355 1.18972 1.87588 1.64451 1.33371 1.34416 0.92905 0.94616 0.92960 0.87751 0.87656 0.84766 0.84403 0.84674 0.81275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.29 13.67 55.48 0.76 -26.53 16 2 C 0.03 0.80 5.49 -17.51 -0.10 0.71 16 3 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.37 -10.55 9.89 30.88 0.31 -10.25 16 8 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 9 O -0.29 -7.78 9.78 -16.49 -0.16 -7.94 16 10 C 0.06 1.25 5.56 37.16 0.21 1.46 16 11 C 0.08 1.22 4.15 -26.16 -0.11 1.11 16 12 H 0.13 1.84 8.14 -51.93 -0.42 1.41 16 13 C 0.07 0.73 6.13 -3.15 -0.02 0.71 16 14 N -0.57 -7.85 3.16 -118.28 -0.37 -8.22 16 15 C 0.22 2.76 6.63 -83.70 -0.56 2.20 16 16 C -0.17 -1.53 9.49 -39.39 -0.37 -1.90 16 17 C -0.06 -0.47 10.04 -39.62 -0.40 -0.86 16 18 C -0.18 -1.68 10.02 -39.48 -0.40 -2.07 16 19 C 0.13 1.56 7.30 -39.44 -0.29 1.28 16 20 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.20 -2.70 9.29 -39.33 -0.37 -3.06 16 22 C 0.64 11.55 8.77 53.71 0.47 12.02 16 23 O -0.51 -10.30 14.74 -19.11 -0.28 -10.59 16 24 O -0.29 -5.71 10.80 -38.50 -0.42 -6.13 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 0.89 7.73 -51.93 -0.40 0.49 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.13 0.87 7.31 -52.49 -0.38 0.48 16 31 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.17 2.74 5.24 -52.49 -0.28 2.47 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -35.67 298.10 -5.72 -41.39 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -3.14 Total: -2.60 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.62 Total: 1.33 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.38 Total: -34.75 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.86 Total: -24.66 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.67 -5.72 -41.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.055 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds