Wall clock time and date at job start Tue Mar 31 2020 05:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39680 * 119.81804 * 2 1 4 4 C 1.36536 * 119.38890 * 179.97438 * 3 2 1 5 5 O 1.35281 * 120.50023 * 180.02562 * 4 3 2 6 6 C 1.42901 * 116.99691 * 174.79704 * 5 4 3 7 7 H 1.08998 * 109.47597 * 30.35972 * 6 5 4 8 8 C 1.50703 * 109.46593 * 150.35646 * 6 5 4 9 9 H 1.08003 * 120.00371 * 0.02562 * 8 6 5 10 10 C 1.37881 * 119.99978 * 180.02562 * 8 6 5 11 11 N 1.31507 * 120.00009 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99778 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47217 * 60.00219 * 12 10 8 14 14 H 1.48506 * 109.46709 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47370 * 299.99839 * 12 10 8 16 16 C 1.52991 * 109.47423 * 270.35090 * 6 5 4 17 17 Cl 1.80302 * 109.46931 * 65.00623 * 16 6 5 18 18 N 1.36819 * 119.00049 * 0.02562 * 4 3 2 19 19 N 1.39925 * 132.58370 * 180.02562 * 18 4 3 20 20 C 1.31327 * 108.83774 * 179.97438 * 19 18 4 21 21 C 1.38773 * 108.96921 * 0.02562 * 20 19 18 22 22 C 1.37103 * 119.73527 * 359.97438 * 18 4 3 23 23 N 1.31428 * 119.82338 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47289 * 90.00275 * 1 2 3 25 25 H 1.09004 * 109.47365 * 209.99879 * 1 2 3 26 26 H 1.09003 * 109.47533 * 330.00140 * 1 2 3 27 27 H 1.07993 * 120.30641 * 359.97438 * 3 2 1 28 28 H 0.96999 * 120.00224 * 180.02562 * 11 10 8 29 29 H 1.09000 * 109.47211 * 185.00237 * 16 6 5 30 30 H 1.09000 * 109.47800 * 305.00867 * 16 6 5 31 31 H 1.07998 * 125.51520 * 180.02562 * 20 19 18 32 32 H 1.08006 * 126.18178 * 180.26725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.2119 0.0000 4 6 3.5668 1.2016 0.0005 5 8 4.2622 2.3621 0.0011 6 6 5.6833 2.2668 0.1171 7 1 6.0230 1.3347 -0.3344 8 6 6.3243 3.4315 -0.5926 9 1 5.7082 4.1708 -1.0827 10 6 7.6975 3.5533 -0.6161 11 7 8.4479 2.6529 -0.0197 12 14 8.4921 4.9967 -1.4963 13 1 8.0298 6.2669 -0.8814 14 1 9.9690 4.8978 -1.3757 15 1 8.1095 4.9732 -2.9309 16 6 6.0771 2.2908 1.5952 17 17 5.4321 0.8191 2.4130 18 7 4.2212 0.0001 0.0005 19 7 5.5788 -0.3387 0.0014 20 6 5.6893 -1.6473 0.0015 21 6 4.4195 -2.2072 0.0001 22 6 3.5009 -1.1665 0.0005 23 7 2.1606 -1.1402 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6636 2.1483 -0.0004 28 1 9.4139 2.7388 -0.0359 29 1 7.1635 2.3078 1.6815 30 1 5.6611 3.1807 2.0677 31 1 6.6180 -2.1986 0.0025 32 1 4.1878 -3.2621 0.0038 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225468166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:14 Heat of formation + Delta-G solvation = 81.035287 kcal Electronic energy + Delta-G solvation = -20258.121032 eV Core-core repulsion = 17054.896319 eV Total energy + Delta-G solvation = -3203.224713 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.85818 -38.53827 -37.62084 -34.94643 -33.70557 -32.45356 -31.58436 -29.96355 -28.37321 -27.62310 -25.41561 -23.30733 -22.52877 -21.16871 -20.91748 -17.96676 -16.89728 -16.47447 -16.44081 -15.92945 -15.05965 -14.44303 -14.11830 -14.01547 -13.62207 -13.51761 -13.05458 -12.90152 -12.42725 -12.24098 -12.12488 -11.91720 -11.61019 -11.25471 -11.18353 -11.03070 -10.65527 -10.37463 -10.05961 -9.70787 -9.49141 -9.17797 -9.00677 -8.72971 -8.50521 -7.13667 -6.45777 -4.55201 1.19209 1.49045 2.50512 3.10434 3.15916 3.17825 3.23031 3.35438 3.56362 3.90034 4.16833 4.21685 4.74631 4.89568 5.21859 5.32824 5.51621 5.59688 5.69684 5.86207 5.94820 6.06593 6.16070 6.20478 6.26564 6.49286 6.57939 6.92768 6.96602 7.36970 7.41548 7.65067 7.79945 8.18740 8.20544 8.55821 9.10079 10.60315 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.006588 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.371144 B = 4248.880115 C = 4659.989415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.232 3.768 3 C -0.311 4.311 4 C 0.436 3.564 5 O -0.290 6.290 6 C 0.171 3.829 7 H 0.119 0.881 8 C -0.531 4.531 9 H 0.074 0.926 10 C 0.068 3.932 11 N -0.879 5.879 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.029 4.029 17 Cl -0.237 7.237 18 N -0.340 5.340 19 N -0.266 5.266 20 C 0.081 3.919 21 C -0.288 4.288 22 C 0.286 3.714 23 N -0.514 5.514 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.273 0.727 29 H 0.137 0.863 30 H 0.068 0.932 31 H 0.188 0.812 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -4.247 0.683 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.072 3.928 3 C -0.337 4.337 4 C 0.274 3.726 5 O -0.194 6.194 6 C 0.118 3.882 7 H 0.136 0.864 8 C -0.568 4.568 9 H 0.093 0.907 10 C -0.137 4.137 11 N -0.515 5.515 12 Si 0.744 3.256 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.092 4.092 17 Cl -0.212 7.212 18 N -0.124 5.124 19 N -0.087 5.087 20 C -0.100 4.100 21 C -0.319 4.319 22 C 0.060 3.940 23 N -0.233 5.233 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.178 0.822 28 H 0.083 0.917 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.205 0.795 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.246 -3.882 0.777 9.147 hybrid contribution 0.764 0.684 -0.169 1.039 sum -7.483 -3.198 0.608 8.160 Atomic orbital electron populations 1.20712 0.87621 1.03841 1.03516 1.21371 0.97059 0.86843 0.87492 1.20502 0.88427 1.01393 1.23417 1.19940 0.89692 0.77035 0.85955 1.86199 1.26647 1.23419 1.83116 1.21910 0.69657 1.04207 0.92431 0.86415 1.20896 0.91528 1.09152 1.35272 0.90748 1.24938 0.96484 0.97069 0.95185 1.69818 1.06063 1.33835 1.41767 0.86224 0.77972 0.81375 0.80076 1.19749 1.20711 1.19721 1.25613 1.04965 0.83945 0.94670 1.98642 1.89606 1.49555 1.83370 1.47883 1.07997 1.05920 1.50566 1.78072 0.88243 1.14241 1.28141 1.23912 0.98513 0.91847 0.95701 1.20723 0.89694 0.97946 1.23510 1.20584 0.87914 0.86231 0.99272 1.68020 1.03892 1.28267 1.23116 0.89699 0.90081 0.90051 0.82197 0.91705 0.84520 0.91314 0.79487 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.19 36.00 0.37 -0.65 16 2 C 0.23 3.62 6.82 -82.23 -0.56 3.06 16 3 C -0.31 -5.29 9.65 -39.66 -0.38 -5.67 16 4 C 0.44 9.11 6.50 -15.94 -0.10 9.00 16 5 O -0.29 -6.71 9.73 -17.54 -0.17 -6.88 16 6 C 0.17 4.26 2.18 -27.89 -0.06 4.20 16 7 H 0.12 3.12 4.42 -62.37 -0.28 2.84 16 8 C -0.53 -13.92 8.89 -34.44 -0.31 -14.23 16 9 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 10 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 11 N -0.88 -23.01 11.30 55.43 0.63 -22.39 16 12 Si 0.92 19.88 29.54 -169.99 -5.02 14.86 16 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 C -0.03 -0.69 6.17 37.15 0.23 -0.46 16 17 Cl -0.24 -5.23 24.43 -51.86 -1.27 -6.49 16 18 N -0.34 -7.22 2.70 -12.30 -0.03 -7.25 16 19 N -0.27 -5.79 6.62 30.48 0.20 -5.59 16 20 C 0.08 1.47 11.94 -17.57 -0.21 1.26 16 21 C -0.29 -5.09 10.92 -39.17 -0.43 -5.52 16 22 C 0.29 5.65 7.92 -155.52 -1.23 4.42 16 23 N -0.51 -9.29 10.40 -8.56 -0.09 -9.38 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.14 3.46 5.96 -51.93 -0.31 3.15 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.19 2.67 8.06 -52.49 -0.42 2.25 16 32 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -29.06 285.68 -7.32 -36.38 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.09 Total: 5.40 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.78 Total: -2.95 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.71 Total: -44.61 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.17 Total: -6.88 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -1.27 Total: -6.49 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.06 -7.32 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225468166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.411 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds