Wall clock time and date at job start Tue Mar 31 2020 05:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39680 * 119.81804 * 2 1 4 4 C 1.36536 * 119.38890 * 179.97438 * 3 2 1 5 5 O 1.35281 * 120.50023 * 180.02562 * 4 3 2 6 6 C 1.42901 * 116.99691 * 174.79704 * 5 4 3 7 7 H 1.08998 * 109.47597 * 30.35972 * 6 5 4 8 8 C 1.50703 * 109.46593 * 150.35646 * 6 5 4 9 9 H 1.08003 * 120.00371 * 0.02562 * 8 6 5 10 10 C 1.37881 * 119.99978 * 180.02562 * 8 6 5 11 11 N 1.31507 * 120.00009 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99778 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47217 * 60.00219 * 12 10 8 14 14 H 1.48506 * 109.46709 * 179.97438 * 12 10 8 15 15 H 1.48493 * 109.47370 * 299.99839 * 12 10 8 16 16 C 1.52991 * 109.47423 * 270.35090 * 6 5 4 17 17 Cl 1.80302 * 109.46931 * 65.00623 * 16 6 5 18 18 N 1.36819 * 119.00049 * 0.02562 * 4 3 2 19 19 N 1.39925 * 132.58370 * 180.02562 * 18 4 3 20 20 C 1.31327 * 108.83774 * 179.97438 * 19 18 4 21 21 C 1.38773 * 108.96921 * 0.02562 * 20 19 18 22 22 C 1.37103 * 119.73527 * 359.97438 * 18 4 3 23 23 N 1.31428 * 119.82338 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47289 * 90.00275 * 1 2 3 25 25 H 1.09004 * 109.47365 * 209.99879 * 1 2 3 26 26 H 1.09003 * 109.47533 * 330.00140 * 1 2 3 27 27 H 1.07993 * 120.30641 * 359.97438 * 3 2 1 28 28 H 0.96999 * 120.00224 * 180.02562 * 11 10 8 29 29 H 1.09000 * 109.47211 * 185.00237 * 16 6 5 30 30 H 1.09000 * 109.47800 * 305.00867 * 16 6 5 31 31 H 1.07998 * 125.51520 * 180.02562 * 20 19 18 32 32 H 1.08006 * 126.18178 * 180.26725 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.2119 0.0000 4 6 3.5668 1.2016 0.0005 5 8 4.2622 2.3621 0.0011 6 6 5.6833 2.2668 0.1171 7 1 6.0230 1.3347 -0.3344 8 6 6.3243 3.4315 -0.5926 9 1 5.7082 4.1708 -1.0827 10 6 7.6975 3.5533 -0.6161 11 7 8.4479 2.6529 -0.0197 12 14 8.4921 4.9967 -1.4963 13 1 8.0298 6.2669 -0.8814 14 1 9.9690 4.8978 -1.3757 15 1 8.1095 4.9732 -2.9309 16 6 6.0771 2.2908 1.5952 17 17 5.4321 0.8191 2.4130 18 7 4.2212 0.0001 0.0005 19 7 5.5788 -0.3387 0.0014 20 6 5.6893 -1.6473 0.0015 21 6 4.4195 -2.2072 0.0001 22 6 3.5009 -1.1665 0.0005 23 7 2.1606 -1.1402 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6636 2.1483 -0.0004 28 1 9.4139 2.7388 -0.0359 29 1 7.1635 2.3078 1.6815 30 1 5.6611 3.1807 2.0677 31 1 6.6180 -2.1986 0.0025 32 1 4.1878 -3.2621 0.0038 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225468166.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:13 Heat of formation + Delta-G solvation = 64.498798 kcal Electronic energy + Delta-G solvation = -20258.838108 eV Core-core repulsion = 17054.896319 eV Total energy + Delta-G solvation = -3203.941789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.29505 -40.15313 -38.99097 -36.73251 -35.55522 -33.94783 -32.86703 -31.68744 -29.86124 -28.83367 -27.35689 -24.74137 -24.07979 -22.72996 -22.35921 -19.56942 -18.63506 -18.01381 -17.88286 -17.48143 -16.85431 -15.98671 -15.60438 -15.46631 -15.24320 -14.67479 -14.50048 -14.39914 -13.96445 -13.87165 -13.44724 -13.22343 -13.07572 -12.95203 -12.79322 -12.50786 -12.37724 -12.02450 -11.68311 -11.34594 -11.22666 -10.85829 -10.66593 -10.33622 -10.15091 -8.58486 -8.38490 -6.55862 -0.18717 0.07043 1.08255 1.37148 1.39739 1.49343 1.54009 1.81733 1.95419 2.37896 2.53686 2.94219 2.99189 3.39784 3.95334 4.06492 4.23432 4.26929 4.35149 4.51282 4.66180 4.75645 4.87214 4.92250 4.96302 5.06695 5.14403 5.39842 5.44178 5.60821 5.71077 5.81996 6.13213 6.48785 6.77835 6.82559 7.13240 8.67116 Molecular weight = 281.07amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.006588 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.371144 B = 4248.880115 C = 4659.989415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.235 3.765 3 C -0.294 4.294 4 C 0.392 3.608 5 O -0.307 6.307 6 C 0.175 3.825 7 H 0.104 0.896 8 C -0.558 4.558 9 H 0.067 0.933 10 C 0.029 3.971 11 N -0.900 5.900 12 Si 0.979 3.021 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.271 1.271 16 C -0.018 4.018 17 Cl -0.223 7.223 18 N -0.349 5.349 19 N -0.313 5.313 20 C 0.080 3.920 21 C -0.285 4.285 22 C 0.263 3.737 23 N -0.522 5.522 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.190 0.810 28 H 0.275 0.725 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.219 0.781 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -4.436 0.487 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 C -0.319 4.319 4 C 0.231 3.769 5 O -0.212 6.212 6 C 0.120 3.880 7 H 0.121 0.879 8 C -0.595 4.595 9 H 0.085 0.915 10 C -0.173 4.173 11 N -0.536 5.536 12 Si 0.802 3.198 13 H -0.190 1.190 14 H -0.199 1.199 15 H -0.196 1.196 16 C -0.081 4.081 17 Cl -0.197 7.197 18 N -0.133 5.133 19 N -0.135 5.135 20 C -0.099 4.099 21 C -0.316 4.316 22 C 0.037 3.963 23 N -0.242 5.242 24 H 0.125 0.875 25 H 0.108 0.892 26 H 0.127 0.873 27 H 0.207 0.793 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.235 0.765 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.815 -4.097 0.589 10.652 hybrid contribution 1.072 0.621 -0.096 1.242 sum -8.744 -3.476 0.493 9.422 Atomic orbital electron populations 1.20925 0.83279 1.05638 1.05388 1.22275 0.99504 0.85519 0.85238 1.21114 0.87124 1.03402 1.20285 1.20482 0.90745 0.76625 0.89009 1.86107 1.25668 1.24955 1.84487 1.21632 0.70789 1.03013 0.92533 0.87894 1.21164 0.92289 1.09811 1.36236 0.91511 1.25711 0.96669 0.99355 0.95585 1.69920 1.06280 1.35124 1.42315 0.85280 0.77226 0.78470 0.78800 1.19029 1.19948 1.19632 1.25279 1.03649 0.84559 0.94657 1.98631 1.89381 1.48743 1.82958 1.47913 1.07957 1.06294 1.51101 1.77953 0.89219 1.16084 1.30291 1.24471 1.00058 0.91043 0.94362 1.21124 0.89108 0.98919 1.22469 1.21152 0.88906 0.86366 0.99891 1.68145 1.03100 1.29356 1.23557 0.87462 0.89214 0.87337 0.79299 0.91508 0.86449 0.91261 0.76487 0.80305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.19 71.23 0.73 -0.83 16 2 C 0.23 6.73 6.82 42.97 0.29 7.02 16 3 C -0.29 -9.50 9.65 22.22 0.21 -9.28 16 4 C 0.39 16.40 6.50 83.52 0.54 16.94 16 5 O -0.31 -14.50 9.73 -85.66 -0.83 -15.34 16 6 C 0.17 8.93 2.18 29.85 0.06 8.99 16 7 H 0.10 5.66 4.42 -16.04 -0.07 5.59 16 8 C -0.56 -29.99 8.89 25.60 0.23 -29.76 16 9 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 10 C 0.03 1.50 5.29 84.66 0.45 1.95 16 11 N -0.90 -47.99 11.30 21.45 0.24 -47.75 16 12 Si 0.98 40.85 29.54 68.60 2.03 42.88 16 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 14 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 16 C -0.02 -0.90 6.17 71.98 0.44 -0.45 16 17 Cl -0.22 -9.91 24.43 -2.72 -0.07 -9.98 16 18 N -0.35 -14.92 2.70 -303.49 -0.82 -15.74 16 19 N -0.31 -13.87 6.62 -57.48 -0.38 -14.25 16 20 C 0.08 2.88 11.94 84.90 1.01 3.89 16 21 C -0.29 -9.81 10.92 22.54 0.25 -9.56 16 22 C 0.26 10.19 7.92 133.12 1.05 11.24 16 23 N -0.52 -18.00 10.40 -181.01 -1.88 -19.88 16 24 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.11 1.23 8.09 -2.39 -0.02 1.21 16 27 H 0.19 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.12 6.14 5.96 -2.39 -0.01 6.13 16 30 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.22 6.01 8.06 -2.91 -0.02 5.98 16 32 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -64.25 285.68 4.65 -59.60 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.09 Total: 20.30 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.27 Total: 0.16 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -2.84 Total: -97.62 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.83 Total: -15.34 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 17 Polarization: -9.91 SS G_CDS: -0.07 Total: -9.98 kcal Total: -64.25 4.65 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225468166.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.096 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds