Wall clock time and date at job start Tue Mar 31 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35845 * 116.99960 * 2 1 4 4 C 1.38797 * 119.92520 * 0.02562 * 3 2 1 5 5 C 1.37820 * 120.15514 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.99473 * 359.97438 * 5 4 3 7 7 C 1.43205 * 120.07592 * 180.02562 * 6 5 4 8 8 N 6.70052 * 116.93234 * 0.02562 * 2 1 3 9 9 C 1.39745 * 119.85102 * 0.02562 * 6 5 4 10 10 C 1.38169 * 119.84286 * 359.72576 * 9 6 5 11 11 O 1.35991 * 120.00139 * 180.29298 * 10 9 6 12 12 C 1.42898 * 116.99902 * 356.71416 * 11 10 9 13 13 H 1.09004 * 109.47453 * 26.96778 * 12 11 10 14 14 C 1.50707 * 109.47424 * 146.97021 * 12 11 10 15 15 H 1.08000 * 119.99406 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00218 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00078 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00055 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46805 * 59.99755 * 18 16 14 20 20 H 1.48496 * 109.47121 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47343 * 300.00354 * 18 16 14 22 22 C 1.53005 * 109.47367 * 266.96569 * 12 11 10 23 23 Cl 1.80301 * 109.46583 * 64.99910 * 22 12 11 24 24 H 1.08999 * 109.47022 * 299.99941 * 1 2 3 25 25 H 1.09001 * 109.47170 * 59.99219 * 1 2 3 26 26 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.92147 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.00249 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.08056 * 179.97438 * 9 6 5 30 30 H 0.97002 * 119.99614 * 180.02562 * 17 16 14 31 31 H 1.08992 * 109.47420 * 184.99967 * 22 12 11 32 32 H 1.09003 * 109.46890 * 305.00340 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2883 2.3735 0.0005 5 6 1.9090 3.6039 0.0000 6 6 3.3041 3.6826 -0.0005 7 6 3.9509 4.9602 -0.0005 8 7 4.4640 5.9738 0.0027 9 6 4.0667 2.5116 -0.0011 10 6 3.4377 1.2814 0.0047 11 8 4.1768 0.1398 0.0102 12 6 5.5964 0.2857 -0.0633 13 1 5.8847 1.2500 0.3551 14 6 6.2562 -0.8195 0.7206 15 1 5.6518 -1.5590 1.2248 16 6 7.6313 -0.8858 0.7949 17 7 8.3673 0.0150 0.1813 18 14 8.4492 -2.2553 1.7671 19 1 8.0568 -3.5693 1.1973 20 1 9.9244 -2.1037 1.6906 21 1 8.0164 -2.1819 3.1857 22 6 6.0419 0.2102 -1.5251 23 17 5.3703 1.6167 -2.4314 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2099 2.3140 0.0014 28 1 1.3172 4.5074 0.0008 29 1 5.1452 2.5680 -0.0019 30 1 9.3348 -0.0319 0.2333 31 1 7.1305 0.2322 -1.5748 32 1 5.6766 -0.7160 -1.9689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225684772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:42 Heat of formation + Delta-G solvation = -29.065113 kcal Electronic energy + Delta-G solvation = -19496.626953 eV Core-core repulsion = 16256.335178 eV Total energy + Delta-G solvation = -3240.291776 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25545 -38.17756 -37.23562 -35.63286 -34.87567 -33.48968 -30.47019 -30.28123 -28.89667 -27.26882 -25.36345 -23.28063 -22.89047 -20.58130 -19.00957 -17.86844 -16.96325 -16.10572 -16.05146 -15.66499 -14.75925 -14.52923 -14.35804 -14.00251 -13.52489 -13.52063 -13.30604 -12.94701 -12.50207 -12.26026 -12.15290 -11.88594 -11.80574 -11.33607 -11.16500 -11.04999 -10.94625 -10.79677 -10.73991 -10.29500 -9.78083 -9.48460 -9.26906 -8.71445 -8.33887 -7.34444 -6.45939 -4.53778 1.09115 1.62898 2.93927 3.13340 3.20026 3.22128 3.23259 3.35959 3.43036 3.92524 4.14629 4.19781 4.28743 4.90039 4.92573 5.12944 5.20772 5.22956 5.44419 5.53172 5.60820 5.88240 6.10751 6.21193 6.24312 6.29882 6.53848 6.70949 6.82504 7.09578 7.41708 7.54634 7.71674 7.76312 8.24603 8.62980 9.14195 10.61196 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.006487 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.510311 B = 4315.520951 C = 5168.782427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.298 6.298 3 C 0.114 3.886 4 C -0.183 4.183 5 C -0.083 4.083 6 C -0.037 4.037 7 C 0.269 3.731 8 N -0.436 5.436 9 C -0.115 4.115 10 C 0.132 3.868 11 O -0.294 6.294 12 C 0.203 3.797 13 H 0.050 0.950 14 C -0.521 4.521 15 H 0.078 0.922 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.917 3.083 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.037 4.037 23 Cl -0.242 7.242 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.154 0.846 30 H 0.273 0.727 31 H 0.134 0.866 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 0.838 -0.951 12.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.067 3.933 4 C -0.202 4.202 5 C -0.104 4.104 6 C -0.041 4.041 7 C -0.045 4.045 8 N -0.112 5.112 9 C -0.136 4.136 10 C 0.084 3.916 11 O -0.207 6.207 12 C 0.149 3.851 13 H 0.068 0.932 14 C -0.559 4.559 15 H 0.096 0.904 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.743 3.257 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.099 4.099 23 Cl -0.216 7.216 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.083 0.917 31 H 0.152 0.848 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.559 2.142 -1.038 11.802 hybrid contribution 0.254 -0.707 0.267 0.797 sum -11.306 1.435 -0.771 11.422 Atomic orbital electron populations 1.23057 0.79140 1.03787 1.00986 1.86220 1.20490 1.25969 1.88370 1.18540 0.89474 0.85018 1.00246 1.20792 0.99720 0.90991 1.08723 1.20612 0.91963 0.97478 1.00300 1.15648 0.92343 0.86000 1.10062 1.25682 0.93118 0.92695 0.93047 1.81181 1.08236 1.11772 1.09992 1.21355 1.01641 0.89675 1.00969 1.18106 0.88369 0.87140 0.98004 1.86282 1.21852 1.26260 1.86313 1.20594 0.73149 1.00154 0.91234 0.93243 1.20962 0.91195 1.12198 1.31543 0.90398 1.24980 0.96765 0.96707 0.95459 1.69783 1.06585 1.34136 1.42088 0.86222 0.77890 0.81244 0.80322 1.19686 1.20874 1.19682 1.25811 1.04367 0.86353 0.93372 1.98646 1.89034 1.53654 1.80283 0.92823 0.92831 0.88435 0.84518 0.85346 0.82898 0.91671 0.84785 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.67 10.27 -33.93 -0.35 -5.02 16 3 C 0.11 1.85 6.71 -38.95 -0.26 1.59 16 4 C -0.18 -2.33 9.01 -39.53 -0.36 -2.68 16 5 C -0.08 -1.07 9.74 -39.18 -0.38 -1.45 16 6 C -0.04 -0.58 5.74 -106.85 -0.61 -1.19 16 7 C 0.27 4.52 15.33 -22.47 -0.34 4.18 16 8 N -0.44 -7.96 18.54 41.84 0.78 -7.18 16 9 C -0.12 -2.11 6.74 -39.04 -0.26 -2.37 16 10 C 0.13 2.52 5.98 -39.18 -0.23 2.28 16 11 O -0.29 -6.54 9.51 -34.39 -0.33 -6.86 16 12 C 0.20 4.76 2.19 -27.88 -0.06 4.70 16 13 H 0.05 1.21 5.40 -51.93 -0.28 0.93 16 14 C -0.52 -13.20 8.88 -34.44 -0.31 -13.51 16 15 H 0.08 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 17 N -0.89 -22.72 11.29 55.43 0.63 -22.09 16 18 Si 0.92 19.57 29.54 -169.99 -5.02 14.55 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 23 Cl -0.24 -4.86 25.59 -51.86 -1.33 -6.19 16 24 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 25 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.14 1.25 6.27 -52.48 -0.33 0.92 16 28 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.15 3.07 5.08 -52.49 -0.27 2.80 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.13 3.19 5.95 -51.93 -0.31 2.88 16 32 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 296.13 15.07 4.46 4.46 Total: -1.00 -27.30 296.13 -5.65 -32.95 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.79 Total: 1.67 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.70 Total: -6.28 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 1.40 Total: -29.28 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.68 Total: -11.88 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 17 Polarization: -4.86 SS G_CDS: -1.33 Total: -6.19 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.30 -5.65 -32.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225684772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.882 kcal (2) G-P(sol) polarization free energy of solvation -27.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds