Wall clock time and date at job start Tue Mar 31 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35845 * 116.99960 * 2 1 4 4 C 1.38797 * 119.92520 * 0.02562 * 3 2 1 5 5 C 1.37820 * 120.15514 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.99473 * 359.97438 * 5 4 3 7 7 C 1.43205 * 120.07592 * 180.02562 * 6 5 4 8 8 N 6.70052 * 116.93234 * 0.02562 * 2 1 3 9 9 C 1.39745 * 119.85102 * 0.02562 * 6 5 4 10 10 C 1.38169 * 119.84286 * 359.72576 * 9 6 5 11 11 O 1.35991 * 120.00139 * 180.29298 * 10 9 6 12 12 C 1.42898 * 116.99902 * 356.71416 * 11 10 9 13 13 H 1.09004 * 109.47453 * 26.96778 * 12 11 10 14 14 C 1.50707 * 109.47424 * 146.97021 * 12 11 10 15 15 H 1.08000 * 119.99406 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00218 * 180.02562 * 14 12 11 17 17 N 1.31516 * 120.00078 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00055 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46805 * 59.99755 * 18 16 14 20 20 H 1.48496 * 109.47121 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47343 * 300.00354 * 18 16 14 22 22 C 1.53005 * 109.47367 * 266.96569 * 12 11 10 23 23 Cl 1.80301 * 109.46583 * 64.99910 * 22 12 11 24 24 H 1.08999 * 109.47022 * 299.99941 * 1 2 3 25 25 H 1.09001 * 109.47170 * 59.99219 * 1 2 3 26 26 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.92147 * 0.02562 * 4 3 2 28 28 H 1.07999 * 120.00249 * 180.02562 * 5 4 3 29 29 H 1.07997 * 120.08056 * 179.97438 * 9 6 5 30 30 H 0.97002 * 119.99614 * 180.02562 * 17 16 14 31 31 H 1.08992 * 109.47420 * 184.99967 * 22 12 11 32 32 H 1.09003 * 109.46890 * 305.00340 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.2883 2.3735 0.0005 5 6 1.9090 3.6039 0.0000 6 6 3.3041 3.6826 -0.0005 7 6 3.9509 4.9602 -0.0005 8 7 4.4640 5.9738 0.0027 9 6 4.0667 2.5116 -0.0011 10 6 3.4377 1.2814 0.0047 11 8 4.1768 0.1398 0.0102 12 6 5.5964 0.2857 -0.0633 13 1 5.8847 1.2500 0.3551 14 6 6.2562 -0.8195 0.7206 15 1 5.6518 -1.5590 1.2248 16 6 7.6313 -0.8858 0.7949 17 7 8.3673 0.0150 0.1813 18 14 8.4492 -2.2553 1.7671 19 1 8.0568 -3.5693 1.1973 20 1 9.9244 -2.1037 1.6906 21 1 8.0164 -2.1819 3.1857 22 6 6.0419 0.2102 -1.5251 23 17 5.3703 1.6167 -2.4314 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.2099 2.3140 0.0014 28 1 1.3172 4.5074 0.0008 29 1 5.1452 2.5680 -0.0019 30 1 9.3348 -0.0319 0.2333 31 1 7.1305 0.2322 -1.5748 32 1 5.6766 -0.7160 -1.9689 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225684772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:42 Heat of formation + Delta-G solvation = -43.900296 kcal Electronic energy + Delta-G solvation = -19497.270255 eV Core-core repulsion = 16256.335178 eV Total energy + Delta-G solvation = -3240.935077 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.51877 -39.51768 -38.57215 -36.98615 -36.54493 -35.32988 -31.92731 -31.56430 -30.40774 -28.16910 -27.25915 -24.63284 -24.19437 -22.10432 -20.40238 -19.03262 -18.66354 -17.65472 -17.37225 -16.77224 -16.47743 -15.86714 -15.66024 -15.41240 -14.91665 -14.75154 -14.68411 -14.50450 -13.97053 -13.85344 -13.43311 -13.26575 -13.04576 -12.95985 -12.76727 -12.65077 -12.37171 -12.07158 -11.93172 -11.84519 -11.48016 -11.18679 -10.99308 -10.57071 -9.59103 -8.68925 -8.35736 -6.51323 -0.15881 0.43412 1.41887 1.44855 1.54095 1.60414 1.61415 1.93284 2.27751 2.41174 2.67916 2.90149 2.92404 2.99513 3.86524 4.02580 4.21160 4.28358 4.36150 4.44488 4.52712 4.56704 4.70907 4.86676 4.89579 5.01296 5.18378 5.27046 5.33820 5.56157 5.64608 5.86170 6.30236 6.44190 6.55809 6.87727 7.21498 8.70416 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.006487 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.510311 B = 4315.520951 C = 5168.782427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.118 3.882 4 C -0.167 4.167 5 C -0.054 4.054 6 C -0.051 4.051 7 C 0.285 3.715 8 N -0.467 5.467 9 C -0.123 4.123 10 C 0.088 3.912 11 O -0.315 6.315 12 C 0.211 3.789 13 H 0.031 0.969 14 C -0.545 4.545 15 H 0.068 0.932 16 C 0.027 3.973 17 N -0.911 5.911 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.026 4.026 23 Cl -0.223 7.223 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.185 0.815 28 H 0.171 0.829 29 H 0.124 0.876 30 H 0.275 0.725 31 H 0.116 0.884 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 1.069 -0.836 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.071 3.929 4 C -0.185 4.185 5 C -0.074 4.074 6 C -0.055 4.055 7 C -0.029 4.029 8 N -0.143 5.143 9 C -0.145 4.145 10 C 0.042 3.958 11 O -0.230 6.230 12 C 0.155 3.845 13 H 0.048 0.952 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.548 5.548 18 Si 0.799 3.201 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.089 4.089 23 Cl -0.197 7.197 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.130 0.870 27 H 0.202 0.798 28 H 0.188 0.812 29 H 0.142 0.858 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.246 2.383 -0.931 14.474 hybrid contribution 0.872 -0.730 0.211 1.157 sum -13.375 1.652 -0.720 13.496 Atomic orbital electron populations 1.23471 0.75958 1.05665 1.03019 1.86188 1.23843 1.26104 1.88079 1.18772 0.88570 0.86577 0.98999 1.21276 1.01706 0.89228 1.06310 1.21106 0.90583 0.99301 0.96429 1.15715 0.93667 0.84481 1.11593 1.25808 0.92458 0.92547 0.92113 1.81191 1.08900 1.12899 1.11339 1.21092 1.00467 0.90655 1.02251 1.18447 0.89658 0.86342 1.01364 1.86196 1.20899 1.28195 1.87683 1.20272 0.74364 0.98477 0.91355 0.95183 1.21210 0.91877 1.12769 1.32436 0.91396 1.25713 0.97035 0.98613 0.96100 1.69882 1.06759 1.35356 1.42815 0.85322 0.77043 0.78789 0.78935 1.19048 1.20266 1.19498 1.25446 1.03114 0.87051 0.93314 1.98635 1.88764 1.52636 1.79691 0.90610 0.90693 0.86992 0.79791 0.81188 0.85790 0.91537 0.86610 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -9.69 10.27 -77.78 -0.80 -10.49 16 3 C 0.12 3.60 6.71 22.68 0.15 3.75 16 4 C -0.17 -3.49 9.01 22.30 0.20 -3.29 16 5 C -0.05 -1.17 9.74 22.53 0.22 -0.95 16 6 C -0.05 -1.53 5.74 -21.31 -0.12 -1.66 16 7 C 0.28 9.34 15.33 88.33 1.35 10.69 16 8 N -0.47 -16.85 18.54 19.01 0.35 -16.50 16 9 C -0.12 -4.59 6.74 22.62 0.15 -4.44 16 10 C 0.09 3.41 5.98 22.53 0.13 3.54 16 11 O -0.32 -14.58 9.51 -79.42 -0.76 -15.34 16 12 C 0.21 10.35 2.19 29.85 0.07 10.42 16 13 H 0.03 1.59 5.40 -2.39 -0.01 1.58 16 14 C -0.55 -28.72 8.88 25.60 0.23 -28.50 16 15 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 16 C 0.03 1.35 5.29 84.65 0.45 1.80 16 17 N -0.91 -47.94 11.29 21.45 0.24 -47.70 16 18 Si 0.98 40.56 29.54 68.60 2.03 42.59 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 C -0.03 -1.21 6.17 71.98 0.44 -0.77 16 23 Cl -0.22 -9.16 25.59 -2.72 -0.07 -9.23 16 24 H 0.08 0.86 7.65 -2.39 -0.02 0.84 16 25 H 0.07 0.86 7.65 -2.39 -0.02 0.85 16 26 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.18 2.13 6.27 -2.91 -0.02 2.11 16 28 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.12 5.29 5.08 -2.91 -0.01 5.28 16 30 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 31 H 0.12 5.77 5.95 -2.39 -0.01 5.75 16 32 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 Total: -1.00 -62.05 296.13 6.55 -55.50 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.17 Total: 9.25 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.39 Total: -8.08 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.59 Total: -64.20 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.55 Total: -25.83 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 17 Polarization: -9.16 SS G_CDS: -0.07 Total: -9.23 kcal Total: -62.05 6.55 -55.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225684772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.597 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds