Wall clock time and date at job start Tue Mar 31 2020 05:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29806 * 126.28190 * 2 1 4 4 O 1.41359 * 109.71237 * 179.97438 * 3 2 1 5 5 C 1.34859 * 109.31120 * 359.46138 * 4 3 2 6 6 C 1.38943 * 133.34547 * 180.02562 * 5 4 3 7 7 C 1.37863 * 120.06513 * 179.74189 * 6 5 4 8 8 C 1.38625 * 120.67926 * 0.27767 * 7 6 5 9 9 C 1.38237 * 120.30589 * 359.97438 * 8 7 6 10 10 O 1.35759 * 120.22985 * 180.02562 * 9 8 7 11 11 C 1.42899 * 116.99914 * 2.00795 * 10 9 8 12 12 H 1.08998 * 109.47362 * 22.32406 * 11 10 9 13 13 C 1.50701 * 109.47291 * 142.32012 * 11 10 9 14 14 H 1.08003 * 119.99795 * 25.67712 * 13 11 10 15 15 C 1.37879 * 119.99881 * 205.67104 * 13 11 10 16 16 N 1.31519 * 119.99546 * 185.09478 * 15 13 11 17 17 Si 1.86796 * 120.00205 * 5.09373 * 15 13 11 18 18 H 1.48507 * 109.46984 * 94.40342 * 17 15 13 19 19 H 1.48502 * 109.47019 * 214.40200 * 17 15 13 20 20 H 1.48498 * 109.47102 * 334.40306 * 17 15 13 21 21 C 1.52999 * 109.47059 * 262.32347 * 11 10 9 22 22 Cl 1.80298 * 109.47091 * 63.07710 * 21 11 10 23 23 C 1.40181 * 119.54599 * 0.02562 * 9 8 7 24 24 H 1.08996 * 109.46807 * 270.75399 * 1 2 3 25 25 H 1.08998 * 109.47117 * 30.75382 * 1 2 3 26 26 H 1.08997 * 109.46679 * 150.75564 * 1 2 3 27 27 H 1.07999 * 119.96647 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.66120 * 180.25480 * 7 6 5 29 29 H 1.08003 * 119.84879 * 179.97438 * 8 7 6 30 30 H 0.97004 * 119.99533 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.47175 * 183.08107 * 21 11 10 32 32 H 1.08994 * 109.46988 * 303.07500 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0464 0.0000 4 8 3.6301 0.6433 0.0006 5 6 3.6946 -0.7037 0.0129 6 6 4.7495 -1.6080 0.0193 7 6 4.4974 -2.9632 0.0377 8 6 3.1959 -3.4405 0.0442 9 6 2.1300 -2.5603 0.0329 10 8 0.8561 -3.0295 0.0398 11 6 0.6871 -4.4470 0.1036 12 1 1.5835 -4.9011 0.5259 13 6 -0.4989 -4.7729 0.9744 14 1 -1.2950 -4.0528 1.0941 15 6 -0.5678 -5.9902 1.6181 16 7 -1.6467 -6.3152 2.2964 17 14 0.8712 -7.1777 1.5269 18 1 1.7465 -6.9867 2.7114 19 1 0.3616 -8.5724 1.5079 20 1 1.6496 -6.9181 0.2892 21 6 0.4521 -4.9965 -1.3048 22 17 1.9083 -4.6863 -2.3217 23 6 2.3736 -1.1800 0.0142 24 1 -0.3633 0.0135 1.0276 25 1 -0.3633 0.8831 -0.5255 26 1 -0.3632 -0.8967 -0.5021 27 1 5.7680 -1.2487 0.0145 28 1 5.3223 -3.6603 0.0468 29 1 3.0138 -4.5050 0.0583 30 1 -1.6950 -7.1715 2.7496 31 1 0.2689 -6.0696 -1.2503 32 1 -0.4125 -4.5024 -1.7479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233664431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:04 Heat of formation + Delta-G solvation = 11.807038 kcal Electronic energy + Delta-G solvation = -19890.157697 eV Core-core repulsion = 16651.638271 eV Total energy + Delta-G solvation = -3238.519426 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.47985 -39.16994 -36.46512 -35.30950 -34.29341 -33.35249 -30.91937 -29.77010 -29.10346 -28.32550 -25.47105 -23.22207 -22.81916 -21.00525 -19.99806 -18.08066 -17.31084 -16.73182 -16.28850 -15.85218 -15.08091 -14.92815 -14.56013 -13.81086 -13.59973 -13.30749 -13.19828 -13.08761 -12.92579 -12.58608 -12.44587 -12.04232 -11.55112 -11.48890 -11.30889 -11.18732 -10.96684 -10.81184 -10.40908 -10.19043 -9.94409 -9.69787 -9.48256 -9.01714 -8.63889 -7.62558 -6.58313 -4.66146 0.96824 1.59652 2.31224 2.80991 2.82199 2.97075 3.01787 3.07830 3.66420 3.87335 3.95100 4.35052 4.58828 4.73538 4.94579 5.14563 5.33329 5.51984 5.55532 5.63787 5.67258 5.74116 5.77348 5.87591 5.98430 6.18759 6.31898 6.34620 6.48764 6.58364 6.82190 6.99873 7.46954 7.69105 8.12466 8.54000 8.96641 10.52022 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.006740 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.039400 B = 4153.495296 C = 4571.726247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.161 3.839 3 N -0.315 5.315 4 O -0.104 6.104 5 C 0.120 3.880 6 C -0.189 4.189 7 C -0.017 4.017 8 C -0.245 4.245 9 C 0.242 3.758 10 O -0.288 6.288 11 C 0.175 3.825 12 H 0.054 0.946 13 C -0.529 4.529 14 H 0.093 0.907 15 C 0.087 3.913 16 N -0.866 5.866 17 Si 0.857 3.143 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.255 1.255 21 C -0.040 4.040 22 Cl -0.226 7.226 23 C -0.240 4.240 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.275 0.725 31 H 0.098 0.902 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 3.700 -4.822 9.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 N -0.064 5.064 4 O -0.112 6.112 5 C 0.066 3.934 6 C -0.209 4.209 7 C -0.036 4.036 8 C -0.264 4.264 9 C 0.191 3.809 10 O -0.199 6.199 11 C 0.120 3.880 12 H 0.072 0.928 13 C -0.566 4.566 14 H 0.111 0.889 15 C -0.120 4.120 16 N -0.501 5.501 17 Si 0.682 3.318 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.179 1.179 21 C -0.103 4.103 22 Cl -0.201 7.201 23 C -0.245 4.245 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.222 4.994 -4.782 9.999 hybrid contribution 0.776 -1.817 -0.012 1.976 sum 7.998 3.177 -4.795 9.851 Atomic orbital electron populations 1.20496 0.84445 1.04784 1.04696 1.24489 0.98086 0.89240 0.90014 1.79822 0.84903 1.18055 1.23571 1.89087 1.23024 1.17190 1.81867 1.19981 0.94291 0.84579 0.94585 1.19691 0.96649 0.90865 1.13711 1.20792 0.96433 0.93902 0.92467 1.21279 0.92150 1.00720 1.12243 1.18557 0.85603 0.89828 0.86913 1.86196 1.21677 1.27593 1.84391 1.20993 0.99608 0.75637 0.91776 0.92811 1.20686 1.04490 1.03216 1.28177 0.88891 1.24902 0.95878 0.97419 0.93760 1.69832 1.26669 1.22881 1.30700 0.87141 0.83224 0.81317 0.80163 1.19090 1.19978 1.17909 1.26034 0.87792 1.03844 0.92646 1.98679 1.49237 1.97096 1.75044 1.19901 0.91717 0.92278 1.20593 0.88721 0.90142 0.88149 0.85058 0.84716 0.84009 0.91481 0.88358 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.29 36.01 0.37 -0.82 16 2 C 0.16 2.75 7.46 -80.16 -0.60 2.16 16 3 N -0.31 -5.64 12.82 34.88 0.45 -5.19 16 4 O -0.10 -1.90 12.07 7.57 0.09 -1.81 16 5 C 0.12 2.08 7.48 -38.50 -0.29 1.79 16 6 C -0.19 -2.78 10.06 -39.46 -0.40 -3.18 16 7 C -0.02 -0.24 10.01 -39.58 -0.40 -0.63 16 8 C -0.25 -4.20 7.27 -39.44 -0.29 -4.49 16 9 C 0.24 4.55 6.12 -38.85 -0.24 4.31 16 10 O -0.29 -5.82 8.67 -18.99 -0.16 -5.98 16 11 C 0.18 3.63 1.69 -27.88 -0.05 3.59 16 12 H 0.05 1.12 2.91 -51.93 -0.15 0.97 16 13 C -0.53 -12.93 9.23 -34.44 -0.32 -13.25 16 14 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 15 C 0.09 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.87 -23.18 13.96 55.43 0.77 -22.40 16 17 Si 0.86 18.05 26.38 -169.99 -4.48 13.57 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.26 -4.96 5.98 56.52 0.34 -4.62 16 21 C -0.04 -0.75 5.96 37.16 0.22 -0.53 16 22 Cl -0.23 -3.92 25.89 -51.86 -1.34 -5.26 16 23 C -0.24 -4.40 6.27 -105.06 -0.66 -5.06 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.10 1.44 7.32 -51.93 -0.38 1.06 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 2.47 5.06 -52.48 -0.27 2.21 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.10 1.79 6.92 -51.93 -0.36 1.43 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 286.38 15.07 4.32 4.32 Total: -1.00 -26.99 286.38 -5.99 -32.98 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -2.89 Total: 3.82 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.73 Total: -14.03 kcal Atomic # 7 Polarization: -28.82 SS G_CDS: 1.22 Total: -27.60 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.07 Total: -7.79 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -4.48 Total: 13.57 kcal Atomic # 17 Polarization: -3.92 SS G_CDS: -1.34 Total: -5.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.99 -5.99 -32.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233664431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.784 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds