Wall clock time and date at job start Tue Mar 31 2020 05:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29806 * 126.28190 * 2 1 4 4 O 1.41359 * 109.71237 * 179.97438 * 3 2 1 5 5 C 1.34859 * 109.31120 * 359.46138 * 4 3 2 6 6 C 1.38943 * 133.34547 * 180.02562 * 5 4 3 7 7 C 1.37863 * 120.06513 * 179.74189 * 6 5 4 8 8 C 1.38625 * 120.67926 * 0.27767 * 7 6 5 9 9 C 1.38237 * 120.30589 * 359.97438 * 8 7 6 10 10 O 1.35759 * 120.22985 * 180.02562 * 9 8 7 11 11 C 1.42899 * 116.99914 * 2.00795 * 10 9 8 12 12 H 1.08998 * 109.47362 * 22.32406 * 11 10 9 13 13 C 1.50701 * 109.47291 * 142.32012 * 11 10 9 14 14 H 1.08003 * 119.99795 * 25.67712 * 13 11 10 15 15 C 1.37879 * 119.99881 * 205.67104 * 13 11 10 16 16 N 1.31519 * 119.99546 * 185.09478 * 15 13 11 17 17 Si 1.86796 * 120.00205 * 5.09373 * 15 13 11 18 18 H 1.48507 * 109.46984 * 94.40342 * 17 15 13 19 19 H 1.48502 * 109.47019 * 214.40200 * 17 15 13 20 20 H 1.48498 * 109.47102 * 334.40306 * 17 15 13 21 21 C 1.52999 * 109.47059 * 262.32347 * 11 10 9 22 22 Cl 1.80298 * 109.47091 * 63.07710 * 21 11 10 23 23 C 1.40181 * 119.54599 * 0.02562 * 9 8 7 24 24 H 1.08996 * 109.46807 * 270.75399 * 1 2 3 25 25 H 1.08998 * 109.47117 * 30.75382 * 1 2 3 26 26 H 1.08997 * 109.46679 * 150.75564 * 1 2 3 27 27 H 1.07999 * 119.96647 * 0.02562 * 6 5 4 28 28 H 1.08001 * 119.66120 * 180.25480 * 7 6 5 29 29 H 1.08003 * 119.84879 * 179.97438 * 8 7 6 30 30 H 0.97004 * 119.99533 * 180.02562 * 16 15 13 31 31 H 1.09002 * 109.47175 * 183.08107 * 21 11 10 32 32 H 1.08994 * 109.46988 * 303.07500 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0464 0.0000 4 8 3.6301 0.6433 0.0006 5 6 3.6946 -0.7037 0.0129 6 6 4.7495 -1.6080 0.0193 7 6 4.4974 -2.9632 0.0377 8 6 3.1959 -3.4405 0.0442 9 6 2.1300 -2.5603 0.0329 10 8 0.8561 -3.0295 0.0398 11 6 0.6871 -4.4470 0.1036 12 1 1.5835 -4.9011 0.5259 13 6 -0.4989 -4.7729 0.9744 14 1 -1.2950 -4.0528 1.0941 15 6 -0.5678 -5.9902 1.6181 16 7 -1.6467 -6.3152 2.2964 17 14 0.8712 -7.1777 1.5269 18 1 1.7465 -6.9867 2.7114 19 1 0.3616 -8.5724 1.5079 20 1 1.6496 -6.9181 0.2892 21 6 0.4521 -4.9965 -1.3048 22 17 1.9083 -4.6863 -2.3217 23 6 2.3736 -1.1800 0.0142 24 1 -0.3633 0.0135 1.0276 25 1 -0.3633 0.8831 -0.5255 26 1 -0.3632 -0.8967 -0.5021 27 1 5.7680 -1.2487 0.0145 28 1 5.3223 -3.6603 0.0468 29 1 3.0138 -4.5050 0.0583 30 1 -1.6950 -7.1715 2.7496 31 1 0.2689 -6.0696 -1.2503 32 1 -0.4125 -4.5024 -1.7479 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233664431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:04 Heat of formation + Delta-G solvation = -3.478399 kcal Electronic energy + Delta-G solvation = -19890.820524 eV Core-core repulsion = 16651.638271 eV Total energy + Delta-G solvation = -3239.182252 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.79547 -40.62559 -37.79988 -36.74877 -35.64484 -35.11172 -32.54523 -31.08010 -30.42330 -29.54926 -27.22592 -24.65639 -24.08403 -22.49595 -21.35889 -19.68153 -18.75815 -18.25570 -17.70367 -17.20665 -16.61539 -16.26322 -16.01679 -15.30914 -15.02892 -14.71852 -14.68437 -14.36185 -14.33592 -13.94673 -13.64356 -13.49518 -13.07816 -12.92091 -12.79650 -12.58972 -12.37216 -12.16804 -11.87135 -11.71627 -11.49092 -11.18488 -11.10145 -10.82977 -9.94020 -8.97080 -8.48135 -6.61678 -0.32008 0.28231 1.02492 1.26406 1.34054 1.39249 1.41340 1.51981 2.19048 2.20794 2.59311 2.89227 3.10743 3.30998 3.67792 3.90753 3.97899 4.09336 4.17285 4.32079 4.41842 4.48999 4.56266 4.59246 4.71228 4.85550 5.01756 5.12557 5.15820 5.26996 5.36550 5.57090 5.90096 6.18219 6.46109 6.60904 7.05986 8.66314 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.006740 C = 0.006123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.039400 B = 4153.495296 C = 4571.726247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.156 3.844 3 N -0.329 5.329 4 O -0.116 6.116 5 C 0.103 3.897 6 C -0.176 4.176 7 C -0.005 4.005 8 C -0.252 4.252 9 C 0.217 3.783 10 O -0.303 6.303 11 C 0.182 3.818 12 H 0.060 0.940 13 C -0.536 4.536 14 H 0.050 0.950 15 C 0.039 3.961 16 N -0.917 5.917 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.226 1.226 21 C -0.038 4.038 22 Cl -0.207 7.207 23 C -0.262 4.262 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.166 0.834 28 H 0.179 0.821 29 H 0.141 0.859 30 H 0.277 0.723 31 H 0.105 0.895 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 3.046 -5.758 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.023 4.023 3 N -0.078 5.078 4 O -0.123 6.123 5 C 0.050 3.950 6 C -0.195 4.195 7 C -0.024 4.024 8 C -0.271 4.271 9 C 0.167 3.833 10 O -0.215 6.215 11 C 0.127 3.873 12 H 0.078 0.922 13 C -0.573 4.573 14 H 0.068 0.932 15 C -0.164 4.164 16 N -0.554 5.554 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.149 1.149 21 C -0.101 4.101 22 Cl -0.181 7.181 23 C -0.266 4.266 24 H 0.119 0.881 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.184 0.816 28 H 0.197 0.803 29 H 0.159 0.841 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.040 4.362 -5.739 12.360 hybrid contribution -0.043 -1.493 0.259 1.516 sum 9.997 2.869 -5.480 11.756 Atomic orbital electron populations 1.20580 0.82740 1.05479 1.05340 1.24932 0.99230 0.88889 0.89206 1.79780 0.85005 1.18504 1.24562 1.89043 1.23180 1.17786 1.82270 1.20438 0.94815 0.84491 0.95282 1.20207 0.97587 0.90557 1.11172 1.21274 0.96442 0.94466 0.90222 1.21454 0.92983 1.00407 1.12254 1.18752 0.85354 0.90333 0.88878 1.86138 1.23083 1.26913 1.85350 1.20755 0.97939 0.76308 0.92298 0.92241 1.20787 1.04842 1.02518 1.29188 0.93162 1.25694 0.98359 0.99166 0.93161 1.69965 1.29113 1.23801 1.32510 0.86213 0.80048 0.78790 0.81351 1.18863 1.19716 1.14877 1.25693 0.88494 1.04008 0.91880 1.98676 1.48101 1.97100 1.74206 1.20170 0.92678 0.92484 1.21282 0.88052 0.87721 0.89040 0.81611 0.80349 0.84113 0.91332 0.87694 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.32 10.29 71.24 0.73 -1.59 16 2 C 0.16 5.33 7.46 44.99 0.34 5.66 16 3 N -0.33 -11.66 12.82 -43.55 -0.56 -12.21 16 4 O -0.12 -4.10 12.07 29.47 0.36 -3.75 16 5 C 0.10 3.42 7.48 22.97 0.17 3.59 16 6 C -0.18 -4.51 10.06 22.35 0.22 -4.28 16 7 C -0.01 -0.13 10.01 22.27 0.22 0.10 16 8 C -0.25 -7.96 7.27 22.36 0.16 -7.79 16 9 C 0.22 7.92 6.12 22.74 0.14 8.06 16 10 O -0.30 -12.28 8.67 -90.85 -0.79 -13.07 16 11 C 0.18 7.47 1.69 29.85 0.05 7.52 16 12 H 0.06 2.36 2.91 -2.39 -0.01 2.36 16 13 C -0.54 -26.93 9.23 25.60 0.24 -26.69 16 14 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 15 C 0.04 1.95 5.47 84.65 0.46 2.41 16 16 N -0.92 -50.59 13.96 21.45 0.30 -50.29 16 17 Si 0.91 36.30 26.38 68.60 1.81 38.11 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.23 -7.82 5.98 99.48 0.59 -7.23 16 21 C -0.04 -1.35 5.96 71.98 0.43 -0.92 16 22 Cl -0.21 -6.64 25.89 -2.72 -0.07 -6.71 16 23 C -0.26 -9.40 6.27 -20.15 -0.13 -9.52 16 24 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.09 2.70 7.32 -2.39 -0.02 2.68 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 29 H 0.14 4.45 5.06 -2.91 -0.01 4.44 16 30 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.10 3.61 6.92 -2.39 -0.02 3.59 16 32 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -59.80 286.38 5.14 -54.65 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 1.05 Total: 16.72 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.04 Total: -23.45 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.26 Total: -62.50 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.43 Total: -16.82 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 1.81 Total: 38.11 kcal Atomic # 17 Polarization: -6.64 SS G_CDS: -0.07 Total: -6.71 kcal Total: -59.80 5.14 -54.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233664431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.175 kcal (2) G-P(sol) polarization free energy of solvation -59.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds