Wall clock time and date at job start Tue Mar 31 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47341 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.99961 * 3 2 1 6 6 H 1.48508 * 109.47253 * 149.99772 * 3 2 1 7 7 C 1.37881 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99732 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46870 * 299.99174 * 9 7 2 11 11 C 1.52999 * 109.47466 * 59.99185 * 9 7 2 12 12 Cl 1.80306 * 109.46911 * 185.00072 * 11 9 7 13 13 O 1.42901 * 109.47192 * 179.97438 * 9 7 2 14 14 C 1.35897 * 117.00450 * 146.70581 * 13 9 7 15 15 C 1.38943 * 120.09619 * 356.74713 * 14 13 9 16 16 C 1.38173 * 119.76350 * 179.97438 * 15 14 13 17 17 C 1.38014 * 120.43243 * 359.97438 * 16 15 14 18 18 C 1.39372 * 120.24859 * 0.04362 * 17 16 15 19 19 C 1.38111 * 120.10182 * 176.74682 * 14 13 9 20 20 C 1.51130 * 132.86613 * 0.02562 * 19 14 13 21 21 C 1.51396 * 104.06380 * 180.02562 * 20 19 14 22 22 O 1.21284 * 126.44720 * 180.02562 * 21 20 19 23 23 N 1.34373 * 107.09856 * 359.97438 * 21 20 19 24 24 H 0.97000 * 120.00532 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47324 * 304.99963 * 11 9 7 26 26 H 1.09001 * 109.46631 * 65.00275 * 11 9 7 27 27 H 1.08004 * 120.12198 * 0.02562 * 15 14 13 28 28 H 1.07993 * 119.78703 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.87389 * 180.02562 * 17 16 15 30 30 H 1.09003 * 110.51398 * 61.37592 * 20 19 14 31 31 H 1.09008 * 110.50992 * 298.66954 * 20 19 14 32 32 H 0.96998 * 123.87242 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8905 11 6 0.3717 -2.5805 -1.2489 12 17 -0.6388 -4.0720 -1.1766 13 8 2.1796 -3.5853 0.0005 14 6 1.8113 -4.7120 0.6652 15 6 0.6099 -4.7485 1.3621 16 6 0.2419 -5.8978 2.0351 17 6 1.0597 -7.0095 2.0189 18 6 2.2670 -6.9829 1.3232 19 6 2.6301 -5.8241 0.6500 20 6 3.9676 -6.1074 0.0057 21 6 4.2744 -7.5345 0.4073 22 8 5.2612 -8.1717 0.1052 23 7 3.2483 -7.9618 1.1623 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2758 -1.7049 -1.2952 26 1 1.0037 -2.6124 -2.1364 27 1 -0.0346 -3.8819 1.3771 28 1 -0.6916 -5.9265 2.5772 29 1 0.7630 -7.9033 2.5477 30 1 4.7289 -5.4297 0.3921 31 1 3.8947 -6.0230 -1.0786 32 1 3.1953 -8.8494 1.5501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234114647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:58 Heat of formation + Delta-G solvation = -51.592638 kcal Electronic energy + Delta-G solvation = -19565.960638 eV Core-core repulsion = 16324.691996 eV Total energy + Delta-G solvation = -3241.268642 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19923 -39.01067 -37.34082 -35.13885 -34.83415 -33.53820 -31.66076 -29.53155 -28.79515 -27.33594 -25.39713 -22.99075 -21.48994 -21.12464 -20.52596 -18.06157 -17.03877 -16.54466 -16.09288 -15.86732 -15.26921 -14.83667 -14.53792 -14.28323 -13.93501 -13.33808 -13.12729 -12.81695 -12.62298 -12.26029 -12.10752 -11.98170 -11.38487 -11.28579 -11.14322 -10.97383 -10.75321 -10.46335 -10.34805 -10.04262 -9.67356 -9.45018 -9.17627 -8.74382 -7.97987 -7.41752 -6.50060 -4.57808 1.45275 1.79703 2.63285 3.08886 3.09805 3.17711 3.21092 3.33728 3.94418 4.12208 4.27200 4.36381 4.80963 4.86966 5.29041 5.39786 5.60796 5.65755 5.68452 5.72438 6.12047 6.13472 6.18968 6.30056 6.50699 6.69376 6.82763 6.85785 6.90212 7.06349 7.23143 7.48133 7.68450 8.04970 8.21554 8.59165 9.10395 10.57023 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.005543 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.871593 B = 5049.800037 C = 5739.489089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.054 0.946 11 C -0.036 4.036 12 Cl -0.240 7.240 13 O -0.305 6.305 14 C 0.210 3.790 15 C -0.207 4.207 16 C -0.052 4.052 17 C -0.190 4.190 18 C 0.165 3.835 19 C -0.193 4.193 20 C -0.099 4.099 21 C 0.530 3.470 22 O -0.518 6.518 23 N -0.659 5.659 24 H 0.273 0.727 25 H 0.134 0.866 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -8.587 2.488 8.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.150 3.850 10 H 0.072 0.928 11 C -0.099 4.099 12 Cl -0.214 7.214 13 O -0.218 6.218 14 C 0.161 3.839 15 C -0.226 4.226 16 C -0.071 4.071 17 C -0.211 4.211 18 C 0.068 3.932 19 C -0.197 4.197 20 C -0.138 4.138 21 C 0.319 3.681 22 O -0.394 6.394 23 N -0.302 5.302 24 H 0.083 0.917 25 H 0.152 0.848 26 H 0.093 0.907 27 H 0.162 0.838 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 0.275 -8.767 2.130 9.026 hybrid contribution -0.109 0.426 0.211 0.488 sum 0.166 -8.341 2.341 8.665 Atomic orbital electron populations 1.69782 1.05996 1.28181 1.48572 1.24967 0.95180 0.99839 0.93862 0.86179 0.79707 0.81306 0.78581 1.20128 1.20743 1.19363 1.21013 0.94392 0.87819 1.52819 0.90484 1.20601 0.87440 0.82798 0.94166 0.92825 1.25773 0.95447 0.86756 1.01926 1.98646 1.75789 1.47967 1.98993 1.86150 1.46526 1.21494 1.67618 1.18116 0.90862 0.85877 0.89042 1.21472 0.97925 1.00744 1.02495 1.20568 0.98180 0.91621 0.96713 1.20045 0.94131 1.00360 1.06580 1.17723 0.90280 0.87720 0.97446 1.18725 0.98911 0.93469 1.08581 1.20810 0.96059 0.93641 1.03323 1.20783 0.81205 0.89494 0.76652 1.90774 1.28084 1.63710 1.56819 1.43686 1.19959 1.15725 1.50780 0.91736 0.84808 0.90678 0.83775 0.85627 0.86419 0.86299 0.86375 0.75362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.05 11.29 55.43 0.63 -21.43 16 2 C 0.07 1.58 5.29 -17.82 -0.09 1.48 16 3 Si 0.92 19.17 29.54 -169.99 -5.02 14.15 16 4 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.52 -12.91 8.89 -34.44 -0.31 -13.21 16 8 H 0.08 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.20 4.64 2.19 -27.88 -0.06 4.58 16 10 H 0.05 1.27 5.39 -51.92 -0.28 0.99 16 11 C -0.04 -0.78 6.17 37.16 0.23 -0.55 16 12 Cl -0.24 -4.63 25.64 -51.86 -1.33 -5.96 16 13 O -0.31 -6.53 9.72 -19.42 -0.19 -6.72 16 14 C 0.21 3.94 5.96 -39.37 -0.23 3.70 16 15 C -0.21 -3.63 7.08 -39.34 -0.28 -3.91 16 16 C -0.05 -0.75 10.01 -39.69 -0.40 -1.15 16 17 C -0.19 -2.54 10.07 -39.24 -0.40 -2.93 16 18 C 0.16 2.40 7.11 -83.70 -0.60 1.81 16 19 C -0.19 -3.23 6.28 -104.23 -0.66 -3.88 16 20 C -0.10 -1.49 6.88 -28.48 -0.20 -1.68 16 21 C 0.53 7.97 8.71 -10.82 -0.09 7.87 16 22 O -0.52 -9.10 18.03 5.55 0.10 -9.00 16 23 N -0.66 -8.56 5.88 -9.71 -0.06 -8.61 16 24 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 25 H 0.13 3.09 5.95 -51.93 -0.31 2.79 16 26 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.14 2.72 5.13 -52.48 -0.27 2.45 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.12 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.41 4.16 8.96 -40.82 -0.37 3.79 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -26.45 288.16 -7.49 -33.94 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.88 Total: 7.17 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.08 Total: -7.87 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.57 Total: -30.04 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.09 Total: -15.73 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 17 Polarization: -4.63 SS G_CDS: -1.33 Total: -5.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.45 -7.49 -33.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234114647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.652 kcal (2) G-P(sol) polarization free energy of solvation -26.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds