Wall clock time and date at job start Tue Mar 31 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47341 * 270.00131 * 3 2 1 5 5 H 1.48500 * 109.47092 * 29.99961 * 3 2 1 6 6 H 1.48508 * 109.47253 * 149.99772 * 3 2 1 7 7 C 1.37881 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00376 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99732 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46870 * 299.99174 * 9 7 2 11 11 C 1.52999 * 109.47466 * 59.99185 * 9 7 2 12 12 Cl 1.80306 * 109.46911 * 185.00072 * 11 9 7 13 13 O 1.42901 * 109.47192 * 179.97438 * 9 7 2 14 14 C 1.35897 * 117.00450 * 146.70581 * 13 9 7 15 15 C 1.38943 * 120.09619 * 356.74713 * 14 13 9 16 16 C 1.38173 * 119.76350 * 179.97438 * 15 14 13 17 17 C 1.38014 * 120.43243 * 359.97438 * 16 15 14 18 18 C 1.39372 * 120.24859 * 0.04362 * 17 16 15 19 19 C 1.38111 * 120.10182 * 176.74682 * 14 13 9 20 20 C 1.51130 * 132.86613 * 0.02562 * 19 14 13 21 21 C 1.51396 * 104.06380 * 180.02562 * 20 19 14 22 22 O 1.21284 * 126.44720 * 180.02562 * 21 20 19 23 23 N 1.34373 * 107.09856 * 359.97438 * 21 20 19 24 24 H 0.97000 * 120.00532 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47324 * 304.99963 * 11 9 7 26 26 H 1.09001 * 109.46631 * 65.00275 * 11 9 7 27 27 H 1.08004 * 120.12198 * 0.02562 * 15 14 13 28 28 H 1.07993 * 119.78703 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.87389 * 180.02562 * 17 16 15 30 30 H 1.09003 * 110.51398 * 61.37592 * 20 19 14 31 31 H 1.09008 * 110.50992 * 298.66954 * 20 19 14 32 32 H 0.96998 * 123.87242 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8905 11 6 0.3717 -2.5805 -1.2489 12 17 -0.6388 -4.0720 -1.1766 13 8 2.1796 -3.5853 0.0005 14 6 1.8113 -4.7120 0.6652 15 6 0.6099 -4.7485 1.3621 16 6 0.2419 -5.8978 2.0351 17 6 1.0597 -7.0095 2.0189 18 6 2.2670 -6.9829 1.3232 19 6 2.6301 -5.8241 0.6500 20 6 3.9676 -6.1074 0.0057 21 6 4.2744 -7.5345 0.4073 22 8 5.2612 -8.1717 0.1052 23 7 3.2483 -7.9618 1.1623 24 1 -0.4851 0.8400 -0.0004 25 1 -0.2758 -1.7049 -1.2952 26 1 1.0037 -2.6124 -2.1364 27 1 -0.0346 -3.8819 1.3771 28 1 -0.6916 -5.9265 2.5772 29 1 0.7630 -7.9033 2.5477 30 1 4.7289 -5.4297 0.3921 31 1 3.8947 -6.0230 -1.0786 32 1 3.1953 -8.8494 1.5501 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234114647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:58 Heat of formation + Delta-G solvation = -66.849494 kcal Electronic energy + Delta-G solvation = -19566.622225 eV Core-core repulsion = 16324.691996 eV Total energy + Delta-G solvation = -3241.930229 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.061 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.41901 -40.42856 -38.70777 -36.62353 -36.25356 -35.30364 -32.95002 -31.20152 -30.04748 -28.60270 -27.23826 -24.44822 -22.72784 -22.43856 -21.91843 -19.42841 -18.73847 -17.92930 -17.42905 -17.09536 -16.85598 -16.17968 -16.02238 -15.81487 -15.21346 -14.88510 -14.57511 -14.14178 -14.00125 -13.74426 -13.53702 -13.39323 -13.00033 -12.81935 -12.79190 -12.49528 -12.17006 -11.99296 -11.78808 -11.41039 -11.26935 -11.09697 -10.77219 -10.53034 -9.23910 -8.73657 -8.34904 -6.49634 0.21053 0.56052 1.41552 1.42041 1.46021 1.55834 1.64611 1.97056 2.29592 2.70617 2.89371 3.00683 3.12892 3.59551 4.14409 4.22540 4.29208 4.38148 4.46745 4.48886 4.50949 4.55133 4.90234 4.98512 5.13241 5.24045 5.43760 5.54005 5.59481 5.63038 5.78362 5.88798 6.00629 6.50510 6.84372 6.94122 7.22847 8.71447 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.020450 B = 0.005543 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.871593 B = 5049.800037 C = 5739.489089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.212 3.788 10 H 0.039 0.961 11 C -0.027 4.027 12 Cl -0.219 7.219 13 O -0.324 6.324 14 C 0.177 3.823 15 C -0.222 4.222 16 C -0.049 4.049 17 C -0.169 4.169 18 C 0.166 3.834 19 C -0.206 4.206 20 C -0.102 4.102 21 C 0.536 3.464 22 O -0.544 6.544 23 N -0.641 5.641 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -9.972 3.322 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.084 0.916 9 C 0.157 3.843 10 H 0.056 0.944 11 C -0.090 4.090 12 Cl -0.193 7.193 13 O -0.238 6.238 14 C 0.130 3.870 15 C -0.241 4.241 16 C -0.067 4.067 17 C -0.190 4.190 18 C 0.069 3.931 19 C -0.210 4.210 20 C -0.141 4.141 21 C 0.325 3.675 22 O -0.422 6.422 23 N -0.285 5.285 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.142 0.858 28 H 0.174 0.826 29 H 0.177 0.823 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.118 -10.189 2.982 10.617 hybrid contribution -0.045 0.714 0.014 0.715 sum -0.163 -9.475 2.995 9.938 Atomic orbital electron populations 1.69862 1.06919 1.28928 1.48726 1.25635 0.95886 1.02366 0.93280 0.85315 0.78462 0.77879 0.78676 1.19567 1.20193 1.19503 1.21239 0.94138 0.89415 1.53670 0.91628 1.20303 0.87338 0.82848 0.93834 0.94367 1.25407 0.95188 0.87051 1.01360 1.98635 1.75115 1.46572 1.99000 1.86078 1.46529 1.22195 1.68948 1.18378 0.92335 0.85700 0.90619 1.21427 0.97516 1.01453 1.03707 1.20925 0.99377 0.90608 0.95792 1.20468 0.92616 1.01169 1.04772 1.17858 0.90893 0.87176 0.97146 1.18900 0.99350 0.93660 1.09084 1.20847 0.95626 0.94002 1.03582 1.20630 0.81103 0.89187 0.76564 1.90768 1.29196 1.64224 1.57986 1.43470 1.18825 1.16202 1.49956 0.91498 0.86514 0.90844 0.85766 0.82601 0.82297 0.85954 0.86031 0.73336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.69 11.29 21.45 0.24 -45.45 16 2 C 0.03 1.47 5.29 84.66 0.45 1.92 16 3 Si 0.97 39.46 29.54 68.60 2.03 41.48 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -27.81 8.89 25.60 0.23 -27.59 16 8 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 9 C 0.21 9.93 2.19 29.85 0.07 10.00 16 10 H 0.04 1.90 5.39 -2.38 -0.01 1.89 16 11 C -0.03 -1.19 6.17 71.98 0.44 -0.75 16 12 Cl -0.22 -8.45 25.64 -2.72 -0.07 -8.52 16 13 O -0.32 -14.29 9.72 -92.39 -0.90 -15.18 16 14 C 0.18 6.66 5.96 22.41 0.13 6.79 16 15 C -0.22 -7.66 7.08 22.42 0.16 -7.50 16 16 C -0.05 -1.26 10.01 22.20 0.22 -1.04 16 17 C -0.17 -3.85 10.07 22.49 0.23 -3.62 16 18 C 0.17 4.39 7.11 38.33 0.27 4.66 16 19 C -0.21 -6.70 6.28 -19.61 -0.12 -6.82 16 20 C -0.10 -2.98 6.88 29.46 0.20 -2.78 16 21 C 0.54 15.28 8.71 87.94 0.77 16.05 16 22 O -0.54 -18.45 18.03 -3.04 -0.05 -18.50 16 23 N -0.64 -14.85 5.88 -303.24 -1.78 -16.64 16 24 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 25 H 0.12 5.55 5.95 -2.39 -0.01 5.54 16 26 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.12 4.78 5.13 -2.91 -0.01 4.76 16 28 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 29 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.12 3.48 8.14 -2.39 -0.02 3.46 16 31 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 32 H 0.43 7.15 8.96 -92.71 -0.83 6.31 16 Total: -1.00 -57.09 288.16 2.86 -54.24 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.35 Total: 19.24 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 3.04 Total: -10.68 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -1.54 Total: -62.08 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.95 Total: -33.69 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 17 Polarization: -8.45 SS G_CDS: -0.07 Total: -8.52 kcal Total: -57.09 2.86 -54.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234114647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -57.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds