Wall clock time and date at job start Tue Mar 31 2020 05:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48506 * 109.47092 * 240.00013 * 3 2 1 5 5 H 1.48500 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 119.99798 * 3 2 1 7 7 C 1.40021 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 193.77908 * 7 2 1 9 9 C 1.40680 * 120.00282 * 13.77699 * 7 2 1 10 10 C 1.41325 * 121.37595 * 24.34893 * 9 7 2 11 11 C 1.36222 * 119.05117 * 179.97438 * 10 9 7 12 12 N 1.32171 * 122.21353 * 359.97438 * 11 10 9 13 13 C 1.31450 * 123.19508 * 359.71476 * 12 11 10 14 14 C 1.39829 * 120.49195 * 0.55645 * 13 12 11 15 15 C 1.47251 * 121.10012 * 179.75032 * 14 13 12 16 16 C 1.34118 * 122.87825 * 64.67526 * 15 14 13 17 17 S 1.75240 * 111.20692 * 180.02562 * 16 15 14 18 18 C 1.75890 * 92.47684 * 0.02562 * 17 16 15 19 19 C 1.39865 * 130.14193 * 179.97438 * 18 17 16 20 20 C 1.37530 * 120.38377 * 179.97438 * 19 18 17 21 21 C 1.38745 * 120.14557 * 0.06907 * 20 19 18 22 22 C 1.37243 * 120.33813 * 359.97234 * 21 20 19 23 23 C 1.39442 * 110.10187 * 359.97438 * 18 17 16 24 24 H 0.97004 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.47705 * 359.95387 * 10 9 7 26 26 H 1.08000 * 118.89819 * 179.97438 * 11 10 9 27 27 H 1.08008 * 119.75889 * 180.27844 * 13 12 11 28 28 H 1.07997 * 124.39808 * 0.02562 * 16 15 14 29 29 H 1.07992 * 119.80532 * 0.04369 * 19 18 17 30 30 H 1.08002 * 119.92868 * 180.02562 * 20 19 18 31 31 H 1.08002 * 119.82809 * 180.24853 * 21 20 19 32 32 H 1.08005 * 119.79704 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2125 5 1 1.2769 2.7464 -0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0079 -1.2126 0.0005 8 1 3.0646 -1.2260 0.2233 9 6 1.3350 -2.4136 -0.2890 10 6 0.1472 -2.4253 -1.0548 11 6 -0.4653 -3.6155 -1.3073 12 7 0.0138 -4.7633 -0.8603 13 6 1.1136 -4.8548 -0.1461 14 6 1.8384 -3.7074 0.1905 15 6 3.0691 -3.7938 0.9945 16 6 4.1782 -4.4126 0.5637 17 16 5.4547 -4.3326 1.7617 18 6 4.4476 -3.4291 2.8856 19 6 4.7372 -2.9412 4.1640 20 6 3.7856 -2.2499 4.8767 21 6 2.5284 -2.0324 4.3317 22 6 2.2248 -2.5039 3.0791 23 6 3.1863 -3.2131 2.3317 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2690 -1.5037 -1.4342 26 1 -1.3731 -3.6215 -1.8925 27 1 1.4575 -5.8229 0.1870 28 1 4.2725 -4.8973 -0.3968 29 1 5.7140 -3.1074 4.5934 30 1 4.0173 -1.8761 5.8631 31 1 1.7863 -1.4853 4.8943 32 1 1.2435 -2.3293 2.6631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238893721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:33 Heat of formation + Delta-G solvation = 61.890534 kcal Electronic energy + Delta-G solvation = -18712.901425 eV Core-core repulsion = 15921.739503 eV Total energy + Delta-G solvation = -2791.161922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.13051 -37.96074 -34.78751 -34.27974 -30.78977 -30.28462 -29.77286 -28.30397 -26.07543 -23.42779 -22.24348 -21.57931 -21.44658 -18.90321 -17.68270 -17.50655 -15.73939 -15.25616 -14.96933 -14.73815 -14.52495 -14.33616 -13.63655 -13.23523 -13.03891 -12.79331 -12.46259 -12.24349 -11.89592 -11.55599 -11.46945 -11.33577 -11.16880 -10.83278 -10.71730 -10.38783 -10.22954 -9.82831 -9.57782 -9.08658 -8.11300 -8.05690 -7.94983 -7.69570 -7.13236 -6.88459 -4.74083 1.25057 1.67527 2.04637 2.35290 2.55900 2.73530 2.92452 2.96005 3.03663 3.18030 3.72998 4.22375 4.52321 5.13386 5.21749 5.34340 5.51545 5.68453 5.74651 5.84826 5.94214 6.16235 6.21350 6.33195 6.51719 6.58632 6.71489 6.79778 6.81729 6.92271 7.03343 7.16546 7.25203 7.33466 7.44110 7.74154 7.95612 8.32365 8.54525 8.62396 9.60823 9.85226 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.008590 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.432064 B = 3258.867938 C = 4401.088934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.150 3.850 10 C -0.219 4.219 11 C 0.091 3.909 12 N -0.586 5.586 13 C 0.136 3.864 14 C -0.237 4.237 15 C 0.036 3.964 16 C -0.220 4.220 17 S 0.037 5.963 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.044 4.044 23 C -0.050 4.050 24 H 0.287 0.713 25 H 0.130 0.870 26 H 0.115 0.885 27 H 0.120 0.880 28 H 0.160 0.840 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -0.430 5.677 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.453 4.453 8 H 0.101 0.899 9 C 0.142 3.858 10 C -0.241 4.241 11 C -0.057 4.057 12 N -0.301 5.301 13 C -0.022 4.022 14 C -0.245 4.245 15 C 0.025 3.975 16 C -0.353 4.353 17 S 0.300 5.700 18 C -0.251 4.251 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.063 4.063 23 C -0.058 4.058 24 H 0.098 0.902 25 H 0.147 0.853 26 H 0.133 0.867 27 H 0.138 0.862 28 H 0.178 0.822 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.810 -1.606 5.408 8.843 hybrid contribution -0.599 2.161 0.109 2.245 sum 6.211 0.555 5.518 8.326 Atomic orbital electron populations 1.69770 1.07680 1.30077 1.32193 1.26026 0.94818 1.01722 0.91798 0.86303 0.80290 0.79552 0.80571 1.18450 1.19931 1.18453 1.19453 0.97058 0.90218 1.38613 0.89947 1.18738 0.90151 0.90373 0.86562 1.21915 0.99907 0.98300 1.03986 1.21596 0.97934 0.88791 0.97395 1.67048 1.15736 1.29100 1.18201 1.22072 0.90799 0.95473 0.93841 1.20146 0.99310 0.94927 1.10105 1.18383 0.93605 0.94346 0.91167 1.25239 0.95736 1.10974 1.03313 1.83578 1.17230 1.59516 1.09638 1.22518 0.97810 1.05596 0.99166 1.20319 0.99446 1.00015 0.92360 1.20901 0.93552 0.99071 0.99427 1.20921 0.96990 1.01655 0.96009 1.21121 0.99184 0.93403 0.92609 1.19291 0.92874 0.99669 0.93936 0.90178 0.85280 0.86690 0.86229 0.82247 0.86391 0.86024 0.86029 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.11 10.79 55.55 0.60 -17.51 16 2 C 0.08 1.79 5.26 -17.33 -0.09 1.70 16 3 Si 0.91 17.63 29.58 -169.99 -5.03 12.60 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.42 -10.35 8.13 -37.99 -0.31 -10.66 16 8 H 0.08 2.05 7.45 -52.49 -0.39 1.66 16 9 C 0.15 3.74 5.77 -104.30 -0.60 3.13 16 10 C -0.22 -5.39 8.74 -39.13 -0.34 -5.73 16 11 C 0.09 2.14 11.04 -18.13 -0.20 1.94 16 12 N -0.59 -14.02 10.26 -13.35 -0.14 -14.15 16 13 C 0.14 3.10 10.99 -17.12 -0.19 2.91 16 14 C -0.24 -5.50 5.55 -102.14 -0.57 -6.07 16 15 C 0.04 0.77 4.60 -104.47 -0.48 0.29 16 16 C -0.22 -4.11 10.87 29.28 0.32 -3.79 16 17 S 0.04 0.61 23.21 -107.50 -2.50 -1.88 16 18 C -0.14 -2.45 6.45 -38.52 -0.25 -2.70 16 19 C -0.10 -1.53 10.06 -39.23 -0.39 -1.92 16 20 C -0.11 -1.59 10.03 -39.65 -0.40 -1.98 16 21 C -0.14 -2.20 10.01 -39.76 -0.40 -2.60 16 22 C -0.04 -0.85 9.56 -38.93 -0.37 -1.23 16 23 C -0.05 -1.01 5.72 -105.21 -0.60 -1.61 16 24 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 25 H 0.13 3.21 6.14 -52.48 -0.32 2.89 16 26 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 27 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 28 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 29 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.13 2.83 8.05 -52.48 -0.42 2.40 16 LS Contribution 296.22 15.07 4.46 4.46 Total: -1.00 -26.27 296.22 -10.28 -36.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -2.81 Total: 8.26 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -4.87 Total: -28.32 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.46 Total: -31.66 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.50 Total: -1.88 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.27 -10.28 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238893721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.434 kcal (2) G-P(sol) polarization free energy of solvation -26.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds