Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48506 * 109.47092 * 240.00013 * 3 2 1 5 5 H 1.48500 * 109.47011 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47247 * 119.99798 * 3 2 1 7 7 C 1.40021 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 193.77908 * 7 2 1 9 9 C 1.40680 * 120.00282 * 13.77699 * 7 2 1 10 10 C 1.41325 * 121.37595 * 24.34893 * 9 7 2 11 11 C 1.36222 * 119.05117 * 179.97438 * 10 9 7 12 12 N 1.32171 * 122.21353 * 359.97438 * 11 10 9 13 13 C 1.31450 * 123.19508 * 359.71476 * 12 11 10 14 14 C 1.39829 * 120.49195 * 0.55645 * 13 12 11 15 15 C 1.47251 * 121.10012 * 179.75032 * 14 13 12 16 16 C 1.34118 * 122.87825 * 64.67526 * 15 14 13 17 17 S 1.75240 * 111.20692 * 180.02562 * 16 15 14 18 18 C 1.75890 * 92.47684 * 0.02562 * 17 16 15 19 19 C 1.39865 * 130.14193 * 179.97438 * 18 17 16 20 20 C 1.37530 * 120.38377 * 179.97438 * 19 18 17 21 21 C 1.38745 * 120.14557 * 0.06907 * 20 19 18 22 22 C 1.37243 * 120.33813 * 359.97234 * 21 20 19 23 23 C 1.39442 * 110.10187 * 359.97438 * 18 17 16 24 24 H 0.97004 * 119.99582 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.47705 * 359.95387 * 10 9 7 26 26 H 1.08000 * 118.89819 * 179.97438 * 11 10 9 27 27 H 1.08008 * 119.75889 * 180.27844 * 13 12 11 28 28 H 1.07997 * 124.39808 * 0.02562 * 16 15 14 29 29 H 1.07992 * 119.80532 * 0.04369 * 19 18 17 30 30 H 1.08002 * 119.92868 * 180.02562 * 20 19 18 31 31 H 1.08002 * 119.82809 * 180.24853 * 21 20 19 32 32 H 1.08005 * 119.79704 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0957 1.6964 -1.2125 5 1 1.2769 2.7464 -0.0006 6 1 3.0956 1.6964 1.2125 7 6 2.0079 -1.2126 0.0005 8 1 3.0646 -1.2260 0.2233 9 6 1.3350 -2.4136 -0.2890 10 6 0.1472 -2.4253 -1.0548 11 6 -0.4653 -3.6155 -1.3073 12 7 0.0138 -4.7633 -0.8603 13 6 1.1136 -4.8548 -0.1461 14 6 1.8384 -3.7074 0.1905 15 6 3.0691 -3.7938 0.9945 16 6 4.1782 -4.4126 0.5637 17 16 5.4547 -4.3326 1.7617 18 6 4.4476 -3.4291 2.8856 19 6 4.7372 -2.9412 4.1640 20 6 3.7856 -2.2499 4.8767 21 6 2.5284 -2.0324 4.3317 22 6 2.2248 -2.5039 3.0791 23 6 3.1863 -3.2131 2.3317 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2690 -1.5037 -1.4342 26 1 -1.3731 -3.6215 -1.8925 27 1 1.4575 -5.8229 0.1870 28 1 4.2725 -4.8973 -0.3968 29 1 5.7140 -3.1074 4.5934 30 1 4.0173 -1.8761 5.8631 31 1 1.7863 -1.4853 4.8943 32 1 1.2435 -2.3293 2.6631 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238893721.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = 50.477530 kcal Electronic energy + Delta-G solvation = -18713.396330 eV Core-core repulsion = 15921.739503 eV Total energy + Delta-G solvation = -2791.656827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59162 -39.63395 -36.26831 -36.04750 -32.42604 -31.86731 -31.31657 -29.81351 -27.88570 -24.96687 -23.60752 -23.28200 -23.07120 -20.44792 -19.47930 -18.86128 -17.50042 -16.71567 -16.42600 -16.22335 -16.14366 -15.89528 -15.18888 -14.64115 -14.46158 -14.42667 -14.15356 -13.98710 -13.35556 -13.25297 -13.09348 -12.85745 -12.63454 -12.29534 -12.09652 -11.97936 -11.65538 -11.51000 -11.31064 -10.48493 -9.91664 -9.84022 -9.50853 -9.34101 -8.80157 -8.35837 -6.58764 -0.13345 0.34671 0.66051 0.71350 0.97930 1.11598 1.33247 1.43543 1.49655 1.54926 2.11323 2.71753 2.87534 3.60766 3.84978 3.95561 4.01279 4.15324 4.39195 4.44495 4.47703 4.56806 4.76617 4.90907 4.93403 5.01608 5.13008 5.17651 5.29216 5.40535 5.45341 5.55342 5.59735 5.72964 5.89912 6.05006 6.12061 6.47269 6.70955 6.78530 7.75363 8.12857 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.013054 B = 0.008590 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.432064 B = 3258.867938 C = 4401.088934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.045 3.955 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.438 4.438 8 H 0.071 0.929 9 C 0.124 3.876 10 C -0.239 4.239 11 C 0.086 3.914 12 N -0.598 5.598 13 C 0.121 3.879 14 C -0.234 4.234 15 C 0.001 3.999 16 C -0.222 4.222 17 S 0.098 5.902 18 C -0.158 4.158 19 C -0.095 4.095 20 C -0.098 4.098 21 C -0.131 4.131 22 C -0.076 4.076 23 C -0.076 4.076 24 H 0.296 0.704 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.169 0.831 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 0.248 7.536 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.089 0.911 9 C 0.116 3.884 10 C -0.262 4.262 11 C -0.063 4.063 12 N -0.313 5.313 13 C -0.034 4.034 14 C -0.242 4.242 15 C -0.011 4.011 16 C -0.355 4.355 17 S 0.362 5.638 18 C -0.273 4.273 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.151 4.151 22 C -0.096 4.096 23 C -0.084 4.084 24 H 0.107 0.893 25 H 0.139 0.861 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.186 0.814 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.161 0.839 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.969 -0.953 7.273 11.587 hybrid contribution -1.222 1.900 -0.379 2.290 sum 7.747 0.947 6.893 10.413 Atomic orbital electron populations 1.69797 1.08800 1.31392 1.32019 1.26737 0.95486 1.04273 0.90986 0.85368 0.79165 0.75933 0.80256 1.18417 1.18319 1.18468 1.19456 0.96548 0.91084 1.39627 0.91108 1.19089 0.90707 0.91550 0.87065 1.21915 1.00721 0.98420 1.05158 1.21908 0.98566 0.88435 0.97403 1.67095 1.16266 1.29162 1.18817 1.22429 0.90701 0.96421 0.93893 1.20398 1.00139 0.94340 1.09299 1.18443 0.93651 0.96843 0.92168 1.25485 0.96306 1.09325 1.04364 1.83249 1.14780 1.58353 1.07458 1.22887 0.97355 1.06387 1.00650 1.20821 1.01124 0.98634 0.91131 1.21384 0.92042 0.97531 1.00870 1.21243 0.98588 1.00572 0.94670 1.20983 0.98007 0.96038 0.94536 1.19332 0.94288 1.00885 0.93883 0.89276 0.86125 0.84473 0.84270 0.81399 0.82890 0.81543 0.83914 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.26 10.79 21.84 0.24 -38.02 16 2 C 0.04 2.10 5.26 85.28 0.45 2.55 16 3 Si 0.97 36.10 29.58 68.60 2.03 38.12 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.44 -22.23 8.13 23.30 0.19 -22.04 16 8 H 0.07 3.66 7.45 -2.91 -0.02 3.64 16 9 C 0.12 6.48 5.77 -19.66 -0.11 6.36 16 10 C -0.24 -12.34 8.74 22.56 0.20 -12.15 16 11 C 0.09 4.15 11.04 84.17 0.93 5.08 16 12 N -0.60 -29.34 10.26 -196.14 -2.01 -31.35 16 13 C 0.12 5.73 10.99 85.13 0.94 6.67 16 14 C -0.23 -11.33 5.55 -18.26 -0.10 -11.43 16 15 C 0.00 0.04 4.60 -19.76 -0.09 -0.05 16 16 C -0.22 -8.22 10.87 66.88 0.73 -7.49 16 17 S 0.10 3.00 23.21 -56.49 -1.31 1.69 16 18 C -0.16 -5.41 6.45 22.95 0.15 -5.26 16 19 C -0.09 -2.57 10.06 22.50 0.23 -2.35 16 20 C -0.10 -2.47 10.03 22.22 0.22 -2.25 16 21 C -0.13 -4.05 10.01 22.16 0.22 -3.83 16 22 C -0.08 -3.04 9.56 22.69 0.22 -2.82 16 23 C -0.08 -3.11 5.72 -20.25 -0.12 -3.23 16 24 H 0.30 12.77 8.30 -92.71 -0.77 12.00 16 25 H 0.12 6.30 6.14 -2.91 -0.02 6.28 16 26 H 0.14 5.83 8.06 -2.91 -0.02 5.81 16 27 H 0.14 5.83 8.06 -2.91 -0.02 5.81 16 28 H 0.17 5.73 8.06 -2.91 -0.02 5.70 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.09 4.40 8.05 -2.91 -0.02 4.37 16 Total: -1.00 -58.87 296.22 4.13 -54.74 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 1.15 Total: 27.07 kcal Atomic # 6 Polarization: -56.29 SS G_CDS: 4.04 Total: -52.25 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.78 Total: -69.37 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.12 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.31 Total: 1.69 kcal Total: -58.87 4.13 -54.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238893721.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.214 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds