Wall clock time and date at job start Tue Mar 31 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47113 * 240.00141 * 3 2 1 5 5 H 1.48504 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47316 * 119.99878 * 3 2 1 7 7 C 1.39979 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99564 * 197.51987 * 7 2 1 9 9 C 1.40986 * 120.00161 * 17.52883 * 7 2 1 10 10 C 1.41346 * 120.54592 * 23.87060 * 9 7 2 11 11 C 1.36520 * 118.42384 * 180.26549 * 10 9 7 12 12 C 1.40030 * 119.46602 * 359.75321 * 11 10 9 13 13 C 1.47699 * 119.46473 * 180.02562 * 12 11 10 14 14 C 1.39101 * 120.00703 * 359.97438 * 13 12 11 15 15 C 1.38348 * 120.01685 * 179.97438 * 14 13 12 16 16 C 1.37394 * 120.64389 * 0.02562 * 15 14 13 17 17 C 1.41202 * 120.67156 * 359.97438 * 16 15 14 18 18 C 1.45449 * 129.23931 * 179.97438 * 17 16 15 19 19 C 1.31822 * 114.89344 * 180.02562 * 18 17 16 20 20 S 1.75303 * 111.37940 * 359.97438 * 19 18 17 21 21 C 1.39615 * 118.93735 * 359.74734 * 17 16 15 22 22 N 1.33117 * 121.07548 * 359.97438 * 12 11 10 23 23 C 1.31232 * 121.71453 * 0.02562 * 22 12 11 24 24 H 0.96998 * 120.00122 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.78841 * 0.02562 * 10 9 7 26 26 H 1.08004 * 120.26806 * 179.72835 * 11 10 9 27 27 H 1.08005 * 119.98984 * 359.95723 * 14 13 12 28 28 H 1.08007 * 119.67837 * 180.02562 * 15 14 13 29 29 H 1.07999 * 119.66871 * 179.97438 * 16 15 14 30 30 H 1.07993 * 122.55496 * 0.04504 * 18 17 16 31 31 H 1.08002 * 124.30825 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.79793 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0080 -1.2123 0.0005 8 1 3.0505 -1.2338 0.2821 9 6 1.3521 -2.4051 -0.3667 10 6 0.2048 -2.3694 -1.1914 11 6 -0.3993 -3.5499 -1.5158 12 6 0.1322 -4.7515 -1.0315 13 6 -0.5211 -6.0287 -1.3829 14 6 -1.6552 -6.0315 -2.1883 15 6 -2.2670 -7.2278 -2.5180 16 6 -1.7659 -8.4211 -2.0568 17 6 -0.6162 -8.4510 -1.2375 18 6 0.0663 -9.5938 -0.6512 19 6 1.1251 -9.2951 0.0750 20 16 1.4028 -7.5647 0.1185 21 6 0.0088 -7.2473 -0.9063 22 7 1.2173 -4.7616 -0.2605 23 6 1.8330 -3.6533 0.0785 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1869 -1.4303 -1.5532 26 1 -1.2803 -3.5570 -2.1405 27 1 -2.0584 -5.0995 -2.5561 28 1 -3.1471 -7.2237 -3.1440 29 1 -2.2562 -9.3456 -2.3235 30 1 -0.2686 -10.6097 -0.7998 31 1 1.7428 -10.0237 0.5791 32 1 2.7109 -3.6974 0.7060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241399963.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:48 Heat of formation + Delta-G solvation = 60.842916 kcal Electronic energy + Delta-G solvation = -18017.675856 eV Core-core repulsion = 15226.468506 eV Total energy + Delta-G solvation = -2791.207350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20151 -38.09109 -34.90544 -34.20538 -31.55859 -30.88627 -29.23116 -28.64543 -25.64071 -23.39792 -22.70175 -21.62943 -20.76084 -19.68839 -17.61978 -17.39636 -15.74447 -15.46119 -15.38357 -14.64515 -14.39561 -14.04181 -13.77105 -13.41190 -13.10016 -12.82939 -12.40742 -12.04594 -11.92208 -11.80014 -11.50029 -11.33825 -11.13195 -10.86361 -10.76256 -10.58132 -10.11407 -9.84309 -9.64683 -9.14450 -8.44586 -8.19037 -8.11636 -7.76608 -7.14622 -6.88226 -4.64152 1.14077 1.59276 2.21735 2.42219 2.75998 2.78961 2.87513 2.89849 2.91870 3.16483 3.66616 4.13649 4.53165 4.98821 5.21067 5.29430 5.53773 5.55566 5.66813 5.72766 5.98396 6.12072 6.17659 6.33972 6.38651 6.53293 6.56827 6.70964 6.78457 6.88178 6.91260 7.02354 7.13042 7.31436 7.59491 7.67410 7.78283 8.21620 8.40511 8.51136 9.43271 9.77593 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.031588 B = 0.004425 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.205906 B = 6326.172738 C = 7135.482909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.428 4.428 8 H 0.089 0.911 9 C 0.071 3.929 10 C -0.146 4.146 11 C -0.114 4.114 12 C -0.021 4.021 13 C 0.059 3.941 14 C -0.134 4.134 15 C -0.109 4.109 16 C -0.118 4.118 17 C -0.077 4.077 18 C -0.133 4.133 19 C -0.235 4.235 20 S 0.168 5.832 21 C -0.138 4.138 22 N -0.444 5.444 23 C -0.012 4.012 24 H 0.289 0.711 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.451 -8.100 -2.235 8.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.107 0.893 9 C 0.066 3.934 10 C -0.170 4.170 11 C -0.134 4.134 12 C -0.154 4.154 13 C 0.054 3.946 14 C -0.156 4.156 15 C -0.129 4.129 16 C -0.138 4.138 17 C -0.086 4.086 18 C -0.164 4.164 19 C -0.370 4.370 20 S 0.434 5.566 21 C -0.254 4.254 22 N -0.151 5.151 23 C -0.178 4.178 24 H 0.100 0.900 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.173 0.827 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.216 -7.871 -1.181 7.962 hybrid contribution -1.186 0.708 -0.929 1.664 sum -1.402 -7.162 -2.109 7.597 Atomic orbital electron populations 1.69783 1.07936 1.30426 1.31292 1.26119 0.94878 1.02104 0.91908 0.86185 0.80143 0.79128 0.80445 1.18400 1.19970 1.18506 1.19688 0.98336 0.90941 1.36620 0.89344 1.18620 0.91995 0.93643 0.89169 1.21313 0.98740 0.97019 0.99952 1.21270 0.99111 0.93149 0.99886 1.18732 0.98198 0.90641 1.07830 1.18099 0.92939 0.89654 0.93873 1.21023 0.96155 0.98158 1.00302 1.20684 0.99768 0.92157 1.00306 1.20716 0.95870 0.97745 0.99489 1.19243 0.97278 0.91419 1.00621 1.20762 0.96848 0.98120 1.00715 1.25652 1.02486 1.03523 1.05298 1.84911 1.27269 0.94270 1.50145 1.22737 1.01457 0.95966 1.05265 1.66563 1.06606 1.32087 1.09838 1.22418 1.02548 0.87593 1.05213 0.89972 0.85470 0.87886 0.85554 0.86246 0.86676 0.85163 0.82689 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.17 10.92 55.55 0.61 -17.56 16 2 C 0.07 1.62 5.17 -17.33 -0.09 1.53 16 3 Si 0.92 16.83 29.59 -169.99 -5.03 11.80 16 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.43 -10.30 9.06 -37.89 -0.34 -10.65 16 8 H 0.09 2.00 7.91 -52.48 -0.41 1.58 16 9 C 0.07 1.77 5.59 -106.64 -0.60 1.18 16 10 C -0.15 -3.58 8.74 -39.02 -0.34 -3.92 16 11 C -0.11 -2.61 9.37 -39.53 -0.37 -2.98 16 12 C -0.02 -0.50 6.74 -82.77 -0.56 -1.05 16 13 C 0.06 1.24 5.90 -104.60 -0.62 0.63 16 14 C -0.13 -2.40 9.40 -39.22 -0.37 -2.77 16 15 C -0.11 -1.67 9.98 -39.85 -0.40 -2.07 16 16 C -0.12 -1.82 10.09 -38.76 -0.39 -2.21 16 17 C -0.08 -1.35 6.04 -105.39 -0.64 -1.99 16 18 C -0.13 -2.01 10.39 -38.61 -0.40 -2.41 16 19 C -0.24 -3.53 11.02 28.84 0.32 -3.21 16 20 S 0.17 3.11 21.04 -107.50 -2.26 0.85 16 21 C -0.14 -2.77 6.32 -37.96 -0.24 -3.01 16 22 N -0.44 -10.69 7.83 -9.13 -0.07 -10.76 16 23 C -0.01 -0.28 10.97 -16.77 -0.18 -0.47 16 24 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 25 H 0.13 3.14 6.20 -52.49 -0.33 2.81 16 26 H 0.10 2.06 6.13 -52.48 -0.32 1.74 16 27 H 0.13 2.07 6.11 -52.48 -0.32 1.74 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.13 2.90 8.06 -52.49 -0.42 2.47 16 LS Contribution 290.42 15.07 4.38 4.38 Total: -1.00 -26.97 290.42 -10.23 -37.20 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -2.63 Total: 7.50 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -5.22 Total: -33.39 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.54 Total: -28.32 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.26 Total: 0.85 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.97 -10.23 -37.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241399963.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.038 kcal (2) G-P(sol) polarization free energy of solvation -26.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds