Wall clock time and date at job start Tue Mar 31 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30790 * 1 3 3 Si 1.86800 * 120.00117 * 2 1 4 4 H 1.48501 * 109.47153 * 270.57347 * 3 2 1 5 5 H 1.48501 * 109.47055 * 30.57526 * 3 2 1 6 6 H 1.48507 * 109.46980 * 150.57595 * 3 2 1 7 7 C 1.40040 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00282 * 342.78935 * 7 2 1 9 9 C 1.40805 * 119.99680 * 162.78941 * 7 2 1 10 10 C 1.41137 * 120.72741 * 330.97887 * 9 7 2 11 11 C 1.36856 * 118.40170 * 180.29099 * 10 9 7 12 12 C 1.38917 * 119.82535 * 359.72609 * 11 10 9 13 13 N 1.31689 * 121.52127 * 0.02562 * 12 11 10 14 14 C 1.32698 * 121.70999 * 359.97438 * 13 12 11 15 15 C 1.47539 * 120.00662 * 180.02562 * 14 13 12 16 16 C 1.39184 * 120.01639 * 130.14656 * 15 14 13 17 17 C 1.38321 * 120.00316 * 180.27768 * 16 15 14 18 18 C 1.37413 * 120.65585 * 359.97438 * 17 16 15 19 19 C 1.41201 * 120.69260 * 0.02562 * 18 17 16 20 20 C 1.45447 * 129.24560 * 180.02562 * 19 18 17 21 21 C 1.31812 * 114.89778 * 179.97438 * 20 19 18 22 22 S 1.75305 * 111.37811 * 0.02562 * 21 20 19 23 23 C 1.39605 * 118.93293 * 359.97438 * 19 18 17 24 24 H 0.96999 * 120.00398 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.79606 * 0.02562 * 10 9 7 26 26 H 1.08002 * 120.08512 * 179.75514 * 11 10 9 27 27 H 1.08006 * 119.23672 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.99179 * 0.27780 * 16 15 14 29 29 H 1.08005 * 119.67048 * 180.02562 * 17 16 15 30 30 H 1.08006 * 119.65612 * 180.02562 * 18 17 16 31 31 H 1.08005 * 122.54998 * 359.97438 * 20 19 18 32 32 H 1.07998 * 124.31335 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4773 2.0534 -1.4000 5 1 1.4455 2.6491 0.7122 6 1 3.5456 1.4366 0.6878 7 6 2.0081 -1.2128 -0.0005 8 1 1.5044 -2.1273 0.2758 9 6 3.3688 -1.2399 -0.3614 10 6 3.8943 -0.2915 -1.2649 11 6 5.2224 -0.3656 -1.5871 12 6 6.0163 -1.3554 -1.0217 13 7 5.5219 -2.2348 -0.1753 14 6 4.2433 -2.2190 0.1794 15 6 3.7292 -3.2221 1.1314 16 6 2.9799 -2.8175 2.2322 17 6 2.5029 -3.7577 3.1277 18 6 2.7604 -5.0948 2.9431 19 6 3.5174 -5.5369 1.8363 20 6 3.8973 -6.8904 1.4629 21 6 4.6144 -6.9814 0.3607 22 16 4.9049 -5.4031 -0.3449 23 6 4.0017 -4.5930 0.9288 24 1 -0.4851 0.8400 0.0004 25 1 3.2627 0.4716 -1.6950 26 1 5.6521 0.3439 -2.2787 27 1 7.0633 -1.4049 -1.2823 28 1 2.7709 -1.7693 2.3873 29 1 1.9216 -3.4377 3.9799 30 1 2.3797 -5.8151 3.6521 31 1 3.6134 -7.7550 2.0445 32 1 4.9769 -7.9100 -0.0549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241400300.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:49 Heat of formation + Delta-G solvation = 67.167560 kcal Electronic energy + Delta-G solvation = -18662.759897 eV Core-core repulsion = 15871.826804 eV Total energy + Delta-G solvation = -2790.933093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27678 -38.18093 -34.74297 -34.12073 -31.86521 -31.43416 -29.06908 -28.55942 -25.67938 -23.45848 -22.75286 -21.73480 -20.74438 -19.77514 -17.63998 -17.41827 -16.11756 -15.52804 -15.08512 -14.78670 -14.45105 -14.30701 -13.62407 -13.42509 -13.13032 -13.01062 -12.50125 -12.28424 -12.12069 -11.93099 -11.51345 -11.15192 -10.97234 -10.81691 -10.69867 -10.40584 -10.07085 -9.93278 -9.62030 -9.10744 -8.55720 -8.27466 -7.98450 -7.87020 -7.20619 -6.97679 -4.70607 1.25413 1.68512 2.11850 2.31863 2.52346 2.64886 2.85200 2.93060 3.05070 3.13723 3.75313 4.28001 4.39311 5.00268 5.19959 5.22522 5.50729 5.60568 5.72746 5.83160 5.91320 6.02689 6.12422 6.23840 6.29739 6.35362 6.50825 6.59800 6.73087 6.81729 6.97794 7.02588 7.13686 7.35519 7.38341 7.55070 7.68886 8.07852 8.30997 8.48122 9.29536 9.78580 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.007192 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.233624 B = 3892.495903 C = 4849.777362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.246 1.246 7 C -0.419 4.419 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.211 4.211 11 C -0.117 4.117 12 C -0.040 4.040 13 N -0.435 5.435 14 C 0.020 3.980 15 C 0.056 3.944 16 C -0.080 4.080 17 C -0.118 4.118 18 C -0.101 4.101 19 C -0.089 4.089 20 C -0.122 4.122 21 C -0.216 4.216 22 S 0.106 5.894 23 C -0.119 4.119 24 H 0.290 0.710 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.127 0.873 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -5.536 2.626 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.139 4.139 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.446 4.446 8 H 0.120 0.880 9 C 0.060 3.940 10 C -0.236 4.236 11 C -0.137 4.137 12 C -0.199 4.199 13 N -0.142 5.142 14 C -0.121 4.121 15 C 0.051 3.949 16 C -0.102 4.102 17 C -0.138 4.138 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.153 4.153 21 C -0.350 4.350 22 S 0.370 5.630 23 C -0.235 4.235 24 H 0.101 0.899 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.943 -5.661 1.641 7.693 hybrid contribution -1.143 0.977 0.660 1.642 sum 3.801 -4.684 2.301 6.456 Atomic orbital electron populations 1.69655 1.08129 1.30870 1.32074 1.26260 0.94797 1.01854 0.90977 0.86350 0.80951 0.79545 0.79426 1.19197 1.21301 1.16884 1.19514 0.92268 0.96364 1.36467 0.87990 1.18391 0.93770 0.91252 0.90565 1.21202 0.95836 1.03676 1.02894 1.21379 0.94755 0.98361 0.99203 1.21686 0.98901 0.96854 1.02449 1.67079 1.13886 1.22728 1.10500 1.19392 0.89194 1.00806 1.02664 1.17730 0.95404 0.88312 0.93418 1.21239 0.96198 1.00330 0.92412 1.20792 1.00624 0.92653 0.99691 1.20783 0.99199 0.95707 0.96441 1.19185 1.01879 0.91666 0.96974 1.20822 1.00843 0.95799 0.97826 1.25149 1.06070 1.02373 1.01403 1.84382 1.56230 0.94868 1.27484 1.22778 1.04263 0.96783 0.99646 0.89879 0.86963 0.87730 0.85517 0.84667 0.85970 0.86502 0.84706 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.30 13.93 55.55 0.77 -18.53 16 2 C 0.08 2.01 5.43 -17.32 -0.09 1.92 16 3 Si 0.91 19.33 24.53 -169.99 -4.17 15.17 16 4 H -0.27 -5.47 6.46 56.52 0.37 -5.11 16 5 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.25 -5.42 6.99 56.52 0.40 -5.02 16 7 C -0.42 -10.55 7.55 -37.94 -0.29 -10.84 16 8 H 0.10 2.74 6.96 -52.49 -0.37 2.37 16 9 C 0.07 1.61 5.13 -106.40 -0.55 1.07 16 10 C -0.21 -4.89 7.31 -38.98 -0.29 -5.18 16 11 C -0.12 -2.46 10.03 -39.83 -0.40 -2.86 16 12 C -0.04 -0.85 11.16 -17.36 -0.19 -1.05 16 13 N -0.43 -10.18 9.74 -9.20 -0.09 -10.27 16 14 C 0.02 0.48 6.17 -82.27 -0.51 -0.03 16 15 C 0.06 1.26 5.09 -104.62 -0.53 0.73 16 16 C -0.08 -1.63 8.04 -39.20 -0.32 -1.94 16 17 C -0.12 -2.03 9.98 -39.85 -0.40 -2.42 16 18 C -0.10 -1.66 10.09 -38.76 -0.39 -2.05 16 19 C -0.09 -1.63 6.04 -105.39 -0.64 -2.26 16 20 C -0.12 -1.86 10.39 -38.61 -0.40 -2.26 16 21 C -0.22 -3.26 11.02 28.84 0.32 -2.94 16 22 S 0.11 1.97 22.51 -107.50 -2.42 -0.45 16 23 C -0.12 -2.47 6.30 -37.94 -0.24 -2.71 16 24 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 25 H 0.11 2.53 4.49 -52.49 -0.24 2.30 16 26 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 27 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 28 H 0.14 2.80 7.28 -52.48 -0.38 2.41 16 29 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.14 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 286.37 15.07 4.32 4.32 Total: -1.00 -27.41 286.37 -9.19 -36.60 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -2.70 Total: 5.98 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -4.91 Total: -32.82 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: 0.68 Total: -28.80 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.17 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.42 Total: -0.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.41 -9.19 -36.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241400300.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.770 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds