Wall clock time and date at job start Tue Mar 31 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30752 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48499 * 109.47016 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46530 * 120.00104 * 3 2 1 6 6 H 1.48492 * 109.47189 * 239.99808 * 3 2 1 7 7 C 1.40005 * 119.99928 * 179.72874 * 2 1 3 8 8 H 1.08001 * 119.99800 * 156.61610 * 7 2 1 9 9 C 1.41356 * 119.99992 * 336.61973 * 7 2 1 10 10 C 1.40719 * 119.76401 * 153.11096 * 9 7 2 11 11 C 1.38278 * 119.20175 * 179.74947 * 10 9 7 12 12 C 1.38697 * 118.70061 * 0.51130 * 11 10 9 13 13 C 1.39960 * 119.45804 * 359.72907 * 12 11 10 14 14 C 1.48133 * 119.61632 * 179.97438 * 13 12 11 15 15 C 1.38779 * 119.97820 * 356.81506 * 14 13 12 16 16 C 1.38493 * 120.04243 * 179.97438 * 15 14 13 17 17 C 1.37278 * 120.60918 * 0.02562 * 16 15 14 18 18 C 1.41178 * 120.62675 * 359.97438 * 17 16 15 19 19 C 1.45431 * 129.25588 * 179.97438 * 18 17 16 20 20 C 1.31804 * 114.89801 * 180.02562 * 19 18 17 21 21 S 1.75298 * 111.38585 * 0.02562 * 20 19 18 22 22 C 1.39642 * 118.91902 * 359.75318 * 18 17 16 23 23 N 1.32316 * 120.77310 * 0.02562 * 13 12 11 24 24 H 0.96999 * 120.00402 * 174.39078 * 1 2 3 25 25 H 1.08000 * 120.39681 * 359.97438 * 10 9 7 26 26 H 1.07995 * 120.65180 * 180.21935 * 11 10 9 27 27 H 1.08001 * 120.27299 * 179.70359 * 12 11 10 28 28 H 1.07995 * 119.97680 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.69378 * 179.97438 * 16 15 14 30 30 H 1.08008 * 119.68221 * 179.97438 * 17 16 15 31 31 H 1.08007 * 122.55374 * 0.04914 * 19 18 17 32 32 H 1.07998 * 124.30779 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 1.2765 2.7465 0.0006 5 1 3.0952 1.6963 1.2126 6 1 3.0952 1.6965 -1.2124 7 6 2.0075 -1.2125 0.0057 8 1 3.0210 -1.2526 -0.3653 9 6 1.3878 -2.3841 0.4971 10 6 1.7964 -3.6432 0.0198 11 6 1.1859 -4.7820 0.5123 12 6 0.1794 -4.6429 1.4564 13 6 -0.1869 -3.3630 1.8886 14 6 -1.2617 -3.2103 2.8964 15 6 -1.9440 -4.3275 3.3572 16 6 -2.9488 -4.1864 4.2998 17 6 -3.2810 -2.9467 4.7870 18 6 -2.6046 -1.7921 4.3371 19 6 -2.8001 -0.4029 4.7204 20 6 -2.0039 0.4566 4.1167 21 16 -0.9186 -0.3513 3.0021 22 6 -1.5870 -1.9313 3.3910 23 7 0.4151 -2.2877 1.4067 24 1 -0.4851 -0.8360 -0.0821 25 1 2.5800 -3.7194 -0.7195 26 1 1.4835 -5.7603 0.1651 27 1 -0.3179 -5.5149 1.8546 28 1 -1.6913 -5.3076 2.9805 29 1 -3.4764 -5.0596 4.6541 30 1 -4.0674 -2.8539 5.5215 31 1 -3.5411 -0.0987 5.4449 32 1 -2.0182 1.5230 4.2870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241401005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:52 Heat of formation + Delta-G solvation = 62.143867 kcal Electronic energy + Delta-G solvation = -18688.028909 eV Core-core repulsion = 15896.877973 eV Total energy + Delta-G solvation = -2791.150937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.26507 -38.12174 -34.77865 -33.82846 -31.84453 -30.57622 -28.92813 -28.59572 -25.46949 -23.27704 -23.08673 -21.45476 -20.73588 -19.73008 -17.96641 -17.26043 -15.67311 -15.24820 -14.90838 -14.65966 -14.24178 -14.08221 -13.74838 -13.43979 -13.15021 -12.77121 -12.51471 -12.04061 -11.86938 -11.68573 -11.35414 -11.13848 -10.76711 -10.74502 -10.60176 -10.39711 -9.98908 -9.54044 -9.36288 -9.00598 -8.44740 -8.07600 -8.02137 -7.78032 -7.13483 -6.76668 -4.62401 1.11059 1.57026 2.37662 2.48508 2.71803 2.92785 3.03620 3.16856 3.25845 3.36944 4.03470 4.17655 4.67591 5.02290 5.07769 5.23985 5.54389 5.55673 5.62734 5.74259 5.88212 6.08553 6.16121 6.25028 6.39366 6.41419 6.51647 6.56193 6.73906 6.88555 6.95626 7.02397 7.26340 7.38364 7.47793 7.69164 7.79517 7.96620 8.58569 8.71440 9.63434 10.11194 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.008593 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.120767 B = 3257.821065 C = 4880.934877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.045 3.955 3 Si 1.059 2.941 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.082 0.918 9 C 0.256 3.744 10 C -0.262 4.262 11 C -0.053 4.053 12 C -0.295 4.295 13 C 0.183 3.817 14 C 0.011 3.989 15 C -0.102 4.102 16 C -0.128 4.128 17 C -0.089 4.089 18 C -0.088 4.088 19 C -0.141 4.141 20 C -0.246 4.246 21 S 0.245 5.755 22 C -0.131 4.131 23 N -0.537 5.537 24 H 0.301 0.699 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -1.565 6.232 7.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.182 4.182 3 Si 0.882 3.118 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.529 4.529 8 H 0.100 0.900 9 C 0.132 3.868 10 C -0.285 4.285 11 C -0.077 4.077 12 C -0.318 4.318 13 C 0.040 3.960 14 C 0.006 3.994 15 C -0.125 4.125 16 C -0.149 4.149 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.173 4.173 20 C -0.381 4.381 21 S 0.514 5.486 22 C -0.248 4.248 23 N -0.252 5.252 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.532 1.553 5.529 6.742 hybrid contribution -0.695 -3.226 0.614 3.357 sum -4.227 -1.673 6.143 7.642 Atomic orbital electron populations 1.70251 1.07999 1.34634 1.24268 1.26839 0.95749 1.03638 0.91962 0.83728 0.75860 0.74225 0.77946 1.19631 1.19926 1.20249 1.20412 1.01922 0.93284 1.37294 0.90007 1.18440 0.88010 0.92438 0.87894 1.21868 1.06840 0.93687 1.06097 1.20880 0.94742 0.97157 0.94944 1.21132 1.06266 0.96238 1.08207 1.19521 0.92903 0.90188 0.93360 1.18201 0.95246 0.90511 0.95477 1.21079 0.96075 0.97804 0.97514 1.20699 0.98662 0.96885 0.98619 1.20843 0.99218 0.91092 0.99766 1.19280 0.97812 0.93710 0.98871 1.20649 1.02546 0.90610 1.03478 1.25950 1.03970 1.03969 1.04172 1.86176 1.33669 0.92143 1.36615 1.23078 1.01197 0.99190 1.01348 1.67870 1.13550 1.29792 1.13979 0.88481 0.87872 0.88060 0.87848 0.85318 0.86003 0.86398 0.85341 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.47 12.12 55.55 0.67 -18.80 16 2 C 0.05 1.13 5.24 -17.35 -0.09 1.04 16 3 Si 1.06 21.29 29.99 -169.99 -5.10 16.19 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.50 -12.94 9.03 -37.73 -0.34 -13.28 16 8 H 0.08 2.03 7.95 -52.49 -0.42 1.62 16 9 C 0.26 6.76 5.93 -85.01 -0.50 6.25 16 10 C -0.26 -6.29 9.83 -38.63 -0.38 -6.67 16 11 C -0.05 -1.16 10.15 -39.40 -0.40 -1.56 16 12 C -0.29 -6.45 9.47 -38.77 -0.37 -6.82 16 13 C 0.18 4.36 6.73 -82.95 -0.56 3.80 16 14 C 0.01 0.23 5.90 -104.61 -0.62 -0.39 16 15 C -0.10 -1.80 9.40 -39.29 -0.37 -2.17 16 16 C -0.13 -1.93 9.98 -39.84 -0.40 -2.33 16 17 C -0.09 -1.39 10.08 -38.82 -0.39 -1.78 16 18 C -0.09 -1.62 6.04 -105.40 -0.64 -2.25 16 19 C -0.14 -2.35 10.39 -38.61 -0.40 -2.76 16 20 C -0.25 -4.28 11.02 28.84 0.32 -3.96 16 21 S 0.25 5.31 20.08 -107.50 -2.16 3.15 16 22 C -0.13 -2.80 6.32 -38.04 -0.24 -3.04 16 23 N -0.54 -13.93 5.82 -7.69 -0.04 -13.98 16 24 H 0.30 8.30 6.96 -40.82 -0.28 8.02 16 25 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.10 1.94 6.17 -52.49 -0.32 1.62 16 28 H 0.13 2.01 6.14 -52.49 -0.32 1.68 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 290.39 15.07 4.38 4.38 Total: -1.00 -28.14 290.39 -10.31 -38.45 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.68 Total: 6.53 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -5.38 Total: -35.91 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.63 Total: -32.78 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.10 Total: 16.19 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -2.16 Total: 3.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.14 -10.31 -38.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241401005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.591 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds