Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86796 * 120.00323 * 2 1 4 4 H 1.48501 * 109.46964 * 90.00217 * 3 2 1 5 5 H 1.48497 * 109.47517 * 210.00125 * 3 2 1 6 6 H 1.48498 * 109.47031 * 330.00618 * 3 2 1 7 7 C 1.40101 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99905 * 15.77082 * 7 2 1 9 9 C 1.40691 * 120.00193 * 195.77413 * 7 2 1 10 10 N 1.33732 * 119.95376 * 9.34409 * 9 7 2 11 11 C 1.31255 * 121.64422 * 179.75066 * 10 9 7 12 12 C 1.39106 * 121.37069 * 0.53391 * 11 10 9 13 13 C 1.38287 * 119.75062 * 359.73441 * 12 11 10 14 14 C 1.39838 * 118.46990 * 0.02562 * 13 12 11 15 15 C 1.47535 * 120.66664 * 180.02562 * 14 13 12 16 16 C 1.39222 * 120.01524 * 64.97827 * 15 14 13 17 17 C 1.38313 * 120.00347 * 180.02562 * 16 15 14 18 18 C 1.37434 * 120.65051 * 359.94355 * 17 16 15 19 19 C 1.41227 * 120.69205 * 0.05747 * 18 17 16 20 20 C 1.45442 * 129.23273 * 179.97438 * 19 18 17 21 21 C 1.31834 * 114.89140 * 180.02562 * 20 19 18 22 22 S 1.75295 * 111.37407 * 0.02562 * 21 20 19 23 23 C 1.39585 * 118.94111 * 359.71545 * 19 18 17 24 24 H 0.96995 * 120.00175 * 174.93287 * 1 2 3 25 25 H 1.07996 * 119.31901 * 180.28658 * 11 10 9 26 26 H 1.08002 * 120.12804 * 179.75635 * 12 11 10 27 27 H 1.08004 * 120.76552 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.99413 * 359.97405 * 16 15 14 29 29 H 1.08006 * 119.67301 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.65735 * 180.02562 * 18 17 16 31 31 H 1.07994 * 122.55547 * 359.97438 * 20 19 18 32 32 H 1.08003 * 124.31396 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4889 2.0463 1.4001 5 1 3.5388 1.4401 -0.7000 6 1 1.4387 2.6526 -0.6999 7 6 2.0077 -1.2133 -0.0005 8 1 1.4982 -2.1309 -0.2552 9 6 3.3749 -1.2365 0.3307 10 7 3.9609 -0.1407 0.8248 11 6 5.2326 -0.1267 1.1494 12 6 6.0346 -1.2511 0.9838 13 6 5.4886 -2.4142 0.4723 14 6 4.1318 -2.4210 0.1340 15 6 3.4993 -3.6356 -0.4150 16 6 3.3956 -4.7817 0.3685 17 6 2.8031 -5.9204 -0.1466 18 6 2.3111 -5.9350 -1.4298 19 6 2.4012 -4.7884 -2.2494 20 6 1.9487 -4.5985 -3.6185 21 6 2.1790 -3.4004 -4.1179 22 16 2.9833 -2.3665 -2.9530 23 6 2.9938 -3.6345 -1.7339 24 1 -0.4850 -0.8367 -0.0742 25 1 5.6663 0.7777 1.5498 26 1 7.0797 -1.2162 1.2540 27 1 6.0961 -3.2969 0.3373 28 1 3.7786 -4.7819 1.3783 29 1 2.7258 -6.8067 0.4658 30 1 1.8511 -6.8327 -1.8156 31 1 1.4620 -5.3798 -4.1834 32 1 1.9067 -3.0947 -5.1174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241405055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = 56.659973 kcal Electronic energy + Delta-G solvation = -18864.327698 eV Core-core repulsion = 16072.938962 eV Total energy + Delta-G solvation = -2791.388736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29487 -38.20068 -34.81160 -33.91336 -32.21741 -30.95067 -28.92329 -28.63545 -25.57083 -23.20029 -23.08742 -21.53076 -20.62628 -19.77978 -18.41798 -17.36871 -15.81863 -15.38778 -15.17584 -14.91861 -14.59611 -13.86694 -13.75926 -13.40368 -13.09231 -12.67775 -12.52110 -12.31385 -12.02697 -11.94086 -11.35729 -11.28087 -10.88652 -10.76997 -10.52385 -10.12959 -9.98696 -9.84954 -9.24598 -8.93272 -8.59416 -8.12984 -7.96275 -7.86016 -7.36946 -6.97251 -4.81738 1.19283 1.67188 2.12736 2.38950 2.59690 2.65208 2.77169 3.50943 3.60113 3.89351 4.17217 4.32960 4.52889 4.96253 5.23060 5.33722 5.48678 5.56365 5.66864 5.68908 5.78529 5.87724 6.14934 6.22250 6.25223 6.32348 6.45108 6.50634 6.73406 6.84149 6.94548 6.98271 7.21102 7.31197 7.38090 7.44968 7.64344 8.03900 8.22651 8.57366 9.42647 9.89073 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.008658 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.368585 B = 3233.264734 C = 3991.520310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.051 3.949 3 Si 1.137 2.863 4 H -0.284 1.284 5 H -0.278 1.278 6 H -0.325 1.325 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.260 3.740 10 N -0.566 5.566 11 C 0.158 3.842 12 C -0.321 4.321 13 C -0.016 4.016 14 C -0.240 4.240 15 C 0.061 3.939 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.129 4.129 21 C -0.213 4.213 22 S 0.128 5.872 23 C -0.121 4.121 24 H 0.286 0.714 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -7.403 -4.194 9.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.173 4.173 3 Si 0.969 3.031 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.257 1.257 7 C -0.480 4.480 8 H 0.104 0.896 9 C 0.139 3.861 10 N -0.283 5.283 11 C -0.007 4.007 12 C -0.344 4.344 13 C -0.040 4.040 14 C -0.244 4.244 15 C 0.056 3.944 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.125 4.125 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.347 4.347 22 S 0.395 5.605 23 C -0.237 4.237 24 H 0.098 0.902 25 H 0.145 0.855 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.025 -3.624 -4.199 6.853 hybrid contribution 0.042 -4.124 -0.049 4.124 sum 4.067 -7.747 -4.248 9.727 Atomic orbital electron populations 1.70587 1.08364 1.33250 1.28694 1.27737 0.95164 1.05956 0.88430 0.82223 0.72852 0.70048 0.77962 1.21055 1.20455 1.25721 1.20705 0.93239 0.97102 1.36984 0.89590 1.18435 0.93007 0.85939 0.88699 1.66833 1.11928 1.28393 1.21149 1.22231 0.89699 0.96341 0.92430 1.21041 0.99946 0.95869 1.17570 1.20967 0.93255 0.96505 0.93259 1.19151 0.94275 0.95129 1.15867 1.18007 0.94132 0.92913 0.89325 1.21171 1.01066 0.92357 0.99303 1.20733 0.99590 0.98068 0.95293 1.20770 1.01548 0.96365 0.93840 1.19240 1.01721 0.94201 0.93955 1.20791 1.03736 0.97618 0.93937 1.25256 1.06872 0.98451 1.04136 1.84610 1.60708 1.13648 1.01557 1.22862 1.05561 0.96794 0.98481 0.90240 0.85517 0.87804 0.87998 0.85961 0.86250 0.86533 0.84742 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.04 13.65 55.55 0.76 -20.28 16 2 C 0.05 1.35 5.51 -17.32 -0.10 1.25 16 3 Si 1.14 27.48 25.93 -169.99 -4.41 23.07 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.73 6.55 56.52 0.37 -6.36 16 6 H -0.32 -7.70 7.11 56.52 0.40 -7.29 16 7 C -0.45 -11.86 7.93 -37.96 -0.30 -12.16 16 8 H 0.09 2.36 6.54 -52.48 -0.34 2.01 16 9 C 0.26 6.60 6.25 -84.70 -0.53 6.07 16 10 N -0.57 -14.08 5.05 -10.90 -0.05 -14.13 16 11 C 0.16 3.40 11.17 -17.48 -0.20 3.21 16 12 C -0.32 -6.44 10.10 -39.24 -0.40 -6.84 16 13 C -0.02 -0.33 9.88 -38.97 -0.38 -0.71 16 14 C -0.24 -5.49 5.14 -104.09 -0.53 -6.03 16 15 C 0.06 1.29 4.42 -104.60 -0.46 0.83 16 16 C -0.12 -2.16 9.73 -39.19 -0.38 -2.54 16 17 C -0.12 -1.85 9.98 -39.85 -0.40 -2.24 16 18 C -0.11 -1.68 10.09 -38.74 -0.39 -2.07 16 19 C -0.08 -1.51 6.04 -105.39 -0.64 -2.14 16 20 C -0.13 -2.05 10.39 -38.61 -0.40 -2.45 16 21 C -0.21 -3.42 11.02 28.83 0.32 -3.10 16 22 S 0.13 2.54 22.04 -107.50 -2.37 0.17 16 23 C -0.12 -2.50 5.20 -37.94 -0.20 -2.70 16 24 H 0.29 7.41 8.73 -40.82 -0.36 7.06 16 25 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 28 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.16 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 290.01 15.07 4.37 4.37 Total: -1.00 -28.50 290.01 -9.60 -38.10 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -2.91 Total: 0.34 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -4.99 Total: -31.63 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.70 Total: -34.42 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.41 Total: 23.07 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.37 Total: 0.17 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.50 -9.60 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241405055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.756 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds