Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86796 * 120.00323 * 2 1 4 4 H 1.48501 * 109.46964 * 90.00217 * 3 2 1 5 5 H 1.48497 * 109.47517 * 210.00125 * 3 2 1 6 6 H 1.48498 * 109.47031 * 330.00618 * 3 2 1 7 7 C 1.40101 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99905 * 15.77082 * 7 2 1 9 9 C 1.40691 * 120.00193 * 195.77413 * 7 2 1 10 10 N 1.33732 * 119.95376 * 9.34409 * 9 7 2 11 11 C 1.31255 * 121.64422 * 179.75066 * 10 9 7 12 12 C 1.39106 * 121.37069 * 0.53391 * 11 10 9 13 13 C 1.38287 * 119.75062 * 359.73441 * 12 11 10 14 14 C 1.39838 * 118.46990 * 0.02562 * 13 12 11 15 15 C 1.47535 * 120.66664 * 180.02562 * 14 13 12 16 16 C 1.39222 * 120.01524 * 64.97827 * 15 14 13 17 17 C 1.38313 * 120.00347 * 180.02562 * 16 15 14 18 18 C 1.37434 * 120.65051 * 359.94355 * 17 16 15 19 19 C 1.41227 * 120.69205 * 0.05747 * 18 17 16 20 20 C 1.45442 * 129.23273 * 179.97438 * 19 18 17 21 21 C 1.31834 * 114.89140 * 180.02562 * 20 19 18 22 22 S 1.75295 * 111.37407 * 0.02562 * 21 20 19 23 23 C 1.39585 * 118.94111 * 359.71545 * 19 18 17 24 24 H 0.96995 * 120.00175 * 174.93287 * 1 2 3 25 25 H 1.07996 * 119.31901 * 180.28658 * 11 10 9 26 26 H 1.08002 * 120.12804 * 179.75635 * 12 11 10 27 27 H 1.08004 * 120.76552 * 180.02562 * 13 12 11 28 28 H 1.08000 * 119.99413 * 359.97405 * 16 15 14 29 29 H 1.08006 * 119.67301 * 179.97438 * 17 16 15 30 30 H 1.08001 * 119.65735 * 180.02562 * 18 17 16 31 31 H 1.07994 * 122.55547 * 359.97438 * 20 19 18 32 32 H 1.08003 * 124.31396 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6176 0.0000 4 1 2.4889 2.0463 1.4001 5 1 3.5388 1.4401 -0.7000 6 1 1.4387 2.6526 -0.6999 7 6 2.0077 -1.2133 -0.0005 8 1 1.4982 -2.1309 -0.2552 9 6 3.3749 -1.2365 0.3307 10 7 3.9609 -0.1407 0.8248 11 6 5.2326 -0.1267 1.1494 12 6 6.0346 -1.2511 0.9838 13 6 5.4886 -2.4142 0.4723 14 6 4.1318 -2.4210 0.1340 15 6 3.4993 -3.6356 -0.4150 16 6 3.3956 -4.7817 0.3685 17 6 2.8031 -5.9204 -0.1466 18 6 2.3111 -5.9350 -1.4298 19 6 2.4012 -4.7884 -2.2494 20 6 1.9487 -4.5985 -3.6185 21 6 2.1790 -3.4004 -4.1179 22 16 2.9833 -2.3665 -2.9530 23 6 2.9938 -3.6345 -1.7339 24 1 -0.4850 -0.8367 -0.0742 25 1 5.6663 0.7777 1.5498 26 1 7.0797 -1.2162 1.2540 27 1 6.0961 -3.2969 0.3373 28 1 3.7786 -4.7819 1.3783 29 1 2.7258 -6.8067 0.4658 30 1 1.8511 -6.8327 -1.8156 31 1 1.4620 -5.3798 -4.1834 32 1 1.9067 -3.0947 -5.1174 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241405055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = 42.581572 kcal Electronic energy + Delta-G solvation = -18864.938183 eV Core-core repulsion = 16072.938962 eV Total energy + Delta-G solvation = -2791.999221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84170 -39.75867 -36.14370 -35.80051 -33.75245 -32.71907 -30.35397 -30.10714 -27.36335 -24.72446 -24.47683 -23.22229 -22.16067 -21.14511 -20.33312 -18.77790 -17.43980 -16.95410 -16.75684 -16.37556 -15.96945 -15.71892 -15.21413 -14.76846 -14.50709 -14.40767 -14.26067 -14.04252 -13.72592 -13.31050 -12.88043 -12.75473 -12.55554 -12.20299 -12.03586 -11.85247 -11.71628 -11.41156 -11.14865 -10.48833 -10.27637 -9.79440 -9.68911 -9.43985 -9.26594 -8.44989 -6.71198 -0.14241 0.25003 0.71609 0.74225 0.85569 1.29166 1.42980 1.54827 1.68250 1.96655 2.40274 2.63857 2.82507 3.58079 3.74741 3.84547 4.09021 4.16747 4.25673 4.31188 4.44286 4.50811 4.65520 4.76441 4.85869 4.90939 5.02124 5.12246 5.19722 5.39858 5.41896 5.53529 5.55073 5.62408 5.72209 5.90244 6.03891 6.09310 6.40492 6.71528 7.62688 7.93378 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016187 B = 0.008658 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.368585 B = 3233.264734 C = 3991.520310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.026 3.974 3 Si 1.168 2.832 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.323 1.323 7 C -0.473 4.473 8 H 0.062 0.938 9 C 0.248 3.752 10 N -0.593 5.593 11 C 0.135 3.865 12 C -0.296 4.296 13 C -0.027 4.027 14 C -0.239 4.239 15 C 0.020 3.980 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.096 4.096 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.204 4.204 22 S 0.047 5.953 23 C -0.141 4.141 24 H 0.279 0.721 25 H 0.161 0.839 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 -9.827 -4.420 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.192 4.192 3 Si 0.999 3.001 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.255 1.255 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.125 3.875 10 N -0.311 5.311 11 C -0.028 4.028 12 C -0.319 4.319 13 C -0.051 4.051 14 C -0.243 4.243 15 C 0.015 3.985 16 C -0.143 4.143 17 C -0.133 4.133 18 C -0.115 4.115 19 C -0.109 4.109 20 C -0.154 4.154 21 C -0.337 4.337 22 S 0.312 5.688 23 C -0.256 4.256 24 H 0.090 0.910 25 H 0.178 0.822 26 H 0.162 0.838 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.178 0.822 30 H 0.176 0.824 31 H 0.194 0.806 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.510 -6.054 -4.411 9.299 hybrid contribution -0.160 -3.590 0.045 3.594 sum 5.350 -9.644 -4.366 11.862 Atomic orbital electron populations 1.70621 1.08643 1.32732 1.32174 1.28315 0.95390 1.07471 0.88073 0.81801 0.71950 0.68676 0.77710 1.20950 1.21118 1.25509 1.20384 0.94044 0.96031 1.39976 0.92030 1.18613 0.93035 0.87193 0.88648 1.66750 1.13730 1.28689 1.21884 1.22884 0.88961 0.98409 0.92501 1.21551 1.01547 0.94646 1.14120 1.21387 0.92774 0.97984 0.93005 1.19472 0.95148 0.95174 1.14522 1.18170 0.96538 0.93378 0.90387 1.21412 1.01000 0.92473 0.99426 1.21173 0.98014 0.98398 0.95749 1.21296 0.99959 0.96816 0.93458 1.19792 1.01525 0.94229 0.95367 1.21203 1.02716 0.98366 0.93085 1.25499 1.06290 0.97494 1.04422 1.84738 1.63047 1.16714 1.04291 1.22989 1.06668 0.97411 0.98532 0.90969 0.82201 0.83847 0.85273 0.85208 0.82181 0.82448 0.80564 0.79060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.03 13.65 21.85 0.30 -45.73 16 2 C 0.03 1.44 5.51 85.31 0.47 1.91 16 3 Si 1.17 57.67 25.93 68.60 1.78 59.45 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 5 H -0.28 -14.05 6.55 99.48 0.65 -13.40 16 6 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 7 C -0.47 -26.17 7.93 23.32 0.18 -25.98 16 8 H 0.06 3.61 6.54 -2.91 -0.02 3.59 16 9 C 0.25 12.87 6.25 40.37 0.25 13.12 16 10 N -0.59 -29.61 5.05 -188.39 -0.95 -30.56 16 11 C 0.13 5.57 11.17 84.99 0.95 6.52 16 12 C -0.30 -11.05 10.10 22.49 0.23 -10.82 16 13 C -0.03 -1.09 9.88 22.67 0.22 -0.87 16 14 C -0.24 -11.00 5.14 -19.52 -0.10 -11.10 16 15 C 0.02 0.85 4.42 -19.85 -0.09 0.77 16 16 C -0.12 -4.32 9.73 22.52 0.22 -4.10 16 17 C -0.11 -3.22 9.98 22.10 0.22 -3.00 16 18 C -0.10 -2.71 10.09 22.81 0.23 -2.48 16 19 C -0.10 -3.48 6.04 -20.36 -0.12 -3.61 16 20 C -0.12 -3.60 10.39 23.33 0.24 -3.35 16 21 C -0.20 -6.29 11.02 67.03 0.74 -5.55 16 22 S 0.05 1.92 22.04 -56.49 -1.24 0.67 16 23 C -0.14 -5.84 5.20 23.33 0.12 -5.72 16 24 H 0.28 15.44 8.73 -92.71 -0.81 14.63 16 25 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 26 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 27 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 29 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -65.59 290.01 4.70 -60.89 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.05 Total: 9.53 kcal Atomic # 6 Polarization: -58.03 SS G_CDS: 3.77 Total: -54.26 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -0.65 Total: -76.29 kcal Atomic # 14 Polarization: 57.67 SS G_CDS: 1.78 Total: 59.45 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.24 Total: 0.67 kcal Total: -65.59 4.70 -60.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241405055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.475 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds