Wall clock time and date at job start Tue Mar 31 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86800 * 120.00262 * 2 1 4 4 H 1.48503 * 109.46915 * 240.00230 * 3 2 1 5 5 H 1.48494 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46949 * 120.00369 * 3 2 1 7 7 C 1.40052 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99747 * 164.22732 * 7 2 1 9 9 C 1.40848 * 119.99902 * 344.22009 * 7 2 1 10 10 C 1.40762 * 120.33793 * 334.18674 * 9 7 2 11 11 C 1.36414 * 119.99115 * 179.97438 * 10 9 7 12 12 C 1.38955 * 120.69154 * 359.97438 * 11 10 9 13 13 C 1.38039 * 120.68386 * 0.02682 * 12 11 10 14 14 C 1.39211 * 119.97899 * 359.97356 * 13 12 11 15 15 C 1.47811 * 120.33736 * 180.02562 * 14 13 12 16 16 C 1.40162 * 119.86298 * 130.00030 * 15 14 13 17 17 C 1.36247 * 120.07923 * 179.97438 * 16 15 14 18 18 C 1.39580 * 120.44309 * 0.02562 * 17 16 15 19 19 S 1.76151 * 131.52218 * 179.97438 * 18 17 16 20 20 C 1.70619 * 90.85894 * 180.02562 * 19 18 17 21 21 N 1.27886 * 111.57663 * 359.97438 * 20 19 18 22 22 C 1.34735 * 117.83559 * 0.02562 * 21 20 19 23 23 C 1.38738 * 119.85534 * 309.72211 * 15 14 13 24 24 H 0.97000 * 119.99756 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99904 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.65174 * 180.27956 * 11 10 9 27 27 H 1.08005 * 119.65422 * 179.97438 * 12 11 10 28 28 H 1.08002 * 120.00770 * 179.97438 * 13 12 11 29 29 H 1.08004 * 119.96182 * 359.97323 * 16 15 14 30 30 H 1.07996 * 119.77822 * 179.97438 * 17 16 15 31 31 H 1.07998 * 124.21266 * 179.97438 * 20 19 18 32 32 H 1.07999 * 119.98563 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0957 1.6963 -1.2126 5 1 1.2771 2.7464 -0.0006 6 1 3.0957 1.6962 1.2124 7 6 2.0081 -1.2129 -0.0005 8 1 3.0575 -1.2304 -0.2548 9 6 1.3435 -2.4098 0.3306 10 6 0.2035 -2.3852 1.1559 11 6 -0.4350 -3.5486 1.4717 12 6 0.0274 -4.7657 0.9863 13 6 1.1428 -4.8226 0.1750 14 6 1.8160 -3.6526 -0.1651 15 6 3.0108 -3.7043 -1.0338 16 6 3.1009 -2.8582 -2.1476 17 6 4.2005 -2.9018 -2.9511 18 6 5.2440 -3.7866 -2.6743 19 16 6.7717 -4.0848 -3.4988 20 6 7.1870 -5.2782 -2.3524 21 7 6.2745 -5.4179 -1.4673 22 6 5.1773 -4.6423 -1.5671 23 6 4.0408 -4.5860 -0.7399 24 1 -0.4850 0.8401 0.0004 25 1 -0.1662 -1.4452 1.5382 26 1 -1.3118 -3.5229 2.1016 27 1 -0.4907 -5.6767 1.2473 28 1 1.4929 -5.7747 -0.1958 29 1 2.2979 -2.1709 -2.3693 30 1 4.2647 -2.2480 -3.8082 31 1 8.1060 -5.8451 -2.3717 32 1 3.9685 -5.2323 0.1224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241866829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:45 Heat of formation + Delta-G solvation = 68.125816 kcal Electronic energy + Delta-G solvation = -18335.747970 eV Core-core repulsion = 15544.856430 eV Total energy + Delta-G solvation = -2790.891540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92235 -37.94727 -36.08375 -33.85292 -31.58379 -30.16474 -29.41425 -28.01859 -25.50552 -24.50402 -22.80373 -21.42961 -20.80729 -19.58275 -18.08701 -17.33277 -16.17564 -15.51858 -15.42095 -14.89000 -14.39732 -14.26137 -13.70414 -13.40390 -13.35810 -13.01082 -12.68454 -11.97668 -11.77939 -11.50597 -11.38126 -11.20947 -11.09380 -10.88426 -10.61300 -10.48742 -9.87258 -9.58892 -9.55768 -9.42287 -9.32784 -8.29847 -7.85544 -7.52650 -7.25443 -6.89743 -4.50773 0.82454 1.55283 1.56310 1.99153 2.64714 2.75394 2.97501 2.98491 3.01588 3.15402 3.80886 4.23216 4.30107 4.50397 5.04138 5.34778 5.51319 5.62790 5.75536 5.89110 6.09361 6.13575 6.33345 6.42806 6.50138 6.58793 6.79067 6.90180 7.06194 7.12944 7.25019 7.29411 7.44601 7.78057 7.87709 7.90312 7.98717 8.12090 8.46395 8.70195 8.80203 9.99668 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.006140 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.047453 B = 4559.406447 C = 5919.627543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.133 3.867 10 C -0.157 4.157 11 C -0.099 4.099 12 C -0.242 4.242 13 C -0.067 4.067 14 C -0.196 4.196 15 C 0.040 3.960 16 C -0.064 4.064 17 C -0.089 4.089 18 C -0.186 4.186 19 S 0.054 5.946 20 C 0.052 3.948 21 N -0.460 5.460 22 C 0.072 3.928 23 C -0.084 4.084 24 H 0.284 0.716 25 H 0.121 0.879 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.196 0.804 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.561 -2.929 -4.992 9.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.130 3.870 10 C -0.177 4.177 11 C -0.117 4.117 12 C -0.261 4.261 13 C -0.085 4.085 14 C -0.198 4.198 15 C 0.037 3.963 16 C -0.085 4.085 17 C -0.112 4.112 18 C -0.304 4.304 19 S 0.306 5.694 20 C -0.253 4.253 21 N -0.173 5.173 22 C -0.046 4.046 23 C -0.105 4.105 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.213 0.787 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.991 -2.817 -5.432 10.064 hybrid contribution -0.280 0.701 0.565 0.943 sum 7.710 -2.116 -4.867 9.360 Atomic orbital electron populations 1.69782 1.07612 1.29723 1.33772 1.25953 0.94723 1.01392 0.92132 0.86389 0.80255 0.80076 0.80355 1.18701 1.20168 1.18658 1.19575 0.97642 0.90765 1.39960 0.89895 1.17501 0.90588 0.90854 0.88026 1.21084 0.98742 0.97094 1.00739 1.20512 0.98450 0.93373 0.99396 1.20290 1.01396 0.96397 1.08050 1.20583 0.95366 0.95527 0.97022 1.18479 0.99806 0.94223 1.07293 1.18664 0.92754 0.91983 0.92855 1.21289 0.97116 0.97466 0.92657 1.19950 0.92401 0.98115 1.00700 1.23670 0.99896 1.05543 1.01242 1.83658 1.14012 1.39149 1.32618 1.27835 1.02196 1.00996 0.94312 1.66174 1.01296 1.24158 1.25659 1.19085 0.94306 0.95003 0.96173 1.20792 0.90276 1.00728 0.98729 0.90482 0.86168 0.89357 0.89283 0.89066 0.83827 0.85943 0.78732 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.76 10.92 55.55 0.61 -18.15 16 2 C 0.08 1.80 5.17 -17.32 -0.09 1.71 16 3 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.45 -10.96 7.13 -37.92 -0.27 -11.23 16 8 H 0.08 2.00 6.58 -52.49 -0.35 1.65 16 9 C 0.13 3.29 5.56 -106.56 -0.59 2.70 16 10 C -0.16 -3.86 8.63 -39.29 -0.34 -4.20 16 11 C -0.10 -2.21 9.96 -39.97 -0.40 -2.61 16 12 C -0.24 -5.22 10.03 -39.39 -0.40 -5.61 16 13 C -0.07 -1.45 9.49 -39.29 -0.37 -1.83 16 14 C -0.20 -4.51 5.51 -104.22 -0.57 -5.09 16 15 C 0.04 0.84 4.91 -105.07 -0.52 0.32 16 16 C -0.06 -1.25 7.90 -39.58 -0.31 -1.57 16 17 C -0.09 -1.54 9.99 -39.80 -0.40 -1.94 16 18 C -0.19 -3.23 6.56 -38.39 -0.25 -3.48 16 19 S 0.05 0.73 23.17 -107.50 -2.49 -1.76 16 20 C 0.05 0.70 12.10 51.12 0.62 1.32 16 21 N -0.46 -7.97 10.57 -13.00 -0.14 -8.11 16 22 C 0.07 1.36 6.99 -84.97 -0.59 0.77 16 23 C -0.08 -1.66 9.56 -38.47 -0.37 -2.03 16 24 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 25 H 0.12 3.02 6.17 -52.49 -0.32 2.70 16 26 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 28 H 0.09 1.79 8.04 -52.49 -0.42 1.37 16 29 H 0.14 2.88 7.29 -52.48 -0.38 2.50 16 30 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.13 2.47 8.02 -52.49 -0.42 2.05 16 LS Contribution 291.70 15.07 4.40 4.40 Total: -1.00 -26.37 291.70 -10.23 -36.60 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.72 Total: 7.14 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -4.85 Total: -32.77 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.47 Total: -26.26 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.49 Total: -1.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.37 -10.23 -36.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.722 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds