Wall clock time and date at job start Tue Mar 31 2020 05:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86793 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47266 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47084 * 299.99746 * 3 2 1 6 6 H 1.48495 * 109.47385 * 60.00248 * 3 2 1 7 7 C 1.39986 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99776 * 161.89081 * 7 2 1 9 9 C 1.40999 * 119.99973 * 342.16840 * 7 2 1 10 10 C 1.40947 * 120.11520 * 334.83396 * 9 7 2 11 11 C 1.36229 * 119.88110 * 179.75984 * 10 9 7 12 12 C 1.39980 * 120.11571 * 0.52440 * 11 10 9 13 13 C 1.47925 * 119.88337 * 179.70917 * 12 11 10 14 14 C 1.40118 * 119.85220 * 180.02562 * 13 12 11 15 15 C 1.36255 * 120.08033 * 179.97438 * 14 13 12 16 16 C 1.39573 * 120.43842 * 0.04546 * 15 14 13 17 17 S 1.76151 * 131.52683 * 179.97438 * 16 15 14 18 18 C 1.70626 * 90.85336 * 180.02562 * 17 16 15 19 19 N 1.27890 * 111.57967 * 359.97438 * 18 17 16 20 20 C 1.34726 * 117.83002 * 0.02562 * 19 18 17 21 21 C 1.38691 * 119.85187 * 359.75003 * 13 12 11 22 22 C 1.39979 * 120.23254 * 359.73114 * 12 11 10 23 23 C 1.36223 * 120.11561 * 0.02562 * 22 12 11 24 24 H 0.96998 * 119.99837 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.05865 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.93982 * 180.27610 * 11 10 9 27 27 H 1.07998 * 119.95940 * 0.02562 * 14 13 12 28 28 H 1.07999 * 119.78192 * 180.02562 * 15 14 13 29 29 H 1.08002 * 124.21344 * 179.97438 * 18 17 16 30 30 H 1.07995 * 119.97936 * 0.02562 * 21 13 12 31 31 H 1.07995 * 119.94454 * 180.02562 * 22 12 11 32 32 H 1.08004 * 120.06101 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3963 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2123 0.0005 8 1 3.0479 -1.2356 -0.2902 9 6 1.3538 -2.4039 0.3750 10 6 0.2305 -2.3568 1.2250 11 6 -0.4009 -3.5106 1.5798 12 6 0.0707 -4.7423 1.1106 13 6 -0.6150 -5.9925 1.5044 14 6 -0.1421 -7.2250 1.0347 15 6 -0.7698 -8.3795 1.3949 16 6 -1.8866 -8.3458 2.2314 17 16 -2.9061 -9.6322 2.8707 18 6 -3.8704 -8.4924 3.6967 19 7 -3.4575 -7.2978 3.5017 20 6 -2.3786 -7.1259 2.7133 21 6 -1.7197 -5.9398 2.3413 22 6 1.1891 -4.7950 0.2705 23 6 1.8248 -3.6467 -0.0942 24 1 -0.4850 0.8400 0.0004 25 1 -0.1316 -1.4074 1.5909 26 1 -1.2644 -3.4753 2.2275 27 1 0.7215 -7.2600 0.3872 28 1 -0.4010 -9.3268 1.0304 29 1 -4.7232 -8.7479 4.3081 30 1 -2.0774 -4.9874 2.7035 31 1 1.5487 -5.7477 -0.0891 32 1 2.6879 -3.6885 -0.7421 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241866871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:46 Heat of formation + Delta-G solvation = 68.187462 kcal Electronic energy + Delta-G solvation = -17698.104669 eV Core-core repulsion = 14907.215802 eV Total energy + Delta-G solvation = -2790.888867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04439 -38.01178 -36.35236 -33.95679 -31.53493 -30.29899 -29.45331 -28.58889 -25.48611 -24.64148 -22.77214 -21.81943 -20.41442 -19.84562 -18.22373 -17.59186 -16.25602 -15.68398 -15.62237 -15.04675 -14.49926 -14.08660 -13.86782 -13.44649 -13.35441 -12.91458 -12.57684 -12.26322 -12.13139 -11.75888 -11.54742 -11.27185 -11.12778 -10.88738 -10.75785 -10.51106 -9.88447 -9.85290 -9.57670 -9.45979 -9.32433 -8.58190 -8.03813 -7.72292 -7.14932 -6.98117 -4.53021 0.67115 1.31253 1.46573 1.89174 2.47009 2.75579 2.94772 2.99938 3.00367 3.10953 3.74227 4.07280 4.18426 4.55581 4.88270 5.23230 5.34098 5.52955 5.55445 5.69529 5.85690 6.04382 6.17753 6.36263 6.42645 6.51878 6.71178 6.77506 6.86282 7.03298 7.11282 7.22374 7.42385 7.72177 7.77820 7.84752 7.96632 8.05604 8.40161 8.62215 8.74566 9.88984 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.044370 B = 0.003391 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.906822 B = 8254.023604 C = 8807.867560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.441 4.441 8 H 0.084 0.916 9 C 0.121 3.879 10 C -0.172 4.172 11 C -0.071 4.071 12 C -0.213 4.213 13 C 0.040 3.960 14 C -0.113 4.113 15 C -0.068 4.068 16 C -0.206 4.206 17 S 0.055 5.945 18 C 0.060 3.940 19 N -0.463 5.463 20 C 0.088 3.912 21 C -0.102 4.102 22 C -0.058 4.058 23 C -0.231 4.231 24 H 0.286 0.714 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.197 0.803 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 -11.094 3.318 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.469 4.469 8 H 0.102 0.898 9 C 0.118 3.882 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.214 4.214 13 C 0.037 3.963 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.324 4.324 17 S 0.306 5.694 18 C -0.246 4.246 19 N -0.176 5.176 20 C -0.030 4.030 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.250 4.250 24 H 0.097 0.903 25 H 0.137 0.863 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.214 0.786 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.723 -11.546 3.527 12.633 hybrid contribution 0.477 1.503 -0.203 1.590 sum -3.246 -10.042 3.324 11.065 Atomic orbital electron populations 1.69827 1.07830 1.29944 1.31968 1.26072 0.94824 1.01893 0.92048 0.86174 0.81044 0.80278 0.78874 1.18100 1.19695 1.19377 1.19798 0.98431 0.91308 1.37335 0.89762 1.17769 0.90649 0.92148 0.87651 1.20988 0.99688 0.97004 1.01475 1.20555 0.97814 0.92341 0.98200 1.17952 1.02067 0.90437 1.10972 1.18797 0.92034 0.93400 0.92052 1.21010 1.00412 0.91247 1.00665 1.19866 0.93521 0.98761 0.96957 1.23578 1.04417 0.95285 1.09103 1.83648 1.25717 1.11788 1.48213 1.27908 1.03578 0.90475 1.02629 1.66199 1.12631 1.22803 1.15949 1.19098 0.92833 0.93869 0.97161 1.20653 0.96029 0.95528 1.00090 1.20387 0.94435 0.96781 0.96001 1.20687 1.04250 0.92819 1.07238 0.90294 0.86344 0.88801 0.84901 0.85964 0.78605 0.84955 0.88774 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.72 10.98 55.55 0.61 -18.11 16 2 C 0.07 1.69 5.13 -17.33 -0.09 1.61 16 3 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.44 -10.90 9.03 -37.88 -0.34 -11.24 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.12 3.04 5.57 -106.80 -0.59 2.44 16 10 C -0.17 -4.27 8.63 -39.28 -0.34 -4.60 16 11 C -0.07 -1.60 9.35 -39.65 -0.37 -1.98 16 12 C -0.21 -4.59 5.90 -104.63 -0.62 -5.20 16 13 C 0.04 0.76 5.86 -105.06 -0.62 0.15 16 14 C -0.11 -1.85 9.36 -39.59 -0.37 -2.22 16 15 C -0.07 -1.03 9.99 -39.80 -0.40 -1.43 16 16 C -0.21 -3.30 6.56 -38.39 -0.25 -3.55 16 17 S 0.06 0.68 23.17 -107.50 -2.49 -1.81 16 18 C 0.06 0.75 12.10 51.12 0.62 1.37 16 19 N -0.46 -7.71 10.57 -13.00 -0.14 -7.85 16 20 C 0.09 1.58 6.99 -84.98 -0.59 0.99 16 21 C -0.10 -1.93 9.49 -38.49 -0.37 -2.29 16 22 C -0.06 -1.22 9.35 -39.65 -0.37 -1.59 16 23 C -0.23 -5.30 9.73 -39.28 -0.38 -5.69 16 24 H 0.29 6.23 8.30 -40.82 -0.34 5.90 16 25 H 0.12 3.01 6.19 -52.49 -0.32 2.68 16 26 H 0.09 1.96 6.14 -52.49 -0.32 1.64 16 27 H 0.13 1.94 6.15 -52.49 -0.32 1.61 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.13 2.50 6.12 -52.49 -0.32 2.17 16 31 H 0.09 1.69 6.15 -52.49 -0.32 1.37 16 32 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 289.80 15.07 4.37 4.37 Total: -1.00 -27.12 289.80 -10.20 -37.31 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -2.43 Total: 7.04 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -5.08 Total: -33.24 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.47 Total: -25.96 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.49 Total: -1.81 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.12 -10.20 -37.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.500 kcal (2) G-P(sol) polarization free energy of solvation -27.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds