Wall clock time and date at job start Tue Mar 31 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39496 * 120.12828 * 250.63678 * 3 2 1 5 5 C 1.39020 * 119.77213 * 179.97438 * 4 3 2 6 6 C 1.48289 * 119.98190 * 180.02562 * 5 4 3 7 7 C 1.39286 * 120.16192 * 309.97500 * 6 5 4 8 8 C 1.38011 * 119.94563 * 180.02562 * 7 6 5 9 9 C 1.38438 * 120.26967 * 0.02562 * 8 7 6 10 10 C 1.38121 * 120.32728 * 359.97438 * 9 8 7 11 11 C 1.38751 * 120.04718 * 359.72151 * 10 9 8 12 12 O 1.35670 * 120.13722 * 180.29607 * 11 10 9 13 13 C 1.34816 * 116.99684 * 354.40279 * 12 11 10 14 14 H 1.08001 * 119.99915 * 5.05226 * 13 12 11 15 15 C 1.38643 * 119.99615 * 185.05418 * 13 12 11 16 16 N 1.31560 * 119.99844 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00104 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46795 * 90.00310 * 17 15 13 19 19 H 1.48500 * 109.47266 * 209.99988 * 17 15 13 20 20 H 1.48496 * 109.47118 * 330.00168 * 17 15 13 21 21 C 1.39642 * 120.03633 * 359.97438 * 5 4 3 22 22 C 1.37859 * 120.26522 * 0.02562 * 21 5 4 23 23 C 1.38741 * 120.22787 * 359.97438 * 22 21 5 24 24 O 1.35690 * 120.01957 * 179.97438 * 23 22 21 25 25 H 1.07998 * 120.11570 * 359.95477 * 4 3 2 26 26 H 1.07997 * 120.02226 * 0.02562 * 7 6 5 27 27 H 1.08003 * 119.86576 * 179.97438 * 8 7 6 28 28 H 1.08002 * 119.83549 * 179.97438 * 9 8 7 29 29 H 1.07994 * 119.97740 * 180.02562 * 10 9 8 30 30 H 0.97005 * 120.00254 * 179.97438 * 16 15 13 31 31 H 1.07996 * 119.86811 * 179.72653 * 21 5 4 32 32 H 1.08001 * 119.88761 * 179.97438 * 22 21 5 33 33 H 0.96695 * 114.00809 * 270.02606 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2681 0.4010 1.1383 5 6 4.6582 0.3982 1.1303 6 6 5.4070 0.8223 2.3379 7 6 5.0926 2.0227 2.9707 8 6 5.7928 2.4133 4.0940 9 6 6.8081 1.6170 4.5955 10 6 7.1292 0.4245 3.9769 11 6 6.4298 0.0158 2.8504 12 8 6.7397 -1.1581 2.2449 13 6 7.8123 -1.8253 2.7161 14 1 8.3323 -1.4629 3.5906 15 6 8.2477 -2.9765 2.0779 16 7 9.2947 -3.6273 2.5374 17 14 7.3479 -3.6035 0.5658 18 1 7.9464 -3.0002 -0.6520 19 1 7.4679 -5.0820 0.4959 20 1 5.9140 -3.2268 0.6514 21 6 5.3499 -0.0047 -0.0139 22 6 4.6596 -0.4007 -1.1397 23 6 3.2722 -0.4022 -1.1438 24 8 2.5971 -0.7922 -2.2543 25 1 2.7319 0.7123 2.0226 26 1 4.3016 2.6471 2.5825 27 1 5.5482 3.3445 4.5834 28 1 7.3517 1.9297 5.4747 29 1 7.9220 -0.1925 4.3731 30 1 9.5992 -4.4330 2.0912 31 1 6.4298 -0.0016 -0.0186 32 1 5.2007 -0.7108 -2.0214 33 1 2.4016 -0.0720 -2.8692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242565253.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:05 Heat of formation + Delta-G solvation = 11.982039 kcal Electronic energy + Delta-G solvation = -20552.138433 eV Core-core repulsion = 17316.059445 eV Total energy + Delta-G solvation = -3236.078988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.12157 -39.16897 -37.02117 -36.52360 -36.22413 -32.55122 -31.77701 -31.32639 -29.40007 -28.05749 -25.40746 -23.83790 -23.22316 -21.34999 -21.18736 -19.02864 -18.20492 -17.90665 -16.99864 -15.97069 -15.74258 -15.31772 -14.89064 -14.28016 -13.97184 -13.95307 -13.89350 -13.69655 -13.41389 -13.08426 -12.84007 -12.52902 -12.31522 -12.29339 -12.01998 -11.84541 -11.45132 -10.93377 -10.92158 -10.83281 -10.61013 -10.26951 -9.53984 -9.02871 -8.95621 -8.88283 -8.06338 -7.42871 -6.53567 -4.20465 0.75926 1.16097 1.95677 2.13510 2.68453 3.03156 3.14148 3.19439 3.35082 3.73506 3.90421 4.06233 4.13747 4.36301 4.65081 4.90238 4.95825 4.98781 5.35497 5.40974 5.46092 5.59389 5.68625 5.82334 5.90535 6.04916 6.16535 6.28658 6.39727 6.55526 6.63053 6.70172 6.97152 7.04107 7.15277 7.44676 7.46207 7.53190 7.65682 7.89825 8.80827 9.39857 10.53334 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.007242 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.023967 B = 3865.529481 C = 5594.222982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.269 3.731 3 C -0.064 4.064 4 C -0.053 4.053 5 C -0.014 4.014 6 C -0.142 4.142 7 C -0.059 4.059 8 C -0.207 4.207 9 C -0.067 4.067 10 C -0.220 4.220 11 C 0.174 3.826 12 O -0.204 6.204 13 C -0.392 4.392 14 H 0.108 0.892 15 C 0.069 3.931 16 N -0.873 5.873 17 Si 0.893 3.107 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.252 1.252 21 C -0.048 4.048 22 C -0.145 4.145 23 C 0.141 3.859 24 O -0.494 6.494 25 H 0.136 0.864 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.281 0.719 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 9.802 -4.826 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.046 4.046 3 C -0.068 4.068 4 C -0.074 4.074 5 C -0.014 4.014 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.226 4.226 9 C -0.085 4.085 10 C -0.239 4.239 11 C 0.121 3.879 12 O -0.108 6.108 13 C -0.467 4.467 14 H 0.125 0.875 15 C -0.136 4.136 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.176 1.176 21 C -0.067 4.067 22 C -0.163 4.163 23 C 0.094 3.906 24 O -0.304 6.304 25 H 0.154 0.846 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.154 0.846 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.003 8.895 -4.795 12.890 hybrid contribution 0.364 -0.095 -0.646 0.748 sum -7.639 8.799 -5.442 12.861 Atomic orbital electron populations 1.81190 1.11995 1.09508 1.07793 1.25494 0.92431 0.93201 0.93427 1.16252 0.84494 1.09198 0.96893 1.21152 0.93310 0.96859 0.96072 1.18542 0.91611 0.97999 0.93241 1.17709 1.01228 0.97042 0.98342 1.20723 0.98171 0.94141 0.94680 1.20605 1.00811 1.01453 0.99682 1.20916 0.95863 0.93681 0.98060 1.21255 1.04667 0.99222 0.98721 1.19018 0.92274 0.85343 0.91281 1.83568 1.44985 1.27994 1.54248 1.20774 1.04332 1.07595 1.14014 0.87469 1.24440 0.95414 0.95137 0.98593 1.69636 1.22985 1.17909 1.40478 0.86351 0.81767 0.78132 0.81944 1.19552 1.20715 1.17582 1.21490 1.01219 0.93144 0.90837 1.21287 0.92456 1.02286 1.00272 1.18352 0.89748 0.96415 0.86128 1.84784 1.76572 1.37528 1.31513 0.84614 0.86540 0.87134 0.87037 0.84628 0.90865 0.84294 0.84451 0.75239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.86 18.54 41.84 0.78 -6.08 16 2 C 0.27 3.91 14.86 -22.47 -0.33 3.58 16 3 C -0.06 -0.89 5.74 -106.75 -0.61 -1.50 16 4 C -0.05 -0.75 9.20 -38.82 -0.36 -1.11 16 5 C -0.01 -0.22 5.27 -104.95 -0.55 -0.77 16 6 C -0.14 -2.46 5.48 -104.72 -0.57 -3.04 16 7 C -0.06 -0.88 9.50 -39.27 -0.37 -1.25 16 8 C -0.21 -3.03 10.03 -39.59 -0.40 -3.43 16 9 C -0.07 -1.08 10.03 -39.55 -0.40 -1.47 16 10 C -0.22 -4.26 9.16 -39.43 -0.36 -4.62 16 11 C 0.17 3.58 6.56 -38.74 -0.25 3.33 16 12 O -0.20 -4.80 6.95 0.33 0.00 -4.79 16 13 C -0.39 -10.16 9.95 30.88 0.31 -9.85 16 14 H 0.11 2.85 5.44 -52.49 -0.29 2.57 16 15 C 0.07 1.81 5.49 -17.52 -0.10 1.71 16 16 N -0.87 -23.99 13.96 55.48 0.77 -23.21 16 17 Si 0.89 20.35 28.62 -169.99 -4.86 15.49 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.25 -5.79 7.11 56.52 0.40 -5.39 16 21 C -0.05 -0.75 8.76 -39.20 -0.34 -1.10 16 22 C -0.14 -1.98 9.96 -39.53 -0.39 -2.37 16 23 C 0.14 1.87 6.71 -38.65 -0.26 1.62 16 24 O -0.49 -5.81 12.92 -18.77 -0.24 -6.05 16 25 H 0.14 1.68 8.03 -52.49 -0.42 1.26 16 26 H 0.12 1.40 8.04 -52.49 -0.42 0.98 16 27 H 0.11 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.14 2.78 5.64 -52.49 -0.30 2.49 16 30 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.14 2.28 7.70 -52.49 -0.40 1.87 16 32 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.39 2.56 9.06 45.56 0.41 2.98 16 LS Contribution 305.40 15.07 4.60 4.60 Total: -1.00 -29.23 305.40 -5.77 -35.01 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -1.82 Total: 5.31 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -5.00 Total: -20.27 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 1.55 Total: -29.29 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.24 Total: -10.84 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.86 Total: 15.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.23 -5.77 -35.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242565253.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.987 kcal (2) G-P(sol) polarization free energy of solvation -29.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds