Wall clock time and date at job start Tue Mar 31 2020 05:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48506 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47323 * 299.99897 * 3 2 1 6 6 H 1.48503 * 109.46937 * 60.00122 * 3 2 1 7 7 C 1.39922 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99914 * 197.91073 * 7 2 1 9 9 C 1.41419 * 120.00363 * 17.90978 * 7 2 1 10 10 C 1.40799 * 120.18258 * 24.47146 * 9 7 2 11 11 C 1.37678 * 119.98802 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.37791 * 359.72217 * 11 10 9 13 13 C 1.39694 * 120.38071 * 0.55091 * 12 11 10 14 14 C 1.48408 * 120.00224 * 179.72117 * 13 12 11 15 15 C 1.39752 * 120.39582 * 179.73267 * 14 13 12 16 16 N 1.31100 * 120.90968 * 180.02562 * 15 14 13 17 17 C 1.33503 * 122.33891 * 359.97438 * 16 15 14 18 18 S 1.76052 * 130.14506 * 179.97438 * 17 16 15 19 19 C 1.75271 * 92.25549 * 180.02562 * 18 17 16 20 20 C 1.31768 * 111.47014 * 0.02562 * 19 18 17 21 21 C 1.39941 * 120.38738 * 0.02562 * 17 16 15 22 22 C 1.38815 * 120.39556 * 359.70712 * 14 13 12 23 23 C 1.38767 * 119.99655 * 359.45586 * 13 12 11 24 24 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00623 * 0.04523 * 10 9 7 26 26 H 1.08002 * 119.81185 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.81000 * 180.27624 * 12 11 10 28 28 H 1.07998 * 119.54159 * 0.27469 * 15 14 13 29 29 H 1.07997 * 124.26588 * 180.02562 * 19 18 17 30 30 H 1.07996 * 122.58161 * 180.02562 * 20 19 18 31 31 H 1.08004 * 120.68726 * 0.04485 * 22 14 13 32 32 H 1.08000 * 120.18516 * 180.29469 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2343 0.2882 9 6 1.3523 -2.4070 -0.3755 10 6 0.2222 -2.3608 -1.2142 11 6 -0.4133 -3.5269 -1.5774 12 6 0.0555 -4.7492 -1.1272 13 6 1.1720 -4.8128 -0.2900 14 6 1.6637 -6.1272 0.1926 15 6 2.7832 -6.2008 1.0260 16 7 3.2265 -7.3566 1.4578 17 6 2.6429 -8.5122 1.1319 18 16 3.0581 -10.1615 1.5869 19 6 1.7250 -10.8257 0.6631 20 6 1.0323 -9.8772 0.0657 21 6 1.5166 -8.5271 0.3015 22 6 1.0169 -7.2983 -0.1779 23 6 1.8245 -3.6473 0.0860 24 1 -0.4850 0.8401 0.0004 25 1 -0.1458 -1.4109 -1.5727 26 1 -1.2796 -3.4882 -2.2211 27 1 -0.4474 -5.6586 -1.4214 28 1 3.2876 -5.2928 1.3215 29 1 1.4997 -11.8795 0.5923 30 1 0.1707 -10.0867 -0.5508 31 1 0.1498 -7.2692 -0.8212 32 1 2.6908 -3.6932 0.7293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242682259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:36 Heat of formation + Delta-G solvation = 64.942766 kcal Electronic energy + Delta-G solvation = -17729.774867 eV Core-core repulsion = 14938.745300 eV Total energy + Delta-G solvation = -2791.029567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09111 -37.62540 -35.63627 -34.03500 -32.35349 -30.33489 -29.73565 -28.06818 -25.51372 -24.08211 -23.49898 -21.56010 -20.53953 -19.86685 -18.15533 -17.25731 -16.43755 -15.58267 -15.52553 -14.93277 -14.34300 -14.26598 -14.21240 -13.44235 -13.15274 -12.93760 -12.51612 -12.47704 -12.02208 -11.83181 -11.63450 -11.30058 -11.15513 -10.92208 -10.78957 -10.55289 -10.02048 -9.90753 -9.64533 -9.26169 -9.12218 -8.71012 -8.11705 -7.62625 -7.08114 -6.85487 -4.47088 0.67581 1.10599 1.34558 1.96161 2.29892 2.69126 2.90020 3.03679 3.08579 3.13285 3.87015 4.02465 4.49833 4.57233 4.77880 4.89145 5.16664 5.23717 5.50473 5.56406 5.57915 5.80199 5.94716 6.17170 6.23153 6.28351 6.38038 6.70483 6.80728 6.94729 7.10004 7.19409 7.40708 7.67549 7.87247 7.91305 7.96031 8.13714 8.49564 8.77317 8.81415 10.09210 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.037494 B = 0.003590 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.602108 B = 7797.402032 C = 8462.153367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.462 4.462 8 H 0.080 0.920 9 C 0.108 3.892 10 C -0.150 4.150 11 C -0.107 4.107 12 C -0.219 4.219 13 C -0.040 4.040 14 C -0.055 4.055 15 C 0.138 3.862 16 N -0.460 5.460 17 C 0.041 3.959 18 S 0.109 5.891 19 C -0.200 4.200 20 C -0.108 4.108 21 C -0.125 4.125 22 C -0.046 4.046 23 C -0.202 4.202 24 H 0.281 0.719 25 H 0.120 0.880 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -13.134 -0.256 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.492 4.492 8 H 0.098 0.902 9 C 0.105 3.895 10 C -0.170 4.170 11 C -0.125 4.125 12 C -0.239 4.239 13 C -0.041 4.041 14 C -0.060 4.060 15 C -0.031 4.031 16 N -0.169 5.169 17 C -0.203 4.203 18 S 0.369 5.631 19 C -0.334 4.334 20 C -0.139 4.139 21 C -0.135 4.135 22 C -0.073 4.073 23 C -0.221 4.221 24 H 0.092 0.908 25 H 0.138 0.862 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.641 -13.787 1.201 14.089 hybrid contribution -1.630 1.446 -1.363 2.570 sum 1.012 -12.341 -0.162 12.384 Atomic orbital electron populations 1.69821 1.07627 1.29304 1.35022 1.25908 0.94725 1.01426 0.92111 0.86264 0.81066 0.80846 0.78611 1.18295 1.19673 1.19942 1.19613 0.98285 0.91120 1.40141 0.90163 1.17535 0.91268 0.91836 0.88836 1.21476 0.98726 0.97017 0.99768 1.20629 0.98824 0.93030 1.00023 1.20391 1.00343 0.96431 1.06722 1.18097 0.96999 0.89490 0.99490 1.19955 0.95241 0.94235 0.96527 1.23076 0.93032 0.94550 0.92417 1.67105 1.30335 0.96671 1.22772 1.23459 0.97218 0.98051 1.01530 1.84041 1.31441 0.94228 1.53432 1.25061 1.00718 1.03346 1.04281 1.20799 1.01323 0.90065 1.01686 1.20068 0.97543 0.94559 1.01289 1.21481 0.98982 0.89331 0.97554 1.21060 1.03210 0.91903 1.05949 0.90791 0.86187 0.88977 0.89058 0.81244 0.81320 0.83639 0.84103 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.96 55.55 0.61 -19.10 16 2 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -11.71 9.05 -37.74 -0.34 -12.05 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.11 2.72 5.57 -106.86 -0.60 2.13 16 10 C -0.15 -3.71 8.69 -38.82 -0.34 -4.05 16 11 C -0.11 -2.35 10.01 -39.71 -0.40 -2.75 16 12 C -0.22 -4.58 9.44 -38.97 -0.37 -4.95 16 13 C -0.04 -0.84 5.87 -104.97 -0.62 -1.46 16 14 C -0.06 -1.03 5.88 -104.93 -0.62 -1.65 16 15 C 0.14 2.49 10.59 -17.30 -0.18 2.31 16 16 N -0.46 -8.30 10.36 -11.49 -0.12 -8.42 16 17 C 0.04 0.68 7.65 -16.19 -0.12 0.55 16 18 S 0.11 1.39 23.23 -107.50 -2.50 -1.10 16 19 C -0.20 -2.12 11.01 28.84 0.32 -1.80 16 20 C -0.11 -1.29 10.39 -38.64 -0.40 -1.69 16 21 C -0.12 -1.93 6.05 -105.36 -0.64 -2.57 16 22 C -0.05 -0.76 9.58 -38.30 -0.37 -1.13 16 23 C -0.20 -4.63 9.18 -38.53 -0.35 -4.99 16 24 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 25 H 0.12 3.06 6.15 -52.49 -0.32 2.73 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.09 1.65 6.23 -52.49 -0.33 1.32 16 28 H 0.17 2.84 6.20 -52.49 -0.33 2.51 16 29 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.14 2.06 6.26 -52.48 -0.33 1.73 16 32 H 0.10 2.10 6.20 -52.49 -0.33 1.77 16 LS Contribution 290.97 15.07 4.38 4.38 Total: -1.00 -27.31 290.97 -10.21 -37.52 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -2.45 Total: 6.09 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -5.11 Total: -32.35 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 0.49 Total: -27.52 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.50 Total: -1.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.31 -10.21 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242682259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.460 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds