Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48506 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47323 * 299.99897 * 3 2 1 6 6 H 1.48503 * 109.46937 * 60.00122 * 3 2 1 7 7 C 1.39922 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99914 * 197.91073 * 7 2 1 9 9 C 1.41419 * 120.00363 * 17.90978 * 7 2 1 10 10 C 1.40799 * 120.18258 * 24.47146 * 9 7 2 11 11 C 1.37678 * 119.98802 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.37791 * 359.72217 * 11 10 9 13 13 C 1.39694 * 120.38071 * 0.55091 * 12 11 10 14 14 C 1.48408 * 120.00224 * 179.72117 * 13 12 11 15 15 C 1.39752 * 120.39582 * 179.73267 * 14 13 12 16 16 N 1.31100 * 120.90968 * 180.02562 * 15 14 13 17 17 C 1.33503 * 122.33891 * 359.97438 * 16 15 14 18 18 S 1.76052 * 130.14506 * 179.97438 * 17 16 15 19 19 C 1.75271 * 92.25549 * 180.02562 * 18 17 16 20 20 C 1.31768 * 111.47014 * 0.02562 * 19 18 17 21 21 C 1.39941 * 120.38738 * 0.02562 * 17 16 15 22 22 C 1.38815 * 120.39556 * 359.70712 * 14 13 12 23 23 C 1.38767 * 119.99655 * 359.45586 * 13 12 11 24 24 H 0.97005 * 119.99689 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00623 * 0.04523 * 10 9 7 26 26 H 1.08002 * 119.81185 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.81000 * 180.27624 * 12 11 10 28 28 H 1.07998 * 119.54159 * 0.27469 * 15 14 13 29 29 H 1.07997 * 124.26588 * 180.02562 * 19 18 17 30 30 H 1.07996 * 122.58161 * 180.02562 * 20 19 18 31 31 H 1.08004 * 120.68726 * 0.04485 * 22 14 13 32 32 H 1.08000 * 120.18516 * 180.29469 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0487 -1.2343 0.2882 9 6 1.3523 -2.4070 -0.3755 10 6 0.2222 -2.3608 -1.2142 11 6 -0.4133 -3.5269 -1.5774 12 6 0.0555 -4.7492 -1.1272 13 6 1.1720 -4.8128 -0.2900 14 6 1.6637 -6.1272 0.1926 15 6 2.7832 -6.2008 1.0260 16 7 3.2265 -7.3566 1.4578 17 6 2.6429 -8.5122 1.1319 18 16 3.0581 -10.1615 1.5869 19 6 1.7250 -10.8257 0.6631 20 6 1.0323 -9.8772 0.0657 21 6 1.5166 -8.5271 0.3015 22 6 1.0169 -7.2983 -0.1779 23 6 1.8245 -3.6473 0.0860 24 1 -0.4850 0.8401 0.0004 25 1 -0.1458 -1.4109 -1.5727 26 1 -1.2796 -3.4882 -2.2211 27 1 -0.4474 -5.6586 -1.4214 28 1 3.2876 -5.2928 1.3215 29 1 1.4997 -11.8795 0.5923 30 1 0.1707 -10.0867 -0.5508 31 1 0.1498 -7.2692 -0.8212 32 1 2.6908 -3.6932 0.7293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242682259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = 51.991133 kcal Electronic energy + Delta-G solvation = -17730.336492 eV Core-core repulsion = 14938.745300 eV Total energy + Delta-G solvation = -2791.591192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37619 -39.29335 -36.76643 -35.73464 -33.86901 -31.94380 -31.17409 -29.54303 -27.29060 -25.39084 -24.82106 -22.90952 -22.21907 -21.26956 -19.38415 -18.93007 -17.74289 -17.23127 -16.80572 -16.46178 -15.77826 -15.59289 -15.31974 -15.07058 -14.65608 -14.37631 -14.02211 -13.60817 -13.58183 -13.30598 -13.12379 -12.78025 -12.72756 -12.52540 -12.13869 -11.86868 -11.65509 -11.41680 -11.35436 -10.99240 -10.48683 -9.96534 -9.42890 -9.30809 -8.66741 -8.56232 -6.36016 -0.51670 -0.21755 0.26374 0.97207 0.98799 1.12982 1.36168 1.39704 1.52342 1.54744 2.21257 2.57563 2.86182 3.34749 3.57884 3.71496 3.75987 3.86688 4.06051 4.27970 4.47115 4.53678 4.69502 4.73924 4.88781 5.03056 5.07515 5.09685 5.24161 5.28212 5.44102 5.52432 5.65531 5.94926 6.05992 6.12428 6.32618 6.65047 6.68872 6.92867 6.98978 8.32757 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.037494 B = 0.003590 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.602108 B = 7797.402032 C = 8462.153367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.037 3.963 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.079 3.921 10 C -0.181 4.181 11 C -0.108 4.108 12 C -0.217 4.217 13 C -0.034 4.034 14 C -0.081 4.081 15 C 0.126 3.874 16 N -0.478 5.478 17 C 0.011 3.989 18 S 0.125 5.875 19 C -0.175 4.175 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.038 4.038 23 C -0.221 4.221 24 H 0.288 0.712 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.214 0.786 30 H 0.180 0.820 31 H 0.163 0.837 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 -16.114 -0.691 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.094 0.906 9 C 0.077 3.923 10 C -0.200 4.200 11 C -0.126 4.126 12 C -0.236 4.236 13 C -0.035 4.035 14 C -0.086 4.086 15 C -0.043 4.043 16 N -0.188 5.188 17 C -0.232 4.232 18 S 0.385 5.615 19 C -0.308 4.308 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.065 4.065 23 C -0.241 4.241 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.145 0.855 28 H 0.184 0.816 29 H 0.231 0.769 30 H 0.197 0.803 31 H 0.180 0.820 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.995 -16.789 0.765 16.924 hybrid contribution -1.428 1.991 -1.186 2.722 sum 0.568 -14.797 -0.420 14.814 Atomic orbital electron populations 1.69871 1.08926 1.30504 1.35790 1.26702 0.95463 1.04395 0.91206 0.85195 0.79455 0.76375 0.78919 1.18275 1.18852 1.19156 1.19845 0.98438 0.92473 1.42259 0.90622 1.17873 0.92071 0.92797 0.89552 1.21436 0.99786 0.97432 1.01381 1.20936 0.99182 0.92654 0.99819 1.20792 0.99926 0.97307 1.05618 1.18344 0.96470 0.90198 0.98462 1.19798 0.96547 0.93808 0.98421 1.23042 0.93378 0.94909 0.92972 1.67120 1.31043 0.97232 1.23416 1.24168 0.97949 0.99079 1.01980 1.84074 1.32468 0.91556 1.53428 1.25606 0.98370 1.05208 1.01656 1.21043 1.02854 0.88054 1.02977 1.20480 0.97084 0.96008 1.00474 1.21714 0.98917 0.88981 0.96853 1.21234 1.03964 0.92198 1.06669 0.90112 0.87895 0.86409 0.85501 0.81557 0.76921 0.80296 0.81983 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.65 10.96 21.82 0.24 -42.41 16 2 C 0.04 1.86 5.14 85.25 0.44 2.30 16 3 Si 0.98 37.99 29.59 68.60 2.03 40.02 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.27 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.50 -26.79 9.05 23.46 0.21 -26.57 16 8 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.08 4.22 5.57 -21.32 -0.12 4.10 16 10 C -0.18 -9.29 8.69 22.76 0.20 -9.09 16 11 C -0.11 -4.75 10.01 22.18 0.22 -4.53 16 12 C -0.22 -8.84 9.44 22.67 0.21 -8.63 16 13 C -0.03 -1.45 5.87 -20.09 -0.12 -1.57 16 14 C -0.08 -3.01 5.88 -20.06 -0.12 -3.13 16 15 C 0.13 4.64 10.59 85.17 0.90 5.54 16 16 N -0.48 -17.31 10.36 -190.25 -1.97 -19.28 16 17 C 0.01 0.36 7.65 84.85 0.65 1.01 16 18 S 0.13 2.83 23.23 -56.49 -1.31 1.52 16 19 C -0.17 -2.80 11.01 67.08 0.74 -2.06 16 20 C -0.12 -2.30 10.39 23.36 0.24 -2.05 16 21 C -0.13 -3.68 6.05 -20.34 -0.12 -3.80 16 22 C -0.04 -1.17 9.58 23.10 0.22 -0.95 16 23 C -0.22 -10.65 9.18 22.95 0.21 -10.44 16 24 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 25 H 0.10 5.53 6.15 -2.91 -0.02 5.52 16 26 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.13 4.18 6.23 -2.91 -0.02 4.16 16 28 H 0.17 5.97 6.20 -2.91 -0.02 5.95 16 29 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.16 4.16 6.26 -2.91 -0.02 4.14 16 32 H 0.10 4.70 6.20 -2.91 -0.02 4.68 16 Total: -1.00 -62.29 290.97 3.92 -58.37 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 1.17 Total: 21.65 kcal Atomic # 6 Polarization: -63.63 SS G_CDS: 3.77 Total: -59.86 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.73 Total: -61.69 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.31 Total: 1.52 kcal Total: -62.29 3.92 -58.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242682259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.360 kcal (2) G-P(sol) polarization free energy of solvation -62.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds