Wall clock time and date at job start Tue Mar 31 2020 05:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39576 * 120.45536 * 113.01008 * 3 2 1 5 5 C 1.37721 * 120.18462 * 180.02562 * 4 3 2 6 6 C 1.39812 * 121.17041 * 359.95447 * 5 4 3 7 7 C 1.48333 * 119.52964 * 180.02562 * 6 5 4 8 8 C 1.39461 * 120.07845 * 179.74708 * 7 6 5 9 9 C 1.38049 * 120.02919 * 179.73876 * 8 7 6 10 10 C 1.38197 * 120.21416 * 0.51352 * 9 8 7 11 11 C 1.39037 * 120.16781 * 359.76651 * 10 9 8 12 12 S 1.76204 * 120.01493 * 179.97438 * 11 10 9 13 13 C 1.38776 * 119.96429 * 359.97438 * 11 10 9 14 14 C 1.38590 * 120.93108 * 0.04259 * 6 5 4 15 15 C 1.40612 * 119.73454 * 0.23177 * 14 6 5 16 16 C 1.40839 * 120.55686 * 179.74703 * 15 14 6 17 17 H 1.08001 * 120.00154 * 204.48841 * 16 15 14 18 18 C 1.40234 * 119.99691 * 24.49259 * 16 15 14 19 19 N 1.30665 * 120.00377 * 17.43235 * 18 16 15 20 20 Si 1.86797 * 120.00149 * 197.43109 * 18 16 15 21 21 H 1.48501 * 109.47202 * 89.99988 * 20 18 16 22 22 H 1.48504 * 109.47268 * 209.99983 * 20 18 16 23 23 H 1.48499 * 109.46992 * 329.99899 * 20 18 16 24 24 H 1.08003 * 119.90877 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.41388 * 179.97438 * 5 4 3 26 26 H 1.07992 * 119.98512 * 359.97438 * 8 7 6 27 27 H 1.08006 * 119.89515 * 180.25591 * 9 8 7 28 28 H 1.08001 * 119.91881 * 179.74013 * 10 9 8 29 29 H 1.34505 * 102.99806 * 270.01463 * 12 11 10 30 30 H 1.08004 * 120.10756 * 179.97438 * 13 11 10 31 31 H 1.08002 * 120.13457 * 179.97438 * 14 6 5 32 32 H 0.96994 * 120.00225 * 184.64664 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2752 0.4713 -1.1074 5 6 4.6524 0.4689 -1.1017 6 6 5.3706 0.0006 0.0027 7 6 6.8535 0.0151 -0.0299 8 6 7.5813 -0.4444 1.0674 9 6 8.9613 -0.4354 1.0338 10 6 9.6268 0.0379 -0.0811 11 6 8.9098 0.5034 -1.1776 12 16 9.7624 1.1065 -2.5967 13 6 7.5223 0.4927 -1.1537 14 6 4.7165 -0.4772 1.1273 15 6 3.3110 -0.4977 1.1606 16 6 2.6286 -0.9845 2.2924 17 1 1.6240 -1.3684 2.1935 18 6 3.2536 -0.9707 3.5476 19 7 4.3024 -0.2173 3.7470 20 14 2.5869 -2.0293 4.9348 21 1 3.2422 -3.3615 4.8997 22 1 2.8682 -1.3735 6.2371 23 1 1.1204 -2.1946 4.7703 24 1 2.7410 0.8384 -1.9713 25 1 5.1871 0.8355 -1.9655 26 1 7.0651 -0.8108 1.9423 27 1 9.5228 -0.7956 1.8832 28 1 10.7066 0.0466 -0.1006 29 1 9.9086 2.4163 -2.3278 30 1 6.9630 0.8541 -2.0040 31 1 5.2842 -0.8363 1.9731 32 1 4.7750 -0.2579 4.5931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242867672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:42 Heat of formation + Delta-G solvation = 63.799080 kcal Electronic energy + Delta-G solvation = -17880.904140 eV Core-core repulsion = 15089.824979 eV Total energy + Delta-G solvation = -2791.079161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 281.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.19019 -37.45963 -35.18695 -34.24727 -32.03155 -31.01501 -29.94111 -28.43801 -25.94035 -23.47648 -22.81534 -20.94381 -20.73493 -18.09762 -17.71759 -17.09705 -16.39881 -15.62601 -14.96621 -14.93313 -14.09846 -13.76660 -13.52351 -13.37758 -13.01021 -12.87374 -12.61814 -12.32195 -11.88373 -11.73804 -11.63805 -11.39630 -11.22108 -11.09349 -10.99796 -10.68878 -10.52803 -10.09355 -9.75496 -9.59001 -8.96099 -8.73511 -8.17715 -7.86312 -7.37108 -7.13070 -4.80290 1.01972 1.30216 1.78073 2.27781 2.57793 2.84679 2.88207 2.92617 3.01140 3.64661 3.78949 3.87219 4.33310 4.38887 5.02114 5.08070 5.29238 5.36652 5.43912 5.56489 5.62258 5.83256 5.97864 6.05790 6.32317 6.44421 6.52075 6.59559 6.65506 6.81666 6.90297 7.03247 7.16238 7.39773 7.57383 7.67210 7.78482 8.11313 8.34316 8.44493 8.77221 9.67203 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.005045 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.411291 B = 5548.626910 C = 7027.715313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.299 3.701 3 C -0.184 4.184 4 C -0.027 4.027 5 C -0.236 4.236 6 C -0.023 4.023 7 C -0.024 4.024 8 C -0.084 4.084 9 C -0.127 4.127 10 C -0.089 4.089 11 C -0.110 4.110 12 S -0.142 6.142 13 C -0.070 4.070 14 C -0.140 4.140 15 C 0.148 3.852 16 C -0.428 4.428 17 H 0.087 0.913 18 C 0.077 3.923 19 N -0.766 5.766 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.257 1.257 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.816 -0.237 -2.278 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.010 4.010 3 C -0.190 4.190 4 C -0.048 4.048 5 C -0.256 4.256 6 C -0.025 4.025 7 C -0.026 4.026 8 C -0.102 4.102 9 C -0.147 4.147 10 C -0.110 4.110 11 C -0.222 4.222 12 S 0.016 5.984 13 C -0.090 4.090 14 C -0.159 4.159 15 C 0.143 3.857 16 C -0.455 4.455 17 H 0.105 0.895 18 C -0.145 4.145 19 N -0.389 5.389 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.181 1.181 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.154 0.846 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.036 0.964 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.640 0.014 -2.911 11.030 hybrid contribution -0.142 0.342 1.799 1.837 sum 10.498 0.356 -1.112 10.562 Atomic orbital electron populations 1.81024 1.12746 1.14078 1.10887 1.25787 0.92728 0.91319 0.91208 1.16996 0.83281 1.18472 1.00212 1.20386 0.93565 0.95703 0.95145 1.20152 0.93102 1.13425 0.98875 1.18458 0.89326 0.99632 0.95042 1.19155 0.93644 0.96758 0.92995 1.21657 0.93691 0.96437 0.98433 1.21091 0.94481 1.01039 0.98051 1.21455 0.99609 0.97657 0.92257 1.21014 0.95495 1.08457 0.97187 1.85856 1.75864 1.10296 1.26423 1.21725 0.92297 0.97004 0.98007 1.21426 0.93814 1.03784 0.96878 1.18350 0.91177 0.86391 0.89776 1.19803 1.01808 1.32638 0.91265 0.89521 1.26083 0.94390 0.93576 1.00487 1.69712 1.15443 1.27295 1.26402 0.86176 0.81089 0.80297 0.78821 1.18553 1.19728 1.18063 0.88059 0.88037 0.84566 0.85652 0.85594 0.96403 0.84618 0.84981 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.14 18.54 41.84 0.78 -11.37 16 2 C 0.30 6.93 14.28 -22.48 -0.32 6.61 16 3 C -0.18 -4.12 5.95 -104.13 -0.62 -4.74 16 4 C -0.03 -0.54 9.74 -39.27 -0.38 -0.92 16 5 C -0.24 -4.48 9.37 -39.18 -0.37 -4.85 16 6 C -0.02 -0.46 5.86 -105.02 -0.62 -1.08 16 7 C -0.02 -0.41 5.87 -104.92 -0.62 -1.02 16 8 C -0.08 -1.32 9.41 -39.20 -0.37 -1.69 16 9 C -0.13 -1.67 10.02 -39.67 -0.40 -2.06 16 10 C -0.09 -1.15 9.78 -39.30 -0.38 -1.53 16 11 C -0.11 -1.54 6.11 -39.09 -0.24 -1.78 16 12 S -0.14 -1.75 25.77 -107.50 -2.77 -4.52 16 13 C -0.07 -1.08 9.16 -39.02 -0.36 -1.44 16 14 C -0.14 -3.04 8.06 -38.56 -0.31 -3.35 16 15 C 0.15 3.48 5.74 -104.67 -0.60 2.87 16 16 C -0.43 -10.14 8.57 -37.85 -0.32 -10.47 16 17 H 0.09 2.10 7.38 -52.49 -0.39 1.71 16 18 C 0.08 1.68 5.16 -17.30 -0.09 1.59 16 19 N -0.77 -16.70 10.94 55.56 0.61 -16.10 16 20 Si 0.91 16.65 29.60 -169.99 -5.03 11.62 16 21 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 24 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 25 H 0.10 1.67 6.09 -52.48 -0.32 1.35 16 26 H 0.14 2.17 6.14 -52.49 -0.32 1.85 16 27 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.07 0.82 9.07 97.61 0.89 1.71 16 30 H 0.14 1.99 6.13 -52.48 -0.32 1.66 16 31 H 0.13 2.83 4.23 -52.49 -0.22 2.61 16 32 H 0.29 5.66 8.30 -40.82 -0.34 5.32 16 LS Contribution 300.77 15.07 4.53 4.53 Total: -1.00 -24.49 300.77 -8.97 -33.46 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -1.09 Total: 6.23 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -5.99 Total: -23.86 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 1.38 Total: -27.46 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -5.03 Total: 11.62 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.77 Total: -4.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -24.49 -8.97 -33.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242867672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.262 kcal (2) G-P(sol) polarization free energy of solvation -24.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds