Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86802 * 119.99822 * 2 1 4 4 H 1.48493 * 109.47193 * 269.99775 * 3 2 1 5 5 H 1.48495 * 109.47239 * 30.00158 * 3 2 1 6 6 H 1.48499 * 109.46668 * 149.99906 * 3 2 1 7 7 C 1.38648 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99585 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00217 * 180.02562 * 7 2 1 10 10 C 1.35627 * 117.00160 * 185.20414 * 9 7 2 11 11 C 1.38760 * 120.14082 * 6.04492 * 10 9 7 12 12 C 1.38102 * 120.05549 * 180.02562 * 11 10 9 13 13 C 1.38485 * 120.35739 * 359.70506 * 12 11 10 14 14 C 1.37952 * 120.28931 * 0.54821 * 13 12 11 15 15 C 1.39444 * 119.93290 * 359.47578 * 14 13 12 16 16 C 1.47985 * 120.17704 * 180.22399 * 15 14 13 17 17 N 1.32726 * 120.06627 * 131.32183 * 16 15 14 18 18 C 1.32036 * 121.97755 * 180.02562 * 17 16 15 19 19 C 1.37955 * 121.67080 * 359.97438 * 18 17 16 20 20 C 1.39204 * 119.14551 * 0.02562 * 19 18 17 21 21 O 1.34397 * 134.57647 * 179.97438 * 20 19 18 22 22 C 1.34536 * 110.86161 * 180.02562 * 21 20 19 23 23 C 1.34178 * 110.11375 * 359.97438 * 22 21 20 24 24 C 1.40208 * 120.07078 * 311.04878 * 16 15 14 25 25 H 0.97007 * 119.99576 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.97678 * 0.02643 * 11 10 9 27 27 H 1.07999 * 119.82330 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.85882 * 180.27784 * 13 12 11 29 29 H 1.07997 * 120.03515 * 179.74657 * 14 13 12 30 30 H 1.07996 * 119.16685 * 180.02562 * 18 17 16 31 31 H 1.07997 * 120.42376 * 179.97438 * 19 18 17 32 32 H 1.07999 * 124.94181 * 179.97438 * 22 21 20 33 33 H 1.08004 * 126.90811 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4687 -2.1360 0.0014 9 8 3.3569 -1.2008 0.0011 10 6 3.9727 -2.4043 -0.1080 11 6 3.2258 -3.5506 -0.3394 12 6 3.8546 -4.7753 -0.4496 13 6 5.2317 -4.8676 -0.3366 14 6 5.9879 -3.7380 -0.1015 15 6 5.3655 -2.4954 0.0124 16 6 6.1719 -1.2794 0.2597 17 7 5.9840 -0.1947 -0.4818 18 6 6.6824 0.9100 -0.2942 19 6 7.6487 0.9984 0.6863 20 6 7.8938 -0.1056 1.4981 21 8 8.7340 -0.3602 2.5157 22 6 8.5703 -1.6161 2.9694 23 6 7.6124 -2.2395 2.2664 24 6 7.1320 -1.2689 1.2815 25 1 -0.4850 0.8401 -0.0004 26 1 2.1520 -3.4852 -0.4333 27 1 3.2696 -5.6651 -0.6293 28 1 5.7155 -5.8288 -0.4287 29 1 7.0612 -3.8154 -0.0100 30 1 6.4917 1.7665 -0.9239 31 1 8.2084 1.9121 0.8218 32 1 9.1286 -2.0582 3.7813 33 1 7.2635 -3.2525 2.4021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = 45.937105 kcal Electronic energy + Delta-G solvation = -21073.561362 eV Core-core repulsion = 17838.954776 eV Total energy + Delta-G solvation = -3234.606586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.44721 -39.46888 -38.34813 -36.55386 -33.10894 -32.45258 -31.72811 -30.49767 -29.32355 -28.35818 -25.32154 -24.08609 -22.83095 -22.06229 -21.32676 -20.41497 -17.98281 -17.71026 -17.52932 -16.90521 -16.11182 -15.56128 -15.00133 -14.83374 -14.36686 -14.15376 -13.80802 -13.63102 -13.50729 -12.93271 -12.89683 -12.74443 -12.33997 -12.22784 -11.57189 -11.44219 -10.90135 -10.79454 -10.78788 -10.18157 -10.13682 -9.52192 -9.21988 -9.14959 -8.89855 -8.53674 -7.90589 -7.31928 -6.46188 -4.10355 0.83845 1.51034 2.04074 2.24268 2.44930 2.77003 3.23761 3.28826 3.46172 4.03905 4.25653 4.41366 4.51858 4.58257 4.79322 4.85511 5.05917 5.13371 5.23146 5.41500 5.51474 5.55771 5.69420 5.82885 5.95709 5.97849 6.12525 6.21870 6.38631 6.45806 6.57890 6.68802 7.01916 7.06391 7.17105 7.22621 7.53589 7.72399 7.97623 8.38563 8.89443 9.53042 10.60459 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.007887 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.942154 B = 3549.180078 C = 5016.567681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.068 3.932 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.390 4.390 8 H 0.107 0.893 9 O -0.188 6.188 10 C 0.191 3.809 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.212 4.212 14 C -0.048 4.048 15 C -0.139 4.139 16 C 0.268 3.732 17 N -0.470 5.470 18 C 0.123 3.877 19 C -0.183 4.183 20 C 0.087 3.913 21 O -0.195 6.195 22 C -0.015 4.015 23 C -0.177 4.177 24 C -0.185 4.185 25 H 0.280 0.720 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.163 0.837 31 H 0.137 0.863 32 H 0.209 0.791 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 -3.411 3.155 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.090 6.090 10 C 0.135 3.865 11 C -0.243 4.243 12 C -0.080 4.080 13 C -0.231 4.231 14 C -0.067 4.067 15 C -0.142 4.142 16 C 0.127 3.873 17 N -0.180 5.180 18 C -0.030 4.030 19 C -0.204 4.204 20 C 0.033 3.967 21 O -0.095 6.095 22 C -0.079 4.079 23 C -0.197 4.197 24 C -0.188 4.188 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.180 0.820 31 H 0.155 0.845 32 H 0.225 0.775 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.590 -2.762 2.628 15.080 hybrid contribution 0.591 0.576 0.689 1.075 sum 15.182 -2.185 3.317 15.693 Atomic orbital electron populations 1.69653 1.05631 1.28654 1.47157 1.24455 0.94974 0.98966 0.95249 0.86165 0.80431 0.81130 0.79295 1.19550 1.21154 1.17965 1.20832 0.77022 0.96675 1.51963 0.87546 1.83661 1.22245 1.25196 1.77904 1.18993 0.90269 0.85822 0.91385 1.21256 1.01305 0.92058 1.09680 1.20917 0.94342 0.96628 0.96108 1.20533 0.93956 0.97521 1.11126 1.20653 0.98482 0.90640 0.96942 1.17453 0.89887 0.91146 1.15668 1.19216 0.88930 0.91674 0.87515 1.68026 1.24155 0.99026 1.26812 1.22565 0.90000 0.95999 0.94432 1.20893 1.03959 0.97190 0.98375 1.19672 0.91115 0.96130 0.89803 1.83914 1.52544 1.31070 1.41965 1.23978 1.00982 0.82023 1.00920 1.22485 0.99226 1.00835 0.97191 1.20785 1.01852 0.95246 1.00933 0.90968 0.84566 0.86951 0.87032 0.86725 0.81994 0.84479 0.77495 0.82111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.26 13.96 55.48 0.77 -24.48 16 2 C 0.07 1.92 5.49 -17.52 -0.10 1.82 16 3 Si 0.90 22.38 28.62 -169.99 -4.86 17.52 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.39 -11.00 9.90 30.88 0.31 -10.70 16 8 H 0.11 3.03 5.53 -52.49 -0.29 2.74 16 9 O -0.19 -5.03 7.55 0.49 0.00 -5.03 16 10 C 0.19 4.49 6.63 -38.69 -0.26 4.23 16 11 C -0.22 -4.78 9.12 -39.44 -0.36 -5.14 16 12 C -0.06 -1.07 10.03 -39.54 -0.40 -1.47 16 13 C -0.21 -3.42 10.03 -39.60 -0.40 -3.82 16 14 C -0.05 -0.83 8.93 -39.24 -0.35 -1.18 16 15 C -0.14 -2.89 5.60 -104.75 -0.59 -3.48 16 16 C 0.27 5.50 6.06 -82.75 -0.50 5.00 16 17 N -0.47 -9.95 9.65 -9.67 -0.09 -10.04 16 18 C 0.12 2.11 11.13 -17.57 -0.20 1.92 16 19 C -0.18 -2.81 10.13 -39.33 -0.40 -3.21 16 20 C 0.09 1.44 7.49 -38.28 -0.29 1.15 16 21 O -0.19 -2.81 10.57 4.82 0.05 -2.76 16 22 C -0.01 -0.17 11.97 29.30 0.35 0.18 16 23 C -0.18 -2.48 10.31 -37.74 -0.39 -2.87 16 24 C -0.18 -3.30 6.02 -104.94 -0.63 -3.93 16 25 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.14 3.02 5.72 -52.49 -0.30 2.72 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 29 H 0.11 1.68 7.77 -52.49 -0.41 1.27 16 30 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.21 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.16 1.94 7.90 -52.48 -0.41 1.53 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -32.31 296.03 -6.52 -38.83 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.66 Total: 3.00 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -4.19 Total: -21.49 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.68 Total: -34.52 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: 0.05 Total: -7.79 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.31 -6.52 -38.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.769 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds