Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48503 * 109.46871 * 269.99492 * 3 2 1 5 5 H 1.48498 * 109.47341 * 29.99803 * 3 2 1 6 6 H 1.48506 * 109.47271 * 149.99797 * 3 2 1 7 7 C 1.38644 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00143 * 0.02562 * 7 2 1 9 9 O 1.34817 * 119.99765 * 180.02562 * 7 2 1 10 10 C 1.35678 * 116.99782 * 185.05618 * 9 7 2 11 11 C 1.38752 * 120.13285 * 354.39742 * 10 9 7 12 12 C 1.38115 * 120.04720 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32407 * 359.97438 * 12 11 10 14 14 C 1.38016 * 120.26465 * 0.02562 * 13 12 11 15 15 C 1.39279 * 119.94794 * 359.97438 * 14 13 12 16 16 C 1.48307 * 120.15826 * 180.02562 * 15 14 13 17 17 C 1.39886 * 119.95574 * 129.98143 * 16 15 14 18 18 C 1.36531 * 120.62406 * 179.97438 * 17 16 15 19 19 C 1.39080 * 120.22936 * 359.97438 * 18 17 16 20 20 O 1.34875 * 133.22772 * 180.02562 * 19 18 17 21 21 N 1.41336 * 109.36314 * 180.02562 * 20 19 18 22 22 C 1.29731 * 109.76284 * 0.02562 * 21 20 19 23 23 C 1.40524 * 119.72505 * 0.02562 * 19 18 17 24 24 C 1.38827 * 119.95689 * 309.70650 * 16 15 14 25 25 H 0.96998 * 120.00192 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.97465 * 359.97438 * 11 10 9 27 27 H 1.08002 * 119.83673 * 179.71653 * 12 11 10 28 28 H 1.07997 * 119.86477 * 180.02562 * 13 12 11 29 29 H 1.08006 * 120.02283 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.68619 * 359.95286 * 17 16 15 31 31 H 1.08003 * 119.88093 * 180.02562 * 18 17 16 32 32 H 1.08001 * 126.30261 * 179.97438 * 22 21 20 33 33 H 1.07998 * 120.28709 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3570 -1.2006 0.0011 10 6 3.9730 -2.4049 -0.1050 11 6 3.2251 -3.5735 -0.0908 12 6 3.8540 -4.7984 -0.1983 13 6 5.2312 -4.8686 -0.3212 14 6 5.9879 -3.7145 -0.3368 15 6 5.3653 -2.4733 -0.2291 16 6 6.1738 -1.2302 -0.2459 17 6 5.8248 -0.1815 -1.1034 18 6 6.5593 0.9692 -1.1297 19 6 7.6666 1.1122 -0.3004 20 8 8.5577 2.1070 -0.1126 21 7 9.4966 1.7161 0.8688 22 6 9.2184 0.5213 1.2908 23 6 8.0281 0.0664 0.5658 24 6 7.2726 -1.1065 0.5935 25 1 -0.4850 0.8400 -0.0004 26 1 2.1504 -3.5252 0.0052 27 1 3.2690 -5.7061 -0.1823 28 1 5.7153 -5.8304 -0.4052 29 1 7.0620 -3.7738 -0.4333 30 1 4.9666 -0.2832 -1.7510 31 1 6.2788 1.7714 -1.7961 32 1 9.7629 -0.0356 2.0390 33 1 7.5421 -1.9122 1.2603 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243584551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = 49.349883 kcal Electronic energy + Delta-G solvation = -20764.174738 eV Core-core repulsion = 17529.716141 eV Total energy + Delta-G solvation = -3234.458597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.73238 -41.02062 -38.89084 -37.94357 -34.82342 -34.46893 -33.15889 -31.52657 -30.81140 -29.47914 -27.22619 -24.78910 -24.22543 -23.12102 -22.75295 -22.17067 -19.80427 -19.22079 -18.58534 -17.90657 -16.99077 -16.93852 -16.58286 -15.87815 -15.60606 -15.47250 -15.34626 -15.25414 -14.67574 -14.53292 -14.25209 -14.06661 -13.57743 -13.35943 -13.03607 -12.71701 -12.58759 -12.44649 -12.42213 -12.36603 -12.12902 -11.94276 -11.28837 -10.92526 -10.15558 -9.98275 -9.35108 -8.85475 -8.51557 -6.21275 -0.38721 -0.06032 0.66222 0.75581 1.10898 1.28665 1.29604 1.41473 1.47454 2.23382 2.51834 2.79368 3.06385 3.14112 3.25635 3.29390 3.55096 3.75235 4.15458 4.19437 4.23435 4.31641 4.39616 4.56358 4.67189 4.70392 4.87408 4.92974 5.04641 5.08394 5.25358 5.36197 5.48931 5.50144 5.69273 5.76198 5.82038 5.92094 6.13771 6.25985 6.84440 7.59809 8.60038 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.007403 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.011241 B = 3781.269685 C = 5586.480255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.949 3.051 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.391 4.391 8 H 0.084 0.916 9 O -0.231 6.231 10 C 0.133 3.867 11 C -0.241 4.241 12 C -0.071 4.071 13 C -0.180 4.180 14 C -0.056 4.056 15 C -0.128 4.128 16 C -0.059 4.059 17 C -0.046 4.046 18 C -0.138 4.138 19 C 0.059 3.941 20 O -0.130 6.130 21 N -0.321 5.321 22 C 0.143 3.857 23 C -0.208 4.208 24 C -0.020 4.020 25 H 0.283 0.717 26 H 0.109 0.891 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.126 0.874 31 H 0.144 0.856 32 H 0.265 0.735 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.034 -6.149 0.936 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.102 0.898 9 O -0.138 6.138 10 C 0.084 3.916 11 C -0.260 4.260 12 C -0.089 4.089 13 C -0.198 4.198 14 C -0.073 4.073 15 C -0.129 4.129 16 C -0.059 4.059 17 C -0.066 4.066 18 C -0.158 4.158 19 C 0.006 3.994 20 O -0.136 6.136 21 N -0.067 5.067 22 C -0.057 4.057 23 C -0.212 4.212 24 C -0.039 4.039 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.157 0.843 28 H 0.173 0.827 29 H 0.176 0.824 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.280 0.720 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.693 -4.642 0.953 18.316 hybrid contribution -1.444 0.276 -0.184 1.482 sum 16.249 -4.365 0.769 16.842 Atomic orbital electron populations 1.69712 1.06755 1.29345 1.50404 1.25070 0.95621 1.01441 0.95866 0.85517 0.79125 0.78482 0.79665 1.18487 1.20041 1.18651 1.20684 0.78268 0.95908 1.51877 0.89826 1.83543 1.20805 1.27029 1.82387 1.19611 0.92151 0.85303 0.94560 1.21286 1.00291 0.93271 1.11169 1.21252 0.95786 0.96200 0.95702 1.21176 0.93052 0.99258 1.06294 1.21230 1.00701 0.89454 0.95935 1.18019 0.88459 0.93767 1.12623 1.18591 0.95821 0.93980 0.97541 1.21032 0.96957 0.91814 0.96781 1.19778 0.94138 0.99946 1.01905 1.20494 0.92667 0.89003 0.97248 1.89088 1.35689 1.36505 1.52366 1.79777 1.08174 1.15762 1.03011 1.26862 0.91783 0.91360 0.95744 1.21034 1.00252 0.97688 1.02215 1.21000 0.91274 0.95791 0.95860 0.90728 0.87349 0.84307 0.82691 0.82447 0.85652 0.83800 0.71981 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.18 13.96 21.61 0.30 -53.88 16 2 C 0.02 1.06 5.49 84.83 0.47 1.53 16 3 Si 0.95 44.99 28.62 68.60 1.96 46.95 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.39 -22.00 9.95 67.92 0.68 -21.32 16 8 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 9 O -0.23 -11.66 6.92 -21.82 -0.15 -11.82 16 10 C 0.13 5.73 6.55 22.81 0.15 5.88 16 11 C -0.24 -9.73 9.16 22.36 0.20 -9.53 16 12 C -0.07 -2.16 10.03 22.29 0.22 -1.94 16 13 C -0.18 -4.43 10.03 22.27 0.22 -4.20 16 14 C -0.06 -1.43 9.50 22.47 0.21 -1.21 16 15 C -0.13 -4.36 5.48 -19.93 -0.11 -4.46 16 16 C -0.06 -1.91 5.27 -20.06 -0.11 -2.02 16 17 C -0.05 -1.63 8.70 22.27 0.19 -1.43 16 18 C -0.14 -4.51 10.00 22.07 0.22 -4.29 16 19 C 0.06 1.89 7.48 23.03 0.17 2.06 16 20 O -0.13 -4.28 12.06 29.36 0.35 -3.93 16 21 N -0.32 -8.78 12.81 -52.84 -0.68 -9.46 16 22 C 0.14 2.82 12.32 87.19 1.07 3.90 16 23 C -0.21 -5.45 6.34 -20.22 -0.13 -5.57 16 24 C -0.02 -0.50 9.56 22.72 0.22 -0.28 16 25 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.11 4.90 5.64 -2.91 -0.02 4.88 16 27 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.16 2.81 8.04 -2.91 -0.02 2.79 16 30 H 0.13 4.72 7.66 -2.91 -0.02 4.70 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.26 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.17 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -69.54 296.93 6.64 -62.90 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.16 Total: 12.12 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.69 Total: -42.89 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.38 Total: -63.34 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.20 Total: -15.74 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.96 Total: 46.95 kcal Total: -69.54 6.64 -62.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.252 kcal (2) G-P(sol) polarization free energy of solvation -69.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds