Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86799 * 120.00055 * 2 1 4 4 H 1.48500 * 109.47256 * 269.99790 * 3 2 1 5 5 H 1.48500 * 109.47052 * 30.00382 * 3 2 1 6 6 H 1.48505 * 109.47167 * 149.99978 * 3 2 1 7 7 C 1.38647 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00275 * 359.97438 * 7 2 1 9 9 O 1.34817 * 119.99760 * 179.97438 * 7 2 1 10 10 C 1.35668 * 116.99738 * 185.07914 * 9 7 2 11 11 C 1.38747 * 120.13779 * 354.40463 * 10 9 7 12 12 C 1.38116 * 120.05177 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.33292 * 0.02562 * 12 11 10 14 14 C 1.37999 * 120.27616 * 0.02562 * 13 12 11 15 15 C 1.39327 * 119.93973 * 359.97438 * 14 13 12 16 16 C 1.48209 * 120.16374 * 180.02562 * 15 14 13 17 17 C 1.39039 * 120.15821 * 64.72967 * 16 15 14 18 18 C 1.38493 * 120.45280 * 179.71906 * 17 16 15 19 19 C 1.37749 * 120.52205 * 0.55537 * 18 17 16 20 20 C 1.39774 * 119.94384 * 359.72414 * 19 18 17 21 21 C 1.46586 * 133.64319 * 179.97438 * 20 19 18 22 22 N 1.29755 * 107.40279 * 179.97438 * 21 20 19 23 23 O 1.41352 * 109.69466 * 0.02562 * 22 21 20 24 24 C 1.34750 * 109.33678 * 359.97438 * 23 22 21 25 25 H 0.96989 * 119.99809 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97245 * 0.04405 * 11 10 9 27 27 H 1.08008 * 119.83135 * 180.27650 * 12 11 10 28 28 H 1.08009 * 119.86289 * 179.97438 * 13 12 11 29 29 H 1.08006 * 120.02856 * 179.97438 * 14 13 12 30 30 H 1.08005 * 119.77137 * 359.97438 * 17 16 15 31 31 H 1.08006 * 119.74038 * 180.27671 * 18 17 16 32 32 H 1.07999 * 120.02937 * 179.74378 * 19 18 17 33 33 H 1.08008 * 126.30099 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3570 -1.2007 0.0000 10 6 3.9729 -2.4048 -0.1064 11 6 3.2251 -3.5734 -0.0918 12 6 3.8540 -4.7984 -0.1997 13 6 5.2312 -4.8689 -0.3225 14 6 5.9883 -3.7152 -0.3375 15 6 5.3658 -2.4735 -0.2294 16 6 6.1741 -1.2313 -0.2456 17 6 6.8888 -0.8778 -1.3846 18 6 7.6415 0.2845 -1.4084 19 6 7.7022 1.1014 -0.3009 20 6 6.9959 0.7616 0.8563 21 6 6.8478 1.3899 2.1724 22 7 6.0628 0.6343 2.8770 23 8 5.6635 -0.4840 2.1103 24 6 6.2256 -0.4105 0.8878 25 1 -0.4849 0.8400 0.0004 26 1 2.1504 -3.5252 0.0038 27 1 3.2680 -5.7057 -0.1924 28 1 5.7151 -5.8309 -0.4060 29 1 7.0625 -3.7749 -0.4331 30 1 6.8536 -1.5119 -2.2582 31 1 8.1887 0.5503 -2.3008 32 1 8.2949 2.0039 -0.3268 33 1 7.3069 2.3125 2.4958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 47.968150 kcal Electronic energy + Delta-G solvation = -21322.209480 eV Core-core repulsion = 18087.690967 eV Total energy + Delta-G solvation = -3234.518513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67840 -40.92484 -38.78438 -38.00585 -34.95785 -34.50356 -33.02591 -31.08001 -30.87377 -29.70450 -27.28091 -24.78593 -23.82445 -23.54282 -22.87115 -21.93084 -19.84206 -19.21097 -18.55925 -17.87887 -16.97373 -16.71951 -16.62682 -16.13605 -15.76814 -15.61785 -15.42863 -14.97035 -14.63330 -14.42853 -14.28574 -14.14780 -13.34827 -13.10557 -13.06501 -12.78490 -12.61521 -12.52110 -12.46254 -12.36485 -12.22468 -11.92677 -11.32275 -10.98554 -10.05736 -9.78844 -9.37868 -8.98139 -8.57734 -6.26775 -0.36244 0.20380 0.54694 0.67157 1.13747 1.16177 1.21651 1.38896 1.49655 2.18491 2.61380 2.72205 3.01484 3.08896 3.33602 3.36508 3.56645 3.97134 4.14675 4.20769 4.24070 4.30451 4.46480 4.50437 4.62788 4.76755 4.89809 4.91896 5.11850 5.22724 5.29662 5.35992 5.42022 5.57055 5.68485 5.71739 5.78520 5.86229 6.19715 6.23683 6.78058 7.55908 8.54393 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.011725 B = 0.010060 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.514984 B = 2782.598352 C = 4250.540153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.394 4.394 8 H 0.083 0.917 9 O -0.232 6.232 10 C 0.134 3.866 11 C -0.245 4.245 12 C -0.071 4.071 13 C -0.181 4.181 14 C -0.057 4.057 15 C -0.137 4.137 16 C -0.059 4.059 17 C -0.052 4.052 18 C -0.144 4.144 19 C -0.033 4.033 20 C -0.224 4.224 21 C 0.126 3.874 22 N -0.335 5.335 23 O -0.136 6.136 24 C 0.069 3.931 25 H 0.284 0.716 26 H 0.108 0.892 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.229 0.814 -3.882 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.204 1.204 7 C -0.471 4.471 8 H 0.100 0.900 9 O -0.139 6.139 10 C 0.085 3.915 11 C -0.265 4.265 12 C -0.089 4.089 13 C -0.199 4.199 14 C -0.075 4.075 15 C -0.138 4.138 16 C -0.061 4.061 17 C -0.071 4.071 18 C -0.162 4.162 19 C -0.052 4.052 20 C -0.228 4.228 21 C -0.074 4.074 22 N -0.081 5.081 23 O -0.142 6.142 24 C 0.015 3.985 25 H 0.094 0.906 26 H 0.126 0.874 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.199 0.801 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 19.420 0.853 -2.695 19.625 hybrid contribution -0.747 0.482 -0.157 0.903 sum 18.673 1.334 -2.853 18.937 Atomic orbital electron populations 1.69712 1.06550 1.29387 1.50396 1.25102 0.95752 1.01521 0.95795 0.85336 0.78424 0.78459 0.79265 1.18322 1.19238 1.20433 1.20729 0.78296 0.96049 1.51983 0.89978 1.83541 1.20922 1.27180 1.82243 1.19701 0.92330 0.85343 0.94164 1.21299 1.00255 0.93371 1.11528 1.21259 0.95783 0.96112 0.95703 1.21179 0.93058 0.99174 1.06499 1.21218 1.00491 0.89564 0.96200 1.18126 0.88646 0.94297 1.12767 1.17852 1.01601 0.95174 0.91464 1.21631 0.92930 0.97386 0.95148 1.21472 1.00805 0.93892 1.00042 1.21253 0.94988 1.00105 0.88861 1.21266 1.07126 0.96296 0.98085 1.26953 0.91404 0.99340 0.89746 1.79740 1.16171 0.96328 1.15832 1.89143 1.62996 1.40306 1.21798 1.20794 0.93530 0.96772 0.87402 0.90606 0.87405 0.83924 0.82374 0.82734 0.82311 0.80244 0.80127 0.71965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.11 13.96 21.61 0.30 -56.81 16 2 C 0.02 1.03 5.49 84.83 0.47 1.50 16 3 Si 0.96 49.09 28.62 68.60 1.96 51.06 16 4 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 7 C -0.39 -24.47 9.95 67.92 0.68 -23.79 16 8 H 0.08 5.30 5.44 -2.91 -0.02 5.28 16 9 O -0.23 -13.42 7.80 -21.71 -0.17 -13.59 16 10 C 0.13 6.71 6.62 22.82 0.15 6.86 16 11 C -0.25 -11.35 9.16 22.36 0.20 -11.15 16 12 C -0.07 -2.49 10.03 22.29 0.22 -2.26 16 13 C -0.18 -5.36 10.03 22.26 0.22 -5.14 16 14 C -0.06 -1.81 9.73 22.48 0.22 -1.59 16 15 C -0.14 -5.60 5.33 -19.94 -0.11 -5.71 16 16 C -0.06 -2.22 4.95 -20.00 -0.10 -2.32 16 17 C -0.05 -1.40 9.70 22.52 0.22 -1.19 16 18 C -0.14 -2.88 10.01 22.21 0.22 -2.66 16 19 C -0.03 -0.67 10.09 22.53 0.23 -0.45 16 20 C -0.22 -6.84 6.35 -20.23 -0.13 -6.97 16 21 C 0.13 3.50 12.32 87.18 1.07 4.58 16 22 N -0.33 -13.19 12.81 -52.84 -0.68 -13.86 16 23 O -0.14 -6.49 12.06 30.60 0.37 -6.12 16 24 C 0.07 2.79 6.90 23.20 0.16 2.96 16 25 H 0.28 16.21 8.31 -92.72 -0.77 15.44 16 26 H 0.11 5.47 5.64 -2.91 -0.02 5.45 16 27 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.18 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.26 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -83.54 299.04 6.67 -76.87 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.15 Total: 9.78 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.73 Total: -47.33 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.38 Total: -70.67 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.20 Total: -19.71 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 1.96 Total: 51.06 kcal Total: -83.54 6.67 -76.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.840 kcal (2) G-P(sol) polarization free energy of solvation -83.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds