Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86801 * 119.99508 * 2 1 4 4 H 1.48506 * 109.46812 * 240.00251 * 3 2 1 5 5 H 1.48498 * 109.47476 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47063 * 120.00495 * 3 2 1 7 7 C 1.38645 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99656 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00159 * 359.97438 * 7 2 1 10 10 C 1.35685 * 116.99745 * 185.05310 * 9 7 2 11 11 C 1.39026 * 119.93771 * 354.45375 * 10 9 7 12 12 C 1.37796 * 120.06254 * 179.97438 * 11 10 9 13 13 C 1.39560 * 119.93453 * 359.97438 * 12 11 10 14 14 C 1.48080 * 120.06218 * 179.97438 * 13 12 11 15 15 C 1.38966 * 120.29155 * 309.98224 * 14 13 12 16 16 C 1.38434 * 120.21760 * 180.02562 * 15 14 13 17 17 C 1.37968 * 120.75812 * 359.94399 * 16 15 14 18 18 C 1.38966 * 120.20786 * 0.03516 * 17 16 15 19 19 O 1.34878 * 133.30078 * 180.02562 * 18 17 16 20 20 N 1.41354 * 109.29505 * 179.97438 * 19 18 17 21 21 C 1.29832 * 109.69039 * 0.02562 * 20 19 18 22 22 C 1.40361 * 119.62302 * 0.02562 * 18 17 16 23 23 C 1.39553 * 119.87621 * 0.25367 * 13 12 11 24 24 C 1.37795 * 119.93625 * 359.51034 * 23 13 12 25 25 H 0.97000 * 120.00120 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.97343 * 359.97438 * 11 10 9 27 27 H 1.07995 * 120.03381 * 180.02562 * 12 11 10 28 28 H 1.07995 * 119.89348 * 0.03980 * 15 14 13 29 29 H 1.08002 * 119.61832 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.89219 * 180.31299 * 17 16 15 31 31 H 1.07997 * 126.28306 * 179.97438 * 21 20 19 32 32 H 1.07994 * 120.03146 * 179.74328 * 23 13 12 33 33 H 1.07998 * 119.96991 * 180.25178 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6965 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0699 -3.5038 0.1054 11 6 3.4584 -3.4353 0.0913 12 6 4.2074 -4.5869 0.1993 13 6 3.5708 -5.8226 0.3234 14 6 4.3729 -7.0620 0.4390 15 6 5.3951 -7.3224 -0.4657 16 6 6.1437 -8.4817 -0.3565 17 6 5.8902 -9.3933 0.6476 18 6 4.8742 -9.1575 1.5659 19 8 4.4073 -9.8478 2.6264 20 7 3.3410 -9.1320 3.2169 21 6 3.1361 -8.0312 2.5597 22 6 4.1067 -7.9866 1.4660 23 6 2.1769 -5.8887 0.3325 24 6 1.4330 -4.7335 0.2291 25 1 -0.4850 0.8400 0.0004 26 1 3.9505 -2.4788 -0.0044 27 1 5.2859 -4.5332 0.1887 28 1 5.6063 -6.6178 -1.2565 29 1 6.9355 -8.6745 -1.0652 30 1 6.4861 -10.2908 0.7228 31 1 2.3866 -7.2854 2.7800 32 1 1.6817 -6.8441 0.4242 33 1 0.3542 -4.7836 0.2401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 61.298672 kcal Electronic energy + Delta-G solvation = -20060.715847 eV Core-core repulsion = 16826.775389 eV Total energy + Delta-G solvation = -3233.940458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69456 -39.25145 -37.89246 -36.37182 -33.76432 -32.52576 -31.30926 -30.52437 -29.94124 -27.86600 -25.53718 -23.51045 -22.95454 -22.16827 -21.76578 -20.53758 -18.19843 -17.57093 -17.39991 -16.76886 -15.89425 -15.59432 -14.92644 -14.69840 -14.53743 -13.96540 -13.89550 -13.69202 -13.58998 -12.93804 -12.80335 -12.39559 -12.14335 -11.88284 -11.78184 -11.60507 -11.39234 -11.26609 -10.94529 -10.85322 -10.75994 -10.56311 -9.53861 -9.08925 -8.91127 -8.55188 -8.41112 -7.25886 -6.61631 -4.19207 0.53288 1.19135 1.98877 2.05560 2.21801 2.55658 3.04323 3.05456 3.08621 3.58556 3.83757 4.18725 4.37268 4.41928 4.59204 4.89428 4.94217 5.00182 5.09243 5.24017 5.39450 5.47951 5.58667 5.71114 5.80817 6.00511 6.04661 6.10872 6.22076 6.39156 6.48683 6.57139 6.71525 6.88905 7.04570 7.15752 7.21217 7.25343 7.59647 7.82662 8.83161 9.49825 10.55239 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.032424 B = 0.003591 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.353203 B = 7796.070737 C = 8253.754363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.167 6.167 10 C 0.162 3.838 11 C -0.235 4.235 12 C -0.043 4.043 13 C -0.178 4.178 14 C 0.083 3.917 15 C -0.158 4.158 16 C -0.053 4.053 17 C -0.150 4.150 18 C 0.087 3.913 19 O -0.104 6.104 20 N -0.299 5.299 21 C 0.123 3.877 22 C -0.202 4.202 23 C -0.053 4.053 24 C -0.192 4.192 25 H 0.274 0.726 26 H 0.131 0.869 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.209 0.791 32 H 0.113 0.887 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -11.756 -0.484 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.069 6.069 10 C 0.106 3.894 11 C -0.255 4.255 12 C -0.061 4.061 13 C -0.179 4.179 14 C 0.081 3.919 15 C -0.176 4.176 16 C -0.072 4.072 17 C -0.169 4.169 18 C 0.033 3.967 19 O -0.113 6.113 20 N -0.042 5.042 21 C -0.078 4.078 22 C -0.206 4.206 23 C -0.071 4.071 24 C -0.212 4.212 25 H 0.083 0.917 26 H 0.149 0.851 27 H 0.130 0.870 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.226 0.774 32 H 0.131 0.869 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.958 -12.381 0.528 15.291 hybrid contribution 0.632 1.374 -0.596 1.626 sum 9.589 -11.007 -0.068 14.598 Atomic orbital electron populations 1.70024 1.06070 1.28219 1.44572 1.25347 0.95878 0.99037 0.96127 0.85746 0.78765 0.79428 0.79358 1.19318 1.20126 1.19323 1.21357 0.91957 0.80653 1.53060 0.88769 1.83952 1.34673 1.11648 1.76617 1.19511 0.90293 0.87995 0.91589 1.21098 0.93688 0.98973 1.11706 1.20764 0.98433 0.91088 0.95844 1.18130 0.92683 0.91144 1.15941 1.18417 0.92283 0.91290 0.89954 1.21212 0.97279 0.98565 1.00545 1.21020 0.97754 0.92586 0.95828 1.19903 0.98743 1.02563 0.95736 1.20235 0.95445 0.91263 0.89772 1.89122 1.43256 1.41366 1.37579 1.79893 1.01014 1.07016 1.16322 1.26102 0.96261 0.94961 0.90458 1.20818 1.00642 0.98329 1.00772 1.20655 0.92134 0.96871 0.97474 1.20145 0.99747 0.90042 1.11233 0.91653 0.85140 0.87048 0.84749 0.84552 0.84934 0.77447 0.86891 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.92 13.67 55.48 0.76 -23.16 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.41 29.55 -169.99 -5.02 14.38 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.39 -10.38 9.48 30.88 0.29 -10.09 16 8 H 0.09 2.26 5.19 -52.49 -0.27 1.99 16 9 O -0.17 -4.47 9.75 0.31 0.00 -4.47 16 10 C 0.16 3.60 6.65 -38.99 -0.26 3.34 16 11 C -0.24 -4.66 9.15 -39.45 -0.36 -5.03 16 12 C -0.04 -0.72 9.50 -39.25 -0.37 -1.09 16 13 C -0.18 -2.82 5.43 -104.88 -0.57 -3.39 16 14 C 0.08 1.16 5.49 -104.65 -0.57 0.59 16 15 C -0.16 -1.87 9.50 -39.24 -0.37 -2.24 16 16 C -0.05 -0.52 10.00 -39.61 -0.40 -0.92 16 17 C -0.15 -1.66 10.05 -39.41 -0.40 -2.05 16 18 C 0.09 1.20 7.47 -38.51 -0.29 0.92 16 19 O -0.10 -1.60 12.07 7.52 0.09 -1.51 16 20 N -0.30 -4.49 12.82 31.89 0.41 -4.08 16 21 C 0.12 1.66 11.51 -15.16 -0.17 1.48 16 22 C -0.20 -2.87 6.02 -104.92 -0.63 -3.50 16 23 C -0.05 -0.86 8.84 -39.25 -0.35 -1.21 16 24 C -0.19 -3.70 9.98 -39.45 -0.39 -4.09 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.13 2.58 5.62 -52.49 -0.30 2.29 16 27 H 0.11 1.58 8.04 -52.49 -0.42 1.16 16 28 H 0.13 1.42 8.04 -52.49 -0.42 1.00 16 29 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.21 2.30 7.81 -52.49 -0.41 1.89 16 32 H 0.11 1.57 7.87 -52.49 -0.41 1.16 16 33 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 298.79 15.07 4.50 4.50 Total: -1.00 -29.67 298.79 -6.84 -36.51 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.64 Total: 4.11 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -4.94 Total: -26.28 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 1.17 Total: -27.25 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: 0.09 Total: -5.98 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.67 -6.84 -36.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.810 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds